RNA id: XM_021604998.2


Basic Information

Item Value
RNA id XM_021604998.2
length 1613
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC110525049
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 73011717 ~ 73013424 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTggacaacattttagagaaatacgttttttgtgcatttggaaaatgtctgtgatcttttgtttcagctaatgaaaaatgggaccaacactctacatgttgtttttatatattttttcattgtaCATGGCTCTGGGCTATTTTATCCATAAACTATCATCATTATGACAATAGAATGATTCAATATAATTAcaatcattctatttctatgattattacatcataatcatcatcattatgAGGGCAGATGTTGTTACATGATGAATGATGACATGTGCATTCTAGTGGATCAAGATTAGCCATCAGTCAACTTCAAATTCAAATATAGCTGCAAGCTTCTGGGGTTCAAGCTTTGGTCACATAGTGCCACCATCAGGACAAATTGGAAACATTGCCAAATTCAATGAATACCAGCGTTGTATTATAATGTAATTTTGATTTGTGCAATTATTTTCAGAGCAAGAGCAATAATAACTTTTTTTTCATGAGTGATCAATGGATTGATCTATCTATAAATTGTCATGGATCAAAGTCCATCTCGTTCATCAATGGCCCCTTCTATAGAGGAGCTCACTGAAGAAATGTCTCAAGTGGTTCAGGTCAGTGAACTCACTGGGATCTCCATGAGCCAGATCATGGCATCCAGAACCTCCTTGGGAACGCCAGTGACTTCTGTTTCCCAACTCCTTGCATCCGTGACATCCTTGCATTCACCAATGCCACCTCTTACTAAAGCTGCTTGGGGCTCCAAGGAACATGACTCTAATGAGATAAGCATTATTAGCCATTTGTCCTCACATTGTGTGGATAAGTCATGGCCTTTTGCAATCTACCCACGCTGTGAGGAACTAATCCAACAAGAAAGAATGCCTCCGCTGGAGAAGTATCCCTCTCCCACCGTGCCAAGGAAGAGATCAAAGAGCCGGGCAATGTCTTCCCTGTCACTGAGGTCAGGGTGCTCTGAACAGACCCTGACCAGTATCCATGAGGAAGATGAGACTAAGGTGGTCCACCTGATCAGCCAGGCTGTGCCTGAGGAGACCCCAATGGAAATAATGGCTGAAGTGGAAAAAGTGGCAAGTAAAGACTCCTCCAATAAGAAGGCCTCCTTCTGGAGGAGACTGAGATGTCTTTGTTGCCTGGGGAAGAAGGAGGCTGCTACTACAAAGAAGACTAAGGTGGAGGTGCATGAGCAGGAGGATGCTGAGGTGACCCGGGATGCTGTTTTCCCTACTGAGATGTCCTTAAAATGCTCAGGAAATGATTGATGCCCTAAATATGAATATTTTAATAAAATCTGAATATTTTAGATGTCAGCCTCTGTGTGACACCtgctcctactctccctctctgccgccagctgtcaccatcattacgtgcAGCCGtgcaatattggactcacctggactccattactctGTAGATTGCCCTTCTATCtatgtctgttcctcagttggttccctgtgtcagcattgtTGTTATGTTCCCCTGTCCAGATGCTGTTTTTGTTTTAATGTCTGTTTTACAGTAAATGTTCACtctctgtacttgcttctcgtttCCAGTGTCGATCCTTACagaatgctctaaccactaaaagaagcatcagggagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU614876 lncRNA upstream 24255 72987256 ~ 72987462 (+) True G542994
TU614795 lncRNA upstream 159617 72851648 ~ 72852100 (+) True G542916
TU614785 lncRNA upstream 178986 72832504 ~ 72832731 (+) True G542906
TU614714 lncRNA upstream 185285 72823236 ~ 72826432 (+) True G542843
TU614784 lncRNA upstream 190746 72819924 ~ 72820971 (+) True G542905
TU614891 lncRNA downstream 14776 73028200 ~ 73028554 (+) True G543009
TU614894 lncRNA downstream 18103 73031527 ~ 73031864 (+) True G543012
TU614895 lncRNA downstream 18692 73032116 ~ 73032334 (+) True G543013
TU614896 lncRNA downstream 19087 73032511 ~ 73032760 (+) True G543014
TU614901 lncRNA downstream 21690 73035114 ~ 73035455 (+) True G543016
XM_021607590.2 mRNA upstream 10174 72990006 ~ 73001543 (+) False LOC110526539
XM_021607589.2 mRNA upstream 10174 72990007 ~ 73001543 (+) False LOC110526539
XM_021607591.2 mRNA upstream 10174 72990179 ~ 73001543 (+) True LOC110526539
XM_036980921.1 mRNA upstream 104711 72884477 ~ 72907006 (+) True LOC110526537
XM_021607583.2 mRNA upstream 127679 72839585 ~ 72884038 (+) False LOC110526536
XM_021607593.2 mRNA downstream 2789 73016213 ~ 73020001 (+) True LOC110526541
XR_005052444.1 mRNA downstream 3984 73017408 ~ 73017539 (+) True LOC118965112
LOC118965096 mRNA downstream 5631 73019055 ~ 73019257 (+) True LOC118965096
XR_005052450.1 mRNA downstream 6148 73019572 ~ 73019700 (+) True LOC118965119
XM_036980923.1 mRNA downstream 24529 73037953 ~ 73182742 (+) False LOC110526543
TU614766 other upstream 244866 72765681 ~ 72766851 (+) True G542890
TU614654 other upstream 344845 72665460 ~ 72666872 (+) True saa
TU613870 other upstream 859323 72151020 ~ 72152394 (+) True G542100
TU613820 other upstream 909243 72101380 ~ 72102474 (+) True G542053
TU613619 other upstream 1207255 71800040 ~ 71804462 (+) True G541903
TU614905 other downstream 25197 73038621 ~ 73145347 (+) True LOC110526543
TU615384 other downstream 359381 73372805 ~ 73387687 (+) False LOC100136290
TU616612 other downstream 1274354 74287778 ~ 74288138 (+) True G544565
TU617662 other downstream 2224376 75237800 ~ 75238164 (+) True G545485
TU617795 other downstream 2408437 75421861 ~ 75422752 (+) True G545601

Expression Profile