RNA id: XR_005052450.1



Basic Information


Item Value
RNA id XR_005052450.1
length 129
RNA type mRNA
GC content 0.43
exon number 1
gene id LOC118965119
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 73019572 ~ 73019700 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGGCACATTTCATTGTCCTGTTCTTCCCTTGTAAGAGCTGAGATATTTCTTATGTGCTAGATAAAACCTTGGAGGTAAATTAGCAGAATGGCTGTTCTGTGCCAACCTGCCAGTCCCCTTCATACATCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU614876 lncRNA upstream 32110 72987256 ~ 72987462 (+) True G542994
TU614795 lncRNA upstream 167472 72851648 ~ 72852100 (+) True G542916
TU614785 lncRNA upstream 186841 72832504 ~ 72832731 (+) True G542906
TU614714 lncRNA upstream 193140 72823236 ~ 72826432 (+) True G542843
TU614784 lncRNA upstream 198601 72819924 ~ 72820971 (+) True G542905
TU614891 lncRNA downstream 8500 73028200 ~ 73028554 (+) True G543009
TU614894 lncRNA downstream 11827 73031527 ~ 73031864 (+) True G543012
TU614895 lncRNA downstream 12416 73032116 ~ 73032334 (+) True G543013
TU614896 lncRNA downstream 12811 73032511 ~ 73032760 (+) True G543014
TU614901 lncRNA downstream 15414 73035114 ~ 73035455 (+) True G543016
LOC118965096 mRNA upstream 315 73019055 ~ 73019257 (+) True LOC118965096
XR_005052444.1 mRNA upstream 2033 73017408 ~ 73017539 (+) True LOC118965112
XM_021604998.2 mRNA upstream 6148 73011717 ~ 73013424 (+) True LOC110525049
XM_021607590.2 mRNA upstream 18029 72990006 ~ 73001543 (+) False LOC110526539
XM_036980923.1 mRNA downstream 18253 73037953 ~ 73182742 (+) False LOC110526543
XM_036980924.1 mRNA downstream 18254 73037954 ~ 73182742 (+) False LOC110526543
XM_036980925.1 mRNA downstream 18254 73037954 ~ 73182742 (+) False LOC110526543
XM_036980928.1 mRNA downstream 18254 73037954 ~ 73182742 (+) False LOC110526543
XM_036980926.1 mRNA downstream 18255 73037955 ~ 73182742 (+) False LOC110526543
TU614766 other upstream 252721 72765681 ~ 72766851 (+) True G542890
TU614654 other upstream 352700 72665460 ~ 72666872 (+) True saa
TU613870 other upstream 867178 72151020 ~ 72152394 (+) True G542100
TU613820 other upstream 917098 72101380 ~ 72102474 (+) True G542053
TU613619 other upstream 1215110 71800040 ~ 71804462 (+) True G541903
TU614905 other downstream 18921 73038621 ~ 73145347 (+) True LOC110526543
TU615384 other downstream 353105 73372805 ~ 73387687 (+) False LOC100136290
TU616612 other downstream 1268078 74287778 ~ 74288138 (+) True G544565
TU617662 other downstream 2218100 75237800 ~ 75238164 (+) True G545485
TU617795 other downstream 2402161 75421861 ~ 75422752 (+) True G545601

Expression Profile