RNA id: XM_036980933.1


Basic Information

Item Value
RNA id XM_036980933.1
length 6838
RNA type mRNA
GC content 0.50
exon number 28
gene id LOC110526543
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 73037953 ~ 73182742 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAGTGCCAAATATGTGGGTCAGGATGAAgtgattaagagagagagagagagagagagactcccccTTGCCACCACCTTGAGGATCGCCAGTCTAACTTGGAGGAAGTAGATCATCCACTGGGACACGCCAGCCATAACCAGAAGAGAACGTCGTTCCGACACCCTGTGACTGGACAGATATCTCCAGAAAACACTGAATATATGCTCCACGACAAGACAGAGTCCCGGGGCATGTCCAAGCCACCGCCACCGGCCAGTCAGAGGCCCCCCAGCATGGTCAGCCAGACTTCCAAGGCTGTGACCTCATCAACAGTGGATGTCACCTCAGGGTCAAAGCCACAGGGCTCTAGGAATAGTGGCAAGGTACACAGCTTCGGCAAAAGGGACCAAGCCATCAAGAGGAACCCCAATATCCCTGTGGTGGTCAGGGGATGGCTCTACAAACAGGACAGCTCTGGAATGAGACTGTGGAAGAGGAAGTGGTTTGTGTTGTCTGACTACTGCTTGTTTTATTACAAAGacagcagagaggagatgGTTTTGGGGAGCATCCCCCTGCCCAGTTATGTCATCGCCCCTGTGGAGCCTGATGACCACATCAGCCGCAAGTATGCCTTCAAGgCGAGCCACACAGGAATGCGCTCCTACATTTACAATAAGAACTCTGTGATTGGCTCGCAGGCAGAGCACGGTGGGATGAGGACGTACTTCTTCAGTGCCGACACCCAGGAGGACATGAATGGTTGGATCCGAGCCATGAACCAGGCTGCTCTAATGCAGAGTCAAGGCATCAAGAGAGAGGCAGTCACAGAGAGACCAGAAATGTCAGTGCAGCAGGCAGTACCACAGACCAACCacgttaacaacaacaacaccagtaaGAGCCCCTCCCAGTCGCGTTCAGGGAGCCTCCAGCGGCCCGAGAGAGAGGAGCCTCCGGAGGGGGCGATCCGACTGAGCCAGGGGGACGAGGAGAGGTACGTGTTGGAGGCTCCTAGAAAGCTCAGCCATCCAGCCACGGAGGTAGAGGTGGACAGGCTCTCCCCAGACACTCTCCCTGGCCCCTCACACCCCAGGAATGGCCAGGCCCACACAGTCCTCGCCACGCTGCCCCCTGAGAAGAATGGGAACATTGTGTATAAGAGGGGCTTTGTCCCACGGACAGCCACAGAGAAGAAGGTGCAGAGGAAGACTGCTCTGGCTCAGGTGGAGCACTGGGTCAATGTACAGAAGGGAGATCCCAAGAGCAACACATCTACTACTGAgtactccctccccctccctcggcGGACCCCTCCCCTGCAGCCTAAGGCCGTGGTAGTAGAGGCCTACCAGACATTGCCAAAGACCCCCAGACTCCCGTCTGGCGGGAGCTCCCCTTCGGCGCCCCGCAACCTGCCCAGCGACTACAAATACGCCCACGACCGGCTCAGCCACTTCCGCATGTCCACCGATGAGCGCATGGCCACCAAGGAGGGCATGGTATGGCAGCTGTATGAGTGGCAGCAGCGCCAGCAGTTCCGCCACGGCAGCCCCACGGCGCCCATCTACACCGGGCCAGAGTTCCTGGACACCTCCTCCTTCAGGGTCACTGTGGAGATGCCTCGCTCCATCTCTGTGCCTCCTTCTCCCTGTGAAGTCCCCCCATCTGTCCCCACCTTCAAACCACTGTCCCCCCACAGGCCGCACACCCCCTCAGACAGGGTGACGGTCAGGCCGCTGGATGAGGTGCCACCTGGGGAGTCCCCCACCGGCTCCAGTTCTCCTAGACGGGTGTTTTCTCAGCTTTCTAAGACTAGTCAGCTAGAGAGACGGTCAATGCCAGCCATGGgctacatcacacacacagtcagcgcACCAAGCTTGCATGGGAAAACGCCGGAGGAGTTGACCCTGCTGCTCATTCAGCTCAGGAGTCACCAGGCCAAGATGGCTGGTGTCCACGGCGACGCCCTCCACCACCTACATCACAACGGCCTCCTAGGCCCCAGCCTGCAGGCAGATGATACTTACATGCAACTGAAGAAGGACCTGGATTATCTAGATCTGAAGATCAAAAGTATTGACCCGTTGATCGTTATGGTACACAATGTGTTAGAAAACACCCCTCCAGGTTTTGGGTCCAGTTGGAATGTTACAGGCCGTGAAACTCTAAAAGACAGACCATCGAGACCTGTTCAGATAGCAGAGAGCGATGTTGATGTGAAGTTAAGCCGACTGTGTGAACAAGACAAGATCCTTCAGGAGCTGGAAACAACGATCCGCACGCTCAAGGAAGACAAGGACAAGTTGGAGTCCGTGCTGGACGTGTCCCACCAGCAGATGGAGCAGTACCGGGACCAGCCGGCCCACCAGGAGAAGATATCCTACCAGCAGAGACTACTGCAGGAGGACGTGGTGCACATCAGAGCTGAGATCTCTCAGGTGTCCACGGAGATGGAGAATGCGTGGAATGAGTACAGCAGCCTAGAGAGAAATGTAGACTGGTTGAGGACAGCTCTGGAGGGCCAGATGAACCGCAGTGGTCTCTCTCAGAAGGAGAAGTTCCAGATCAAGAGGGAGTTGTGGAGGATTGAAGACGTAATAGCAGGCCTCAGCTCCAGCAAAGCCAACTACCAAGTCACCATCTCCTCTGTGACCAACCCAGAGAGAAAACTTGTGCCTTCCGTGTCGCCATCGTCAGTGCCTTCTCTGTCTGCCAGTCCCTCCCTGGGAGAGATGAGACTGGCCCAGCAGCACAGCCCCCACCTCAGCCCCACAacccccacctccacccagcACACCACCGCAGCCCTCCCCATATCTGTGTCAAAATGGGCAAATGAGGGCGCCCCTCCCCGACCACCACTACCTCAGCTATACAGTCCTGAGGACCACGCCCCCGCCGTGCCTCCGCTGCCCAGGGAAACCAGCGTCATCAGACACACGTCTGTACGAGGCCTCAAACGACAGTCTGACGAACGCAAGCGGGACAGGGAGATCGGCCAATACACCAACGAAGACAACAAGGTGGAGCTGCGCACCTTCCTGAGTGAACCTGAGCTTCTGGGAGTGGGAGGGTCTGGTCACATGAGGCTGGGGGCCTTGGGGCATGATGGTGGTTACCAGACCCTGCCAAGCAGAGGGCCGGCTGGCTCCTCATCCAGGCTAAATCAGTCCACAAACATCTCCTCATATGTTACCCTCCGAAGAGGAGCCTCAGCCGCCTCAGGCCTGAAGgaGAGACCAAAGAGTGCCTTGGAGCGTCTGTACTCTGGGGATGTGCTGCAGCAGCAGAGTAGGGGGAGGATGAGTGCTGAGGAGCAGCTGCAGAGGATGAAGAGGCACCAGAAAGCTCTGGTCCGCCAGCGCAAGAGGACCCTGAGTCAAGGAGAACGCCAGGCCTCTTCATCAcgagcctcctcctcctcatcatcacagCAACGCCCCCTTTCCGCAGACCTGGGCTCAtggAGGCGAGAGCAGGAGTTTGACCTGCAGTTGCTGGAGCGGGCTGTGCAGGGGGAGGAGGCGCGGGGTGTGGTCCAGGGTGAGGAGTGTCCAGCAGAGCACAGTGATAGACCTCGGTCCCAGTCAGATGAGTGGCTGACCCTCCGCTCTACAGCCACGTCCACACTTACCCAGGAGGTGGACCCGGAGACTCTGGACTATGACCTGGACCTCAGCCGAGAGcTGGCCAAACCTCAGAAGGTGTTAATCCCTGAGCGCTACATAGACACAGAGCCTGAGGAACCTCTCAGCCCTCAGGAGGTGGAGGCTCGCCATCGCAACATGGAGCGCATCAAGAACATTCTGGCCAAGTCCAGTGTTCAGATCCTGGCGGGGCCCTCTGTGGCGGTGGACCAGCCAGAGGTGGTGGGTCTGGACTCAGCCCTACTGAAGCAGGAGAGGATCATCACCATGTCTTACGCCCTGGCCTCAGAGGCCTCCCTCAAGAGCAAGCAGGTTGCAgTAGTACCACTGCAACCTAACATCCCCACCgtgcctcctcctccacctcctcctccacctcctcctcctcttcctcctgtctctcaggcacctccccctcctcctcctctaagcAACGGATTTCACTTCTCGTTTGTCTAATCAGAGAAAACAAACCAATGCGCTTTCTGGACACTGAGGTGCTGTTCCATGATGACAATACAACCTTGATTCTTGAAGAAAGAAAGACTTTGTTTGGTGCTGACAGTTACACTGTTATACAGTAGATGAGTGTTAGTGAACATTTAACCTGCCCTCAGTAGCACGCAGCAGGACTTACTCGCTGATGCATTTTTAGGAGCTAAAATTAAGTAACTATTTTCTTAAGAAAATGTATGTCTGCCGTGAAAGCTGCTGTGCATATTAACTTTGGAAGTGTCTAACAGATGTTAATCCCATAATAGAAAATGGTTTTATACACGTTATTGCACTTTTAGCATTATACTGTATCATAGTGTAGAACTGAAAGAGATATTTTCAAGCTGAGAATGTTTCGTATTGCAGTGTGATCTGAATTTGGAGGgaacttgtatttttttttttaaagttaatgAGAGTATTCACCAACTGAAAGGTCGATATGAACATGATAAGGTACTGAACATGTGTCATGTTGATTGTATTTTTGTCAAAACTCAGACCATATTCTTACACCAAATCACTTGAAATGTCATTTGTGTTTGTATCTAGCACTGCCAGTCTCTTAATGGCTTGccaaattgatttttatttttgcTTACAACATTGGGAGGAAAATAACATTGAACATAGTATTTTCTGGATGGCTTGGGCAGGTTGCACAATGATAATTATTACAAATGTAAATATTAAAGATATTAACATGACATTTGCCTTATAAATGTTTTGTCTTCAACAACCGACTCATGCAGTAGTCGTAATAACCTTTATAAAATGATAACGGTATACTGAGGTATTCAGAGAATGTGAACCCCCAAAACTCTTTGGTCTTATAGCCCATTGTACAGTTTTTAATTTAAATCATATGATATTGCGTCAGTTTAATAATTGTACTACTCTGTGGATGACAGTTGAATAATATGGTTGACTGTGTTGGAATCTTCAAAACCCTTTATCTTGTGCCAGTTCTGATAACCTTCTCTTCATGCTGACCAAAAAGTACAAAATGTAGCCTCATCACAGCTCCAAGGATTCTCTTTGAACATTCCTATTGATTGCTTTGCCCTGTTACATTTCATTCTATTATCTGAGAAGGGAATCCAACTTTACAGGCTCAAACCAAATGAGGCAAACTTTCAATACAAAAAACCATGAAATGTTTCTTTAGTTCAAAGCTTCTCCTTCTTAAAGGGCATTTTCTATTCCGTGTCTCTACATTTTCAACTGGGAAGGTGGGTAGTAATAGCATTGGTGTATCTGAAGCATAGaatttatatattttaaatcaaAGATCTTTTACTTTGTAAAATAAACCTATAGAGACGAACATGGCATTGAACTTATGAATCAAAGCTGATGGAATTATGATTCTAAGCTTTTTGTAACTTACTTTTTCACATGTTCTGTAAATGGAAGGTCAGCTATATAAAAGTCATGACTAGAATCAATTGCAATTGTTCTGTCAGTCCTATACATAATTCTACAGTCCTAACATATTCGTATAGCATGTACTGGTATCTTGCTTATAGGCTATGCTCCTTTGGCTGGTGGTCCAGTAGACTGCTCTCACCTCCCTTGTGAGATCTTTATCTTTAATTGGAGAGTAATTACATACACTTGTCTGCATGGTACTCTTTGAAAACACCTGTGAGAGGGGATGTGAGAGGGGATGCACCTCCCAGAGCTCCACAGTGGGAGCTGccacatctcctctctctccatgccatCTCGAGGAGTGGGAGTGTGGGCCCCAGAGTGCCTGCTAGTCCTGGTGGGTATAAGACCCATCACATCCGCTATTCTGCTTATTTTGCAATAAATGGGCTGTTTTTTTCCTCCTCCAGCAGAAATTCACCCAAGACCATCCACTGAGGATTGTGGCATTTCCATTTATTGACGTTTGGCTGCTGGTTCATATACATTTGTTATGCTATGCTCTGGACTTCAAAGAGAATGAAATAGGGCCTATTATGCTAATTCTGTCTTGTTCTGTTCAACGTAATCAAGGCCTCACACATTCATCCTTTACAAAATGTTCCTCACTGACTCTAGGAAAAGGTTTTCAAACGTACATGAATAGAAAAGGGAATTCCAGACTTTCCCAGTAGACTCCAAAATCCCGTAATTGAGCACTTGGGGGGAGACAACCTTTAGTCATTTTGAAACTATAAATGATTAGAGAATTTGATATGAAATCCAGAGTAAACAATTGTGAAAAACAGTGAATGTTTCTCTTCCTACATGATTGTAACAGGGTGGATCTGTTTGTTGGTAAACATGCCCCATGTTAACCCTTGCCAGTCCCAGGTATAGCATGTTTCCATAAAGGGCATGGCCCTGGGTATTTAAGCTTGACTTTTTGTGTCATTCACAATATTCCATGACCACTAGAAGGCTGGTGTGTGCAAGGAGGATGGTCTAGTAGTGAAAGCCCAGTCAGTGTCTCTATTAGACACCATAGGAATCCTGACTGGACTCTGATTGGACATGAGCTGAACCAAAGGATCCAACACAAAAGGTACTTTGATTCCAAAATGGTCTTTTATGCTCTTTTATCATCTCGAAATCAATATACATGCTTTAATAAGGGATGGGCTGGTGTTCAATTATTGAACAGTTAAGAATTATTGAATATTCTCTCCCAACACACTGTACATGCCTACATaaaatgaaaataataaaatgaaCCTGTAACTTTTTAAGACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU614941 lncRNA upstream 10943 73083687 ~ 73085986 (+) True G543050
TU614902 lncRNA upstream 59905 73036443 ~ 73037024 (+) True G543017
TU614901 lncRNA upstream 61474 73035114 ~ 73035455 (+) True G543016
TU614896 lncRNA upstream 64169 73032511 ~ 73032760 (+) True G543014
TU614895 lncRNA upstream 64595 73032116 ~ 73032334 (+) True G543013
TU615370 lncRNA downstream 904 73183646 ~ 73183904 (+) True G543414
TU615389 lncRNA downstream 13694 73196436 ~ 73200010 (+) True G543426
TU615400 lncRNA downstream 37289 73220031 ~ 73253625 (+) True G543435
TU615378 lncRNA downstream 207340 73390082 ~ 73392251 (+) False LOC100136290
TU615380 lncRNA downstream 207340 73390082 ~ 73392251 (+) True LOC100136290
XM_021607593.2 mRNA upstream 76928 73016213 ~ 73020001 (+) True LOC110526541
XR_005052450.1 mRNA upstream 77229 73019572 ~ 73019700 (+) True LOC118965119
LOC118965096 mRNA upstream 77672 73019055 ~ 73019257 (+) True LOC118965096
XR_005052444.1 mRNA upstream 79390 73017408 ~ 73017539 (+) True LOC118965112
XM_021604998.2 mRNA upstream 83505 73011717 ~ 73013424 (+) True LOC110525049
XM_036979115.1 mRNA downstream 8237 73190979 ~ 73392249 (+) False LOC100136290
XM_036979116.1 mRNA downstream 8237 73190979 ~ 73392249 (+) False LOC100136290
XM_036979119.1 mRNA downstream 8237 73190979 ~ 73392249 (+) False LOC100136290
XM_036979122.1 mRNA downstream 8237 73190979 ~ 73392249 (+) False LOC100136290
XM_036979123.1 mRNA downstream 8237 73190979 ~ 73392249 (+) False LOC100136290
TU614766 other upstream 330078 72765681 ~ 72766851 (+) True G542890
TU614654 other upstream 430057 72665460 ~ 72666872 (+) True saa
TU613870 other upstream 944535 72151020 ~ 72152394 (+) True G542100
TU613820 other upstream 994455 72101380 ~ 72102474 (+) True G542053
TU613619 other upstream 1292467 71800040 ~ 71804462 (+) True G541903
TU615384 other downstream 190063 73372805 ~ 73387687 (+) False LOC100136290
TU616612 other downstream 1105036 74287778 ~ 74288138 (+) True G544565
TU617662 other downstream 2055058 75237800 ~ 75238164 (+) True G545485
TU617795 other downstream 2239119 75421861 ~ 75422752 (+) True G545601
TU618729 other downstream 2745486 75928228 ~ 75970674 (+) True G546464

Expression Profile