RNA id: XM_036979115.1


Basic Information

Item Value
RNA id XM_036979115.1
length 8716
RNA type mRNA
GC content 0.44
exon number 21
gene id LOC100136290
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 73190979 ~ 73392251 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTTTCTGATGTTGCACGACGGGAAATGCTTTGAATACTTGCGACATGGCCGCTCACATTGATTGCCAAGATTGACAGCTCTGCGTCGTCTTCTCTTGtctctgagagagagggagataaagaggatAGATAACAACAAAAGCTCCTTGCAGTTTTGACAATTAAACTTCATAGAAAGAACGGGATCCCCTCATATAGCCAGTGGGAACCACAGCAGACTTTAgttctctttccttttctctacAGATAGTAATCGTAATGTTTTAACATAATATAGCGCGAAACACACGACTCGGGATACGATACCGTCAGGACCTGCATCTCTCTTTTCTCGGCTGATCTCAAGGACTATCTGCACGTGGACTTGTGGTTTTGCGAGAGAGAAAAACATTTCCGAACTGGATCGGGACATAAAGATATCGACTCCCTGACGCATATGGTGCCAGTCACTTTCATGAGTTCAGAATCAACTAACCAGTGATCGCTGGGTGCTGGGGGTTTAGTCTTTCTCTTTGTATGGCCTGTGTGTGATGTTCCAAAGACCTGCTCCACTCCCCTGTGCTCTTCTATCAGCCAGACCTGACACACTCATTCATCTAAATCCTATGCAACTTGAATCTACATGTTTAATTCATCATAAACGAGGCGAACCCCACACGCTGACATGGAGGGCTTTCTTCGTAGCAGCTTTTTACTGAGCAGAATAATGTCTTCCAAGCAAGCCACCTCTCCGTTTGCCTCCGTCGCCGATGGGGAGGAAGCAATGAGTCAGGACCACCTGTCCTGGGATAAGGAGGAGAGTGCCGAGGCCCACGGGACGCCCCAGCTGCCCCTGCACAGCCTGCTCCACAGCAAGGGCTCCATGGACGAACTGCAGCCCCTCAGCAGTGTCCCTCCAGAGAGTGACTGGGACAGCATGGTGTCAGCCCAGCAGCGCATGGAATCTGACAGCAATAAAGTATGTTCCCTGTACTCCTTCCGGAATAACTCAACCTCCCCACACAAGCCTGAGGAGGGGGCCCGGGAGCGCGGCGACCTGCTGAGCGGATCTGCGTTCGGAACTCCGGAGCGCCGCAAAGGAAGCCTGGCCGACGTGGTGGACACACTGAAGCAGAAGAAGCTGGAGGAGATGACAAAGTCAGAGCAAGATGAATCCAGTTGCATGGAAACACTTCTGTCAAAAGACTGGAAAGAGAAGATGGAAAGGCTCGACACCGGTGATCTTCTGGGAGAAGTTAAAGgtactCCAGAGAGCCTGGTAGAGAAGGAGCACCAGCTGAGCACCATGATCACTCAGCTGATCAGCCTGAGAGAGCAGCTCCTGGCCGCTCACGATGAGCAGAAGAAGCTGGCCGCCTCACAGATGGAGAAACAGCGACAGCAAATGGAGCTGGCCCGCCAGCAACAGGAACAGTATTATGAAGAAGGGTGTTCCATGATtgccagacaacagcagcagcTTCTGCAGCAGCAGCACAAAATCAATATCCTCCAGCAGCAGATTCAGGTCCAGGGTCACATGCCTCCGCTCATGATTCCCATTTTTCCACACGACCAGCGCACCCTGGCAGCAGCCGCCGCAGCCCAGCAGGGCTTTCTCTTCCCACCGGGAATCTCTTACAAGCCAGGTGACAACTACCCGGTGCAGTTCATTCCATCCACAATGGCAGCTGCGGCAGCGTCAGGACTCAGCCCCCTCCAGCTTCAGcaACTGTATGCCGCCCAGCTTGCCAGCATGCAGGTCTCTCCTGGAGCCAAgatgccgccactcccccagccTCCCAACAACAGCGGGCCCATCTCCCCCTCCGGCCTGAAGAACGACAAGAGATCCTCCAGCCCTATCACTCAAGTCAAGGAGGAGGGAACGCAGCCTCTCAACCTGTCCGCCCGGCCCAAGACGGCAGAGCTGGTCAAGTCCCCCACGTcccccacacacagcctgttcACAGGCAGCAAGACCAGCCCCAACAGCCTGTCCAAGAGCGGCATCCCCAGTCCCCTCGGAGGAATGGGCCGTGGGTCTTCTCTGGACATCCTGTCCAGCCTGAACTCCACAGCGCTGTTCGGGGACCAGGATGCGGTGATGAAGGCCATCCAGGAGGCCAGGAAGATGAGagaacagatccagagagagcagctgcagcaccaccagCAGGGCATGGAGGCCAAGCTCTCTGCCCTCACAGGCATGGGCCTCAACAACTGCAGCAGGGCTGACAAGAGCTGGTTCACTGAGTACATTGAGCGGGCACACTTTGAGAGCCTTGGTCACCACCTTAGCAAACTGGGCGAGGATGGCAAAATTGGCCACAGAGTCATCGACCTCACCAGGCCAGAGGATCTGGATGGGTGGAAAGCTCTGAATGGCTCTGGTACCGGAGCAGATAAACCACAACAGTATTATTGTTGGCCTACAGGAGGTGCCAGCACAGCCGAGGCACGGGTCTACAGAGAAGCCCGGGGGAGGAACAGCAACGAGCCCCACATCAAGAGACCCATGAACGCCTTCATGGTGTGGGCCAAAGATGAGCGCCGCAAGATCCTCCAAGCCTTCCCAGACATGCACAACTCCAACATCAGCAAGATCCTGGGCTCTCGCTGGAAGTCTATGACCAACCAGGAGAAGCAGCCGTTCTATGAGGAGCAGGCCCGTCTCAGTAAGATCCACCTGGAGAAGTACCCCAACTACAAGTACAAGCCCCGGCCCAAGAGGACCTGCATCATCGACGGGAAGAAGCTGCGCATCGGCGAGTACAAGCAGATGATGCGCTCGCGACGGCAAGAGATGAGGCAGTTCTTCACTGTGGGGCAGCAACCGCAGATCCCCATCAGCACCAGCGCCGGCGTGGTCTACCCTGGGGCCATAACCATGGCAACGACCACACCCTCCCCTCACATGACGTCGGAGTGCTCCAGCGCCTCAGCAAGCCCGGAGCCGGCCATTCCCGTCATCCAGAGCACCTACAACATGAAGATAGAGCCCAGTGCCATGTTAACCAATGACCCCATCATCAACAGAGAGGTAGATGAGATGGACATGTATGAGGACTTTGACGAGGAGCCCAAATCGGACTACAGCAGTGAGACTGAGACACTGGAGCCCATCGTCAGCGCCAACTGAGGCCTCTCAACACCTGAGCCGGGACATACACACATTCGTACTGGAGAACCATCCCCAGGGCGGAAGACTGACTgaaggaggagaaacagaagaacaAAAAAATGCAGAACAAAAATAAATGGTTCTGTTGATGCATCATTTAGGAGCCTGCATGCATATGTGGCTCCGTCAGAATCAACAGCTAAAGGTCTTAAATGTTTCTTACAGTGTGTGAAGCAGTTTGGGTTAGTTCCTTTTGTTTTTTATTATCTCATCGTTTATTTTTTGTGTTTTCTTCATGGACATTTACACAATTAGGTTATTGCCCATACAACTTTGGATGACAGGACTTGAAATGTACCGTTTGATATGAATCCATAATTCTTACAGTCTTACTTTTTTtcttatgatatatatatattatttttttctcttcAGTTAAATGCTTTTAATAGATTTCATTACTGTTTTTGATGGGAGTTATATATTCTCACTCAGGTATGCTGTGCCAGCCAACAGCTTGTGAATGTTTTAAATACGAATTTATTTGAAACTATTTAGAAAACAAAATATTTGGAAATTCATAttaactaaaaacaaacaaacagaacaATTCCACAATTCTGGGACATAATCAGACTCCCTTATTATTAATTGTATTAgcattatcattattataattattattggtattattaacatactgtacaattTTGTGCAGATGTGCCAAACGTTTGAAGGTTTTTATCTCTTAAATAATTTGTTTGAGTCTCGGGGGAGAGACTCGAGTCTCAGACAATCTCTTAGTGTGGCTTCAAAATCCAGTTTCTTTATATACCTTCTATATTGAAACCCTCAGGAATCTGGAGACAGTGTGCTGTGTCTAGGGCAGGAACAGGAAGTGATGCAATAGCTTCAGGTGTGGTTGTTCATAATGGCAGCTGTTCTCCATGGAGACCAATGCGGTGACCAACaggcccttctctccctgtccctctccagcTCATGTCACCAGCCCAGTCTAACACAGAGCACTATAACACTCCCCTCACAATCTCTGCTCATTCTTCAACTCAGTCTTACCAAGTTCTTAATCAGAGTGATTGTAATCAGGCCAGAATTCCAAGGGGCCAAAGGCATCCAATCTGTGGGATTGGAAAGGCAGCGAAAGGCAGCTTTGGGGGCATTATAATCACAAATTGTTGTTTTACAATGTGTAGCTACAGTACATTCGGTTAAACACTTTAGCCCCTACTGGGGCGGCAATTTGgtcttaacatttttttttattttttttttaatcttaaGTATTTTTTCGACATTGTAAATCTTAAATTGACACGGGAAGGTCTTAAAGCAGAGTTAACTACTGCAGCAGTCTTAAGAGAAGAGGCAGTGTGTGAGGGAATAACATTGTGTTTTTATTAAAGGAGGGTTACAGACAAGGTATTACATTCTAACAAGTCATATTAAACACAACAGTATTTCATAAGCCACACCAGAGCTGTGATGGTGATTCTCTACATTCATGCACTTAGATATTAACACTTACTACTTCATTTTTCAACTGAGTTAATATGTTATATTGAACAAAATGTTTGTTGTTTTATAATGGCCAGTTGCCTATTTTACATAAAGTTAAATGTAAGTATTTTAGAGCAATTGAAAATGCACTTCTGTATTTTATTTACATACAGACAATGAGTATGAAATATAACACAATCAATCAGCTCTTAATCTTGTGACAATCAGTCACAAACTGAAAGTCCTTTACCTCTTGAATGGTCCTTTTACCAGTTGAACAGATCCCAGGTTGTTACCTATGGAGAAACAGCTAGAGATGGCCAGCAGTCAAGGCCTTACTGTCCATAATGTAGCCCTCCTACAGGCCAGAAGGACTAagtgcctccctctctgccctgccctgtctcgACCCCTTCCCATGGCAACCCCCACACCCAGGGGGTGCCATCTGGCTCAGAGTGGCAGGCAGCGCTatgctggggagaggagagagggggaacaatAAGGACGGGGCACGTAGCGCTTATTGTGCTCTCCATCAAAGCACAGACAGTGAGGCTCCCACCCCGTCTCCCGCCCTGGCCCAACCACTAGGCGCTGGCGAGCAGATGGAACAAGTACATCAAGCTGTGGGGGATTACTAAAATGACTGACGAGTGGGTATCATCTCAAATGCAGCATTATTAATGCATGAGCCCGGCTATTCTCCTCCCGTGCCCTTGAACCTGTCCATTTCAGACCAAGCCCAGAGGTTTAAAATGATCTAAATGGCTGGTCACCAGCGCTGGCTGTCTACATGGCCAGGACTCCCTCCTACTGCTGGTCACTGCATTACTCTCCCAGGTCTAATTGATACAGATGGCTCTTTAGTACTTAAAATTTTTCTCGACCCATTCAGAGCTGGCTTTTATTGTGTTGTGTCTACGTTTGAAGCATTTATCTTAAGTCTTAGAAGTTTTTAAGCACCTCATTATTAATTTCCATTTCagtttctttttatttttttggttGGTTGGTTTCTTTGTTGCTATTGTTGTTTTAAGGTACAATGCTTTTTTCTAGGATTTCCTCCCATACACAAACCTAAACGGATTTCCCTCCAGGTCAACATGTCTAGGTTTTTAAGCTGTTACTTCTGTTTtctggttgattggttgatttgtACGTGATTTGTACATATTTCTATGTCCATGCCAAACCAATTCAGTGGGCTGGTAGTTAAAAAAGGACTGTTGATAGGACTGAAACTTGACTGCGCTTgtataacaaacaaaacaaaaaaaacgatGAACTTATATCTCGCAAGGAGACAATGTTTCATAAGTGTTATAAGCACTGGatataaattgtatttttatcAATTCTGACTAATGTGAAGCTGTTGTACCAGAAAAAAATCTGAATGAACAAAAGTCCCGATGAGTTGGACTCGTGGGCTCATTCTCACAGTTACCAGATTTGAATCATTTTTCAGTCgtcttgttttgtttatttatgcAAAGACATGTGTAGTGAATGAACACTTTGTCTAAGCTCCAGGGCCAccaaggggagagagacagcgcGCGAGAGAGACTGAGTAGTAAACTCGACAGAAGGCTTGCATAGTAACTGGTTAGCTGAGAAACACCGGATTTCAGAcacacattttattggtcacatatgttttgttttgtatattgtatttGAAGCTATATAGTGAGAATatacattttattgtatttattagcCACTGTTGGCTCTAAAATTGTCAGTAGAACATAATGAAAGGACaatcagagagaaaaaaaagatgtTTAATGAATTGGAGCTTCATTTTTCAATAAATTCACCATTTCATTATAGATTTTATTGTAAATACAACATAGGAaatataattatatttttgttcataagTACTTAGTGAAGTATAAGTTATGTATTTGGCTGttctttttttcttccttttttacATCAGTGTATGTTGATCCATGTTCTTAAAACTGACAGGTCATTGTACGTCATGTAGATTCTGATTATTTCTCCCAGTTGAAGAGAGCAGTATTGGACGGTTGAGAGAGCAGTATTGGACGGTTGAAGAGAGCAGTATTGGACGGTTGAGAGAGCAGTATTGGACGGTTGAGAGAGCAGTATTGGACGGTTGAAGAGAGCAGTATTGGACAGAGCTGTAGctgagatagacagacaggcccCTTCTTGCTAGCGTTTCAATGACCTCCCTCAGACAATTCAAGGAGCCAATCAAAACCCAAGCCGTACTCCTTAGCCTTAGACATTAAGGACAAACATTCTTTTTTATAAATAACTTCATTTGTATCTAATTACATGCAAAGCCGGTACAAATAAAGTACTCTGTATCTTTCATAGGGACAGTGCTAAAATTCATCTGAACAACAAGCCGTTAAGATGCATATGTTTTTATTATACAACTTGCGTTTGCAATCATGACTCAATCCTAGCGACATACCTTATgacttgtgttttgtgtttttcacAGCCCTCAGTGGTTATACTGTTATGTGCCAAATTTGAACGGAGGGGTTGACAGTTGCATAAATGAATAGCTACATTTTAATTGCACATCTGCATGCATTTGTTACATTTAAAATTAGAATGACCCAAGAGGATTTTATTCATTGGCAATTTTACACAAGTTCTTGGGGATCTGAAAATGAAGGGAGTGTGCAAATATTTATTAGTTTTAACGTGGCACAATGCAGAGCCACTTGTGTGTATTCTAGGCCTATACTCTTTTTGTCCTTTTCTATGTGTTGCTGACCTTTTTAAAGGTAGCCCATCCAGCCATCAGCAAAGTGTAGTCATGACCTTTTCTATGTGTTGCTGACCTTTTTAAAGGTAGCCAATCCAGCCATCAGCAAAGTGTAGTCATGACCTTTTCTATGTGTTGCTGACCTTTTTAAAGGTAGCCAATCCAGCCATCAGCAAAGTGTAGTCATGACCTTTTCTATTAATCCATCTGTCTCTCAGCCATGTAAATGCGAACAAAATTCAACAATTGAAGACAAAGCTTGTATGCTGTTTCAATAACTTAACTGTAATTATTTTTTTTCTGTCATTGAACTTCGTGATGTATATGGTGGGAATGTTCTCTGTGTTAATTTAATTAGCACAATTCACTGACATGCTGGACTGACATGCTAGCTGCTGTTCAGGAGTGTAACATTTGCTGTTGGGGACAACTTATAGAGTTGTCAATGGTACTTTGCTTTCTAGATTCATTTTTTGTCTCTCAAGCAACACTGTGTGTGGCTCTTCTGTCGCTGGGGCTGTTGCTGTTTTGAAACCGCTGGCAGACTGATACAGTTTTCTGCGTAGAAATCAATTTCTTGGCAGGTACCTAGGCCCATGGCAGGTATTGTTTGGGCGTAACTAGAGAAAATGATATAGTGTCTGTTGCTGCTTTGAAAAAAAGTTTTAATTCTGAAAATGTAAATAGTTTATCATAATATCTTGTACAGTCCAGTGTAAAGTTTTTAATTGAACTTAAAAAAAGGTTGCCATCACATTTGTGTTCACTTTCTTCTTCATACAGTACAAAAGGACAGCTACGTGCTGAGGATATTAttgttaaaataaaaaaaggaaaaggtactaaaatattttattttgctTGGCTTCAAAATGTAAACCAGCAAGTCTTTGGTTTCCATGTGCAGTATTGACGTGAGGTAAACTTAAGGTGAAATAATTCTACAGTGGTATGTATTGGAGACCAGTCTCCTCTGTGTTGGTAGTATTAatacactatatcaaataaaatacacCAGATGACTGACACATTTGGGTGTATCTAGGCACCTTAGTAATGTGTGCAAATATCTAGGCTGTGTTCCCCACAGGATGCATTCAGGCATATTGTAATGTAACATCATCTTTCTATATGTACTCAATCCATTGATGTAACAAGGCAGGAGTGGGTTGTTTAACTGCCTGTTTAAGCTCATTTACCTCAAGAGTTTCCTCCTTTTGCGTAAAAGAGTAAGAAATTGTGTGACAAAGTCTCACCATCACTCCCATATTTTGTACTGCTGTTGACACTTACAAATTAAAGAGACATTTTGTTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU615370 lncRNA upstream 7075 73183646 ~ 73183904 (+) True G543414
TU614941 lncRNA upstream 104993 73083687 ~ 73085986 (+) True G543050
TU614902 lncRNA upstream 153955 73036443 ~ 73037024 (+) True G543017
TU614901 lncRNA upstream 155524 73035114 ~ 73035455 (+) True G543016
TU614896 lncRNA upstream 158219 73032511 ~ 73032760 (+) True G543014
TU615631 lncRNA downstream 20464 73412713 ~ 73412931 (+) True G543650
TU615637 lncRNA downstream 24636 73416885 ~ 73417159 (+) True G543656
TU615652 lncRNA downstream 36196 73428445 ~ 73428654 (+) True G543671
TU615677 lncRNA downstream 54946 73447195 ~ 73447462 (+) True G543696
TU615685 lncRNA downstream 59548 73451797 ~ 73452020 (+) True G543704
XM_036980923.1 mRNA upstream 8237 73037953 ~ 73182742 (+) False LOC110526543
XM_036980924.1 mRNA upstream 8237 73037954 ~ 73182742 (+) False LOC110526543
XM_036980925.1 mRNA upstream 8237 73037954 ~ 73182742 (+) False LOC110526543
XM_036980928.1 mRNA upstream 8237 73037954 ~ 73182742 (+) False LOC110526543
XM_036980926.1 mRNA upstream 8237 73037955 ~ 73182742 (+) False LOC110526543
XM_021607596.2 mRNA downstream 224579 73616828 ~ 73634948 (+) True LOC110526546
XM_021607597.2 mRNA downstream 333878 73726127 ~ 73731840 (+) True LOC110526547
XM_036980936.1 mRNA downstream 341548 73733797 ~ 73741617 (+) False copb1
XM_021607600.2 mRNA downstream 341556 73733805 ~ 73741617 (+) False copb1
XM_021607599.2 mRNA downstream 341572 73733821 ~ 73741617 (+) True copb1
TU614905 other upstream 45632 73038621 ~ 73145347 (+) True LOC110526543
TU614766 other upstream 424128 72765681 ~ 72766851 (+) True G542890
TU614654 other upstream 524107 72665460 ~ 72666872 (+) True saa
TU613870 other upstream 1038585 72151020 ~ 72152394 (+) True G542100
TU613820 other upstream 1088505 72101380 ~ 72102474 (+) True G542053
TU616612 other downstream 895529 74287778 ~ 74288138 (+) True G544565
TU617662 other downstream 1845551 75237800 ~ 75238164 (+) True G545485
TU617795 other downstream 2029612 75421861 ~ 75422752 (+) True G545601
TU618729 other downstream 2535979 75928228 ~ 75970674 (+) True G546464
TU619876 other downstream 3495183 76887432 ~ 77036313 (+) False LOC110526968

Expression Profile