RNA id: TU615384


Basic Information

Item Value
RNA id TU615384
length 1811
RNA type TUCP
GC content 0.46
exon number 4
gene id LOC100136290
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 73190979 ~ 73392251 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCAAACTGGGCGAGGATGGCAAAATTGGCCACAGAGTCATCGACCTCACCAGGCCAGAGGATCTGGATGGGTGGAAAGCTCTGAATGGCTCTGGTACCGGAGCAGATAAACCACAACAGTATTATTGTTGGCCTACAGGAGGTGCCAGCACAGCCGAGGCACGGGTCTACAGAGAAGCCCGGGGGAGGAACAGCAACGAGCCCCACATCAAGAGACCCATGAACGCCTTCATGGTGTGGGCCAAAGATGAGCGCCGCAAGATCCTCCAAGCCTTCCCAGACATGCACAACTCCAACATCAGCAAGATCCTGGGCTCTCGCTGGAAGTCTATGACCAACCAGGAGAAGCAGCCGTTCTATGAGGAGCAGGCCCGTCTCAGTAAGATCCACCTGGAGAAGTACCCCAACTACAAGTACAAGCCCCGGCCCAAGAGGACCTGCATCATCGACGGGAAGAAGCTGCGCATCGGCGACAACCGCAGATCCCCATCAGCACCAGCGCCGGCGTGGTCTACCCTGGGGCCATAACCATGGCAACGACCACACCCTCCCCTCACATGACGTCGGAGTGCTCCAGCGCCTCAGCAAGCCCGGAGCCGGCCATTCCCGTCATCCAGAGCACCTACAACATGAAGATAGAGCCCAGTGCCATGTTAACCAATGACCCCATCATCAACAGAGAGGTAGATGAGATGGACATGTATGAGGACTTTGACGAGGAGCCCAAATCGGACTACAGCAGTGAGACTGAGACACTGGAGCCCATCGTCAGCGCCAACTGAGGCCTCTCAACACCTGAGCCGGGACATACACACATTCGTACTGGAGAACCATCCCCAGGGCGGAAGACTGACTgaaggaggagaaacagaagaacaAAAAAATGCAGAACAAAAATAAATGGTTCTGTTGATGCATCATTTAGGAGCCTGCATGCATATGTGGCTCCGTCAGAATCAACAGCTAAAGGTCTTAAATGTTTCTTACAGTGTGTGAAGCAGTTTGGGTTAGTTCCTTTTGTTTTTTATTATCTCATCGTTTATTTTTTGTGTTTTCTTCATGGACATTTACACAATTAGGTTATTGCCCATACAACTTTGGATGACAGGACTTGAAATGTACCGTTTGATATGAATCCATAATTCTTACAGTCTTACTTTTTTtcttatgatatatatatattatttttttctcttcAGTTAAATGCTTTTAATAGATTTCATTACTGTTTTTGATGGGAGTTATATATTCTCACTCAGGTATGCTGTGCCAGCCAACAGCTTGTGAATGTTTTAAATACGAATTTATTTGAAACTATTTAGAAAACAAAATATTTGGAAATTCATAttaactaaaaacaaacaaacagaacaATTCCACAATTCTGGGACATAATCAGACTCCCTTATTATTAATTGTATTAgcattatcattattataattattattggtattattaacatactgtacaattTTGTGCAGATGTGCCAAACGTTTGAAGGTTTTTATCTCTTAAATAATTTGTTTGAGTCTCGGGGGAGAGACTCGAGTCTCAGACAATCTCTTAGTGTGGCTTCAAAATCCAGTTTCTTTATATACCTTCTATATTGAAACCCTCAGGAATCTGGAGACAGTGTGCTGTGTCTAGGGCAGGAACAGGAAGTGATGCAATAGCTTCAGGTGTGGTTGTTCATAATGGCAGCTGTTCTCCATGGAGACCAATGCGGTGACCAACaggcccttctctccctgtccctctccagcTCATGTCACCAGCCCAGTCTAACACAGAGCACTATAACACTCCCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU615400 lncRNA upstream 119180 73220031 ~ 73253625 (+) True G543435
TU615389 lncRNA upstream 172795 73196436 ~ 73200010 (+) True G543426
TU615370 lncRNA upstream 188901 73183646 ~ 73183904 (+) True G543414
TU614941 lncRNA upstream 286819 73083687 ~ 73085986 (+) True G543050
TU614902 lncRNA upstream 335781 73036443 ~ 73037024 (+) True G543017
TU615378 lncRNA downstream 2395 73390082 ~ 73392251 (+) False LOC100136290
TU615380 lncRNA downstream 2395 73390082 ~ 73392251 (+) True LOC100136290
TU615631 lncRNA downstream 25026 73412713 ~ 73412931 (+) True G543650
TU615637 lncRNA downstream 29198 73416885 ~ 73417159 (+) True G543656
TU615652 lncRNA downstream 40758 73428445 ~ 73428654 (+) True G543671
XM_036980923.1 mRNA upstream 190063 73037953 ~ 73182742 (+) False LOC110526543
XM_036980924.1 mRNA upstream 190063 73037954 ~ 73182742 (+) False LOC110526543
XM_036980925.1 mRNA upstream 190063 73037954 ~ 73182742 (+) False LOC110526543
XM_036980928.1 mRNA upstream 190063 73037954 ~ 73182742 (+) False LOC110526543
XM_036980926.1 mRNA upstream 190063 73037955 ~ 73182742 (+) False LOC110526543
XM_021607596.2 mRNA downstream 229141 73616828 ~ 73634948 (+) True LOC110526546
XM_021607597.2 mRNA downstream 338440 73726127 ~ 73731840 (+) True LOC110526547
XM_036980936.1 mRNA downstream 346110 73733797 ~ 73741617 (+) False copb1
XM_021607600.2 mRNA downstream 346118 73733805 ~ 73741617 (+) False copb1
XM_021607599.2 mRNA downstream 346134 73733821 ~ 73741617 (+) True copb1
TU614905 other upstream 227458 73038621 ~ 73145347 (+) True LOC110526543
TU614766 other upstream 605954 72765681 ~ 72766851 (+) True G542890
TU614654 other upstream 705933 72665460 ~ 72666872 (+) True saa
TU613870 other upstream 1220411 72151020 ~ 72152394 (+) True G542100
TU613820 other upstream 1270331 72101380 ~ 72102474 (+) True G542053
TU616612 other downstream 900091 74287778 ~ 74288138 (+) True G544565
TU617662 other downstream 1850113 75237800 ~ 75238164 (+) True G545485
TU617795 other downstream 2034174 75421861 ~ 75422752 (+) True G545601
TU618729 other downstream 2540541 75928228 ~ 75970674 (+) True G546464
TU619876 other downstream 3499745 76887432 ~ 77036313 (+) False LOC110526968

Expression Profile