RNA id: XM_021607596.2


Basic Information

Item Value
RNA id XM_021607596.2
length 3253
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC110526546
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 73616828 ~ 73634948 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAGCCAAACTTAGCCTTGTAGAGGGAGAAGTATCCTATTGGGTAGAGGCATGGGATAGAAACATGTGCAAGatgatatagcctacataactctTTCACAGAGGAGAGCTTAGTACAGACAGCAAagttagagagagaaaaatggtATTAATTCAGTTATCATCCCTAGTCTCAGAAGTGTCGCATGGACAGGCTTTCTTAGGTCTGTGTAGTTTACTTATTTCCCTTATTGTTATTTTGCTGATCCGGCAGCTTGTGAAGCAGAGGAGACCACGAGGATTCCCTCCTGGACCGTCACCTATCCCTGTCATAGGGAACATTATGTCTCTAGCAACAGAACCGCACGTCTTTATGAAGAAACAGAGTGAAATCCATGGGCAGATTTTCAGTCTTGATTTGGGAGGCTACTCAGCAGTGGTTCTGAATGGATATGATGCCATCAGAGAATGCCTGTACCACCAGGGTGATGTCTTTTCTGACCGGCCATCGCTGCCTTTATTTATGAAAATGACAAAAATGGGAGGACTTCTGAATGCTAAATTTGGCAATGGATGGATTGAACATCGTCAACTGGCCAGCAACTCCTTTCGTTACTTTGGCAGTTTTCAAAAGCCCCTCGACCAGAAGATCCTGGAAGAGTGCATGTTTTTTGTGGATGCCATCGACGAACACAAAGGGAAACCCTTTAACCCAAAGCACCTGGTGACCAATGCTGTGTCCAACATCACCAACCTCATCATCTTCGGCGAGCGTTTCACGTACGACAACTGTGACTTCCAGCACATGATCGAGATCTTCAGTGAGAATGTGGAGCTGGCTGTCAGTGGCTGGGCCTTCCTTTACAACGCCTTCCCATGGATCGAGTACCTCCCCTTTGGAAAGCACCAGAAGCTGTTCCGCAACGCAGCCAAGGTCTATAACTTCCTGGAGCAGATCATCAGGCGCTTCTCGGAGGGCAGAGTGTGCAACTTCCCGCGCCACTACATTGATGACTACCTGAACAAGTTGGACAAGAGTGCTGGCGACTTGGGCACCCCGTATTCCAGGGAGAACCTAATCTACTCTGTGGGCGAGCTCATCATCGCAGGCACGGAGACCACCACCAACACCCTACGCTGGGCTATGCTCTACATGGCCCTCTACCCCAACATTCAAGAGAAGGTGCATACGGAGCTGGACAGTGTGCTGGGAAGTGAGAAGTCCCCCTCGCTTGCAGACAAAAAGAGGATGCCCTATGTGGAAGCGGTGCTACATGAGGTCCTGCGCTTCTGTAACATTGTGCCCCTGGGCATCTTCCGCGCCACCACTCAGGACACACTGGTGAGCGGCTACAACATCCCCAAAGGCACCATGGTCATCACCAACCTGTACTCTGTGCACTTTGATGAGAAGTATTGGTGCGACCCTGGAACCTTCTCACCACATCGCTTCCTGGACAGCAATGGAAACTTTGTCCGACGGGAAGCTTTCCTACCCTTCTCTCTGGGGAAGCGTCACTGTTTGGGCGAGCATCTGGCCAGGATGGAGATGTTCCTGTTCTTCACCACCATGCTGCAGCGCTTCCACCTGCAGTTCCCCCCCGGCACAGTGCCAAGCCTCACCCCCAAACTGGGCATGACACTGCAGCCGCTGCCTTACTCCATCTGCGCCGTCCGCAGGCAGCAGTGACAGATTCTCAGAAGGCACAGCCcgaaggggtgggggggttgggggTTTAGTCAGAACAGAACAGGGGTCTAGAGCTTGGACTCCTACCCTGTGTTTTACACAGAACTGCTAGAATTCTAAACATCAGCCGATGGTTGTTTCTGAGCAATTGCATGTTTGCACAGCACCATTTGCAAAGTCACAGGATCACCAGAAATGTTACTGGCGAGATCCGGAAATATCAGGTGGAACTTCTCAGTAAGTTTAATCGAGAAGATAAGAAGTGTGAAtatttaaacaatacatgcagaCATATACTATGAATTAATCTTGAATTAGAATTGACTTTTTATCTGTGTCCTTATAATCAAATGTCTCATCTTCCCTGCGGGATTACATCAATGATTGACAGGATGGACCTCTATGATGGTTCACagccctgtcttctctctcacaGCCTGCCTAGATGAGAAATAGGAacattacccactgggcacacactggttgaatcattgttgtttccatgtcatttcaatgaaattacattgaacctacgtggaatagacattgaattgatgcCTATTCCCAGTGGGTAGTTTCAGCTGTTTCTACAGCACAGTGAAAATAAGTAGACTAGCAGCCAGCTTTTCCTAGAAGGCTCTGGACATGGTGTTTAGTCTGGATCAGTGCCATATCAAGCAGTCTGAACTAACAATGAACCCGATCTCTCTAGGGATTCTTCCATGGAAAAGCCTTCTCTCAGAAAGCCACTGCAATATTCGTTGAAAATGTCTTTGTGATGCTGTCCTTTGTGATTTAAGTAAATTTGACTTTTGTCTATTATGGTCATACTTTGTAATAAGAACAATGCCGTTTTGGTACTCCACTTACCTTTCTTACAATGTTTATGGTGTGCCTTTCCTAAGACAAATTCAAGTTAGATATGTTTTATGCCGCTTGTTCTTTTTCTTCAACATGCTGACAGTATTTCTCTCAATAAGTTATAggaaacatttctggagagaaaaCATAGGTCTATCTAAACTACAGTACAGGACTAGTCAGACATGGACTTTTGCAGTGAGCCGGCAGAATGTGTCCAGACTGGGTCGTCCAGGGATACACAGACACTATAAATAATCTTCATGTTGTTGGAGCTGAGCCTGGGAGGGCGTCACCCATTTCCTTAAGTGACCTCTCACTTCTACTCAACAGACCAAAGGGCTAGAAAAAAAACTCAAATGCTGTGCTGTGCATACATCAGACTTACTGGGTAATATTTCATATTGATGTAATGTCTCTGGCTATTTTTGGCACTCAGCATACCTCTAACTACTAACTGCACTTCTCAGAAAGTTATGCTGAGGTAGACAGACTGCCAATTCGCCTGGATGAGCGCCTTGTTTGTGTGCATTGAAACTGTAACATTGCAGTCGTTTCAGCAAACATCAGTGTTCCAACTGTGGTTGTTGGCAGGAGGATCTAAACACTTCAAGGACAAAGTTATAGTACAGTTACATTCAAGGGGATTtttatgccacacacacacacacagttacaattgagtaggtgtgtgtatgtatcaatAAAATTATTTGAGAGAACA

Function

GO: NA

KEGG:

id description
K07419 CYP2R1; vitamin D 25-hydroxylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU615803 lncRNA upstream 54235 73562367 ~ 73562593 (+) True G543822
TU615801 lncRNA upstream 68624 73547876 ~ 73548204 (+) True G543820
TU615799 lncRNA upstream 69085 73547201 ~ 73547743 (+) True G543818
TU615791 lncRNA upstream 76082 73540538 ~ 73540746 (+) True G543810
TU615764 lncRNA upstream 105888 73510642 ~ 73510940 (+) True G543783
TU615872 lncRNA downstream 18 73634966 ~ 73636604 (+) True G543890
TU615963 lncRNA downstream 90259 73725207 ~ 73725676 (+) True G543978
TU615987 lncRNA downstream 136222 73771170 ~ 73771497 (+) True G543997
TU616003 lncRNA downstream 223377 73858325 ~ 73891981 (+) True tub
TU616308 lncRNA downstream 300779 73935727 ~ 73935939 (+) True G544292
XM_036979115.1 mRNA upstream 224579 73190979 ~ 73392249 (+) False LOC100136290
XM_036979116.1 mRNA upstream 224579 73190979 ~ 73392249 (+) False LOC100136290
XM_036979119.1 mRNA upstream 224579 73190979 ~ 73392249 (+) False LOC100136290
XM_036979122.1 mRNA upstream 224579 73190979 ~ 73392249 (+) False LOC100136290
XM_036979123.1 mRNA upstream 224579 73190979 ~ 73392249 (+) False LOC100136290
XM_021607597.2 mRNA downstream 91179 73726127 ~ 73731840 (+) True LOC110526547
XM_036980936.1 mRNA downstream 98849 73733797 ~ 73741617 (+) False copb1
XM_021607600.2 mRNA downstream 98857 73733805 ~ 73741617 (+) False copb1
XM_021607599.2 mRNA downstream 98873 73733821 ~ 73741617 (+) True copb1
XM_021607601.2 mRNA downstream 109951 73744899 ~ 73789243 (+) False rras2
TU615384 other upstream 229141 73372805 ~ 73387687 (+) False LOC100136290
TU614905 other upstream 471481 73038621 ~ 73145347 (+) True LOC110526543
TU614766 other upstream 849977 72765681 ~ 72766851 (+) True G542890
TU614654 other upstream 949956 72665460 ~ 72666872 (+) True saa
TU613870 other upstream 1464434 72151020 ~ 72152394 (+) True G542100
TU616612 other downstream 652830 74287778 ~ 74288138 (+) True G544565
TU617662 other downstream 1602852 75237800 ~ 75238164 (+) True G545485
TU617795 other downstream 1786913 75421861 ~ 75422752 (+) True G545601
TU618729 other downstream 2293280 75928228 ~ 75970674 (+) True G546464
TU619876 other downstream 3252484 76887432 ~ 77036313 (+) False LOC110526968

Expression Profile