RNA id: XM_021607599.2


Basic Information

Item Value
RNA id XM_021607599.2
length 3401
RNA type mRNA
GC content 0.51
exon number 22
gene id copb1
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 73733797 ~ 73741617 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAAAGTAACTAATCTTCCACGTCACAGGGAAGTGGGGAACGGACAGCTCGAGAAGATCTCTGAGCAATTTACAGATGCCCAAGTAAATAAGGGACGCGACATCTGAGGCTATTTTGAAATATAGTAAACGTGCAGTAAGGTAGCTAAGTGCTTATTTCTCTATCGTAACCAAGTGCGGAAGGATTGGTTTGGGAATCATCTTAACAGTTTTGTTGATTGGGGTGCTGCAAGAGGAAAGAGGATCCATCTGGCAAAATGACAGCCGCAGAGAATGTTTGTTACACTTTGATCAATGTTCCAAATGACTCCGAACCTCCATCGGAAGTCAGTCTCAAAGCAGACTTGGAAAAAGGAGAGATCAAGGCAAAGACAGAGGCCCTGAAGAAGGTAATCATCATGATACTGAATGGAGAGAAGCTGCCAGGCCTACTGATGACCATCATCCGATTTGTCCTCCCACTTCAAGACCACACCATTAAAAAGCTTCTGCTAGTCTTCTGGGAGATTGTCCCCAAAACGACTCCAGATGGCAAGCTGCTTCAGGAGATGATCCTTGTCTGTGACGCCTACAGAAAGGACTTGCAGCACCCCAACGAGTTCATCCGTGGATCCACCCTGCGCTTTCTGTGCAAGTTGAAGGAGTCTGAGCTGCTGGAGCCCCTCATGCCAGCCATCCGCGCCTGCCTGGAGCACCGCCACAGCTACGTTCGCCGCAATGCTGTACTGGCCATCTACACCATCTACAGGAACTTTGAAAATCTTATCCCAGATGCCCCTGAGTTGATCCATGATTTTCTTGTGAATGAAAAAGATGCCAGCTGCAAGAGAAATGCTTTCATGATGCTCATTCATGCAGACCAGGACAGAGCTCTGGATTACCTCAGCACCTGCATTGATCAAGTGCATACATTTGGAGATATTCTCCAGTTGGTCATTGTGGAGCTGATTTACAAGGTGTGCCACGCTAACCCGTCTGAGCGTGCCCGCTTCATCCGCTGCATCTACAACCTGTTGCAGTCCTCCAGCCCAGCTGTCAAGTACGAGGCAGCTGGCACTCTTGTCACGCTGTCCAGCGCACCCACTGCCATCAAGGCTGCTGCCCAGTGCTACATCGACCTGATCATCAAGGAGAGTGACAACAACGTGAAGCTGATCGTCCTGGATCGTCTGATAGAGCTGAAGGAGCATCCCACTCATGAACGTGTTCTCCAGGACCTGGTGATGGACATTCTGCGTGTTTTGAGCACGCCTGACCTCGAGGTCCGGAAGAAGACCCTGCAGCTGGCCTTGGACCTAGTCTCATCCCGGAACGTAGAGGAGTTGGTGATAGTTCTGAAGAAGGAGGTGATTAAGACCAACAATGTGACGGAGCATGAGGACACTGATAAATTCAGGCAGCTGCTGGTGCGCACCCTCCACTCATGCAGTGTACGCTTCCCTGACATGGCGGCCAATGTCATTCCTGTGCTGATGGAGTTCCTGAGTGACACTAATGAGGCAGCTGCGGCTGATGTGCTGGAGTTTGTGAGGGAGGCCATTCAGAGGTTCGACAACCTGAGGCCCCTCATCATCGAGAAGATGCTGGAAGTCTTCCACGCCATCAGGACTGTCAAGATCTACAGAGGAGCGCTTTGGATCCTGGGAGAATACTGTAGCACTAAAGAGGATATTCAGAGTGTGATGACAGAAGTGCGCAGGTcgcttggagagATTCCCATAGTAGAGAACGAGATCAAGAAAGAGGCTGGGGAGGGGAAGCCGGAAGAAGAGGTGAGCGCAGCGCCAGCAGCCAAACTGGTGACCGAGATGGGCACCTACGTCACACAGAGCGCCCTCAGCTCCTCCCGCCCCTCAAAGAAGGAAGAGGACAGGCCTCCTCTCAGGGGCTTCTTGATGGACGGAGACTTCTATGTGGCAGCCTCTTTAGCCACAACCCTGACCAAAGTGGCCCTGCGATATGTCACCATAGTTCAAGACAAAAAGAGACAGAATTCCTTTGTGGCTGAGTCTATGCTGATCATGGCCACCATCCTCCACTTGGGCAAGTCCTCTCTGCCCAAGAAGCCCATCACAGACGACGATGTGGACCGCATCTCGCTGTGCCTCAAGGTGCTGTCCGAGTGTTCGCCCCTCATGAACGACATCTTTAACAAGGAGTGCCGCAAGTCCCTGTCTCACATGCTCACTGTCaggctggaggaggagaagcTATCTCAGAAGAAAGAGTCAGAGAAGCGGAACGTGCTGGTGCAGGCAGACGACCCCATTTCCTTTATGCAACTGACGGCCAAGAACGAGACGTCCTCCAAGGAGGACCAGTTCCAGCTCAGTTTACTGGCTGCCATGGGAACCACTCTTAAAAAGGAGGCTAACGACCCCATGGCCTCCAAACTCAACAAGGTTACCCAGCTGACTGGTTTCTCAGACCCAGTCTATGCTGAGGCCTATGTCCATGTCAACCAGTATGACATTGTGCTGGACGTGCTGGTCGTCAACCAAACCAACGACACCCTTCAGAATTGCACCCTGGAGCTGGCGACATTGGGTGACCTCAAGCTGGTTGAGAAGCCTTCTCCTCTCACTCTGGCACCCCATGACTTTGCCAACATCAAGGCTAACGTCAAAGTGGCGTCCACAGAGAATGGCATCATATTTGGCAACATAGtgtatGACGTATCAGGAGCTGCCAGCGACAGGAACTGCGTGGTCCTCAGTGACATCCACATTGACATCATGGACTACATCCAGCCAGCCTCGTGCACAGATGCAGAGTTCAGACAGATGTGGGCCGAGTTTGAGTGGGAGAATAAGGTGACAGTGAACACCAACATTGCAGACCTGAACGAGTACCTCCACCACATCCTCAGCTCCACCAACATGAAGTGCCTGACCCCAGAGAAGGCACTTTCTGGCTTCTGTGGCTTCATGGCTGCCAACCTGTATGCCCGCTCCATCTTCGGTGAAGACGCCCTGGCCAACGTCAGCATTGAGAAGCCCATCCACCTGGGTCCTGATGCCCCTGTCAACGGACACATCCGCATCCGGGCCAAGAGCCAGGGTATGGCATTGAGTCTGGGTGACAAGATCAACCTTTCCCAGAAAAAAACATCTGTATAAAGTGAACTGAAAACCAGCAGTCCAACTGAGAACTCCACATTACTGGATAAGATTAATCTGCAAAGAAATGTGCTTTCTGCTCGTCCTCTCTAGTCTCGTCTGTCTCTGGCCATAAAGCGCTACAATATTTTTGATTGCCATTTTGATTAAGTACTGTTCTATGTCTGTATAAGAAATGGTTTTACACCTCCTGTGTCAGGACGAAACTCCCTCTTATTGTCCTCCATGTGATATCCTTGGCCTttctttcattttcaataaacatGACATATATAACAAAACA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030903 notochord development biological_process
GO:0030126 COPI vesicle coat cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K17301 COPB1, SEC26; coatomer subunit beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU615963 lncRNA upstream 8145 73725207 ~ 73725676 (+) True G543978
TU615872 lncRNA upstream 97217 73634966 ~ 73636604 (+) True G543890
TU615803 lncRNA upstream 171228 73562367 ~ 73562593 (+) True G543822
TU615801 lncRNA upstream 185617 73547876 ~ 73548204 (+) True G543820
TU615799 lncRNA upstream 186078 73547201 ~ 73547743 (+) True G543818
TU615987 lncRNA downstream 29553 73771170 ~ 73771497 (+) True G543997
TU616003 lncRNA downstream 116708 73858325 ~ 73891981 (+) True tub
TU616308 lncRNA downstream 194110 73935727 ~ 73935939 (+) True G544292
TU616440 lncRNA downstream 293863 74035480 ~ 74035734 (+) True G544407
TU616456 lncRNA downstream 319248 74060865 ~ 74061122 (+) True G544423
XM_021607597.2 mRNA upstream 1981 73726127 ~ 73731840 (+) True LOC110526547
XM_021607596.2 mRNA upstream 98873 73616828 ~ 73634948 (+) True LOC110526546
XM_036979120.1 mRNA upstream 341572 73251288 ~ 73392249 (+) False LOC100136290
XM_021607601.2 mRNA downstream 3282 73744899 ~ 73789243 (+) False rras2
XM_036980937.1 mRNA downstream 37893 73779510 ~ 73789243 (+) True rras2
XM_021607604.2 mRNA downstream 52018 73793635 ~ 73891778 (+) False tub
XM_036980938.1 mRNA downstream 52018 73793635 ~ 73891778 (+) False tub
XM_021607606.2 mRNA downstream 52020 73793637 ~ 73891778 (+) False tub
TU615384 other upstream 346134 73372805 ~ 73387687 (+) False LOC100136290
TU614905 other upstream 588474 73038621 ~ 73145347 (+) True LOC110526543
TU614766 other upstream 966970 72765681 ~ 72766851 (+) True G542890
TU614654 other upstream 1066949 72665460 ~ 72666872 (+) True saa
TU613870 other upstream 1581427 72151020 ~ 72152394 (+) True G542100
TU616612 other downstream 546161 74287778 ~ 74288138 (+) True G544565
TU617662 other downstream 1496183 75237800 ~ 75238164 (+) True G545485
TU617795 other downstream 1680244 75421861 ~ 75422752 (+) True G545601
TU618729 other downstream 2186611 75928228 ~ 75970674 (+) True G546464
TU619876 other downstream 3145815 76887432 ~ 77036313 (+) False LOC110526968

Expression Profile