RNA id: XM_021607601.2


Basic Information

Item Value
RNA id XM_021607601.2
length 2976
RNA type mRNA
GC content 0.42
exon number 6
gene id rras2
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 73744899 ~ 73789243 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAACTGATTACCGTTTCACATCTTAAAAACGCAGTGGTTAGCAACGCTGTTGAGGGCGTATGGACTCGGTCGGCCGTAGGTCAGTGAGCAGCACTGTTAATTCCTCTAGTCTGGAACAGATTGTAGACGCAGTTATCATTTCAGTCTAATAGGTTCGCGATTTTCCTTCGTTCCATTTTTCAACTGAAGGCCTTTCACTGAAAAGTGGGTGTCTCCTCACTACTGGTGTTCAGAAGGCGGCGAGTGCAGAAGTGTGTCCTCGATGGCAGGGTGGAAGGACGGCTCGGTGCAGGAGAAGTATCGACTGGTTGTGGTTGGAGGTGGTGGTGTCGGAAAGTCAGCCCTAACTATACAATTTATCCAGtcctACTTTGTCACTGACTATGATCCCACGATTGAAGACTCGTATACGAAGCAGTGTGTCATTGACGAGAGGGCGGCCCGGCTTGACATCCTGGACACGGCCGGACAGGAAGAGTTTGGAGCCATGAGAGAACAATACATGAGGACAGGGGAGGGCTTCCTGCTTGTCTTCTCAGTCACTGACAGAGGAAGCTTTGAAGAAATCTACAAATTTCAAAGACAGATCCTCAGAGTCAAAGACCGGGATGAATTTCCCATGATCCTTGTAGGCAATAAAGCAGACCTGGAGCTTCAGAGACAGGTGACCCAGGAGGAGGGCCAGCAGCTGGCCAGACAGCTCAAGGTGACATATATGGAGGCCTCAGCCAAAATCCGTATGAATGTAGACCAGGCTTTCCACGAGCTGGTTAGAGTAATCAGGAAATTCCAGGAACAGGAATGCCCGCCCTCGCCAGAACCCACGCGGAAAGAAAAGGACAAGAGTGGCTGCCATTGTGTGATCGTCTGAGTGGGCCTTATCACTGTCAGTCACCCAGCTGCTGTCACCAGTCCCTGCCTCCTGCCTGACATGACATCTTGTATGGATGACTGAGCGCTGCCTTCTCCACGTGCATGACTTCAACAGAGGTTCCTGTGGTAGCAACCAGGAACTGCCCCCGCCCCCAGACTTCACTTCTAGAAGAAACTGACAACGCCAAATGTTAAACTCCTCTTGACCTACAACAATAATCCAATTCATATGAGAAAGTCCTAACACTAAACATTGCCTCTTAAATCAGCTAAACAATATCATTTTTTGTATTCTGAAGGTCTTTTTCTTGCCTTGCAGTGACATTTGTACTTTTTGCCGAGATTGAatgaggaatatatatatatccagaaTGTCAATGAGAGGTTTACTAGTTACCAGTTTCTCATCAGAATAGAGAGGTGATCTTATGAAGCTCTGTGTATGTCATGCCATATCCGTTTTTACTTCCATGTGCTCATCCGCTACTGTACATAAGTGACATTTGTTGTGATTTTAAAAGCGCATTTGTAATGACTTATTAAATCGCCACAGTACAGCGTGTAAGGTTGATGAGTTTGGTTTGACTTCTATGAACATAACATGTATACAAGTATGTACACTGTACAGTATAAACCTAGATAGCCCTAAAGTTATTATGACAACTTAACTTTCCAGCGTCGTCAGCGGATCCATTTCTATGTCTATGGATTCTGCACTCATCTCACTGGCCAAATATGGAATGTTTACTGTATTTGCATTGTAAGGTTCATAGACTGTAGGCTTCTAATAACATGATATCAaacctgttttatttatttagttgTACAACTCTTCTCTGACtcttacctgttgttgttgactAGCTCAGAGTCAGGTTGGCCTAATCAGAATTAAACATTTTAAACTCTTTATATTTTTAATCTTTGACAAGCAGTGCAGAAGAGACCATGGGTAGTATTTATGTACCTCATTGATAATGATGATGTTAATAGCAGACCAGTTTCAGAAATGTTCCTCTCTGACATATCTTTTCAAATCAATCCCTCTCAGTTGGAACATTGATTTTTGTACCATCTATTTGGCTCTCTTTTGGAACGTAGTTATTACTTAAAGTAGACAGAGGTATTGAGCTGTTGAAGCTCACTCATAAACAAACTGTAACTTAATTTCAATGACGTGGTTGTTTGTTACACACTGCCTTCAATTATTCTTGGAGATGTGTTCATGTCCTCCAAGGTTATTGGTGTGACTCTGGGCCAGTTTGGGAGCTGTTTCCATGACTCCCACAGTCACATGGAGGTTACATCATTGCCATTACATCACCTGACCTCTCACCTTTAAAGTTAACATCAAGACAATTCACACATTCTGTTGTCTTGTCATCCTTTTCAATATGATCTGTATTTCTGCTTAATAGAAACCAATGAACTATTGTAGTGTTGTTATATCATGTAATATAAGACAAAAAGAAACATGAAAGTGATTATTTGTTGGACTTGATTAAATGTTTTTACTTTATACTTTTATACAAAAGTATTTTTATATGTTTGTAAGTGAATATGCTCTCACAGCACAGCTGTGTGTATATGTAAAGAGGAATGTATAATTCCCTTAGCTGGTTTTGAACTGAAGAAgactgtaggcctacattggtTCTTGACCAACCTGTGGTCCAGAACCTTTCCTCCTCTTGATTTGATTAGTTCTCATTTAGACAAATCTTCCAAGAGTTATTGGTGTTGGTGACACATTTTCCTTGACCATTCCCCACTACCTTGCCCAATGCCTATACTGCAAATGTCAACCAATGTGTTGGTTGAACGCCTCCACTCAGCCCACCTGACCTACTAGCAGGGTGGATCGTGGGTAGGCCGTTCACTCTTCTCTTCACTGTTCTCTAGGTCAATGTTTGGGTCACAGATTCATGTGTTCTGCTCAATGGTGGAGTCTGAAAGTACCACCACCTCTCTTTTGGCAAACTTTATGTACAGTACATtcaattcatatatatatatttttttttcacatCCATGCCCCTTGCCCCATGTATAGCTTCTGGTGCTATAATAAAATCTGTCATTCAGTCAACTATAATAGAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU615963 lncRNA upstream 19223 73725207 ~ 73725676 (+) True G543978
TU615872 lncRNA upstream 108295 73634966 ~ 73636604 (+) True G543890
TU615803 lncRNA upstream 182306 73562367 ~ 73562593 (+) True G543822
TU615801 lncRNA upstream 196695 73547876 ~ 73548204 (+) True G543820
TU615799 lncRNA upstream 197156 73547201 ~ 73547743 (+) True G543818
TU616003 lncRNA downstream 69082 73858325 ~ 73891981 (+) True tub
TU616308 lncRNA downstream 146484 73935727 ~ 73935939 (+) True G544292
TU616440 lncRNA downstream 246237 74035480 ~ 74035734 (+) True G544407
TU616456 lncRNA downstream 271622 74060865 ~ 74061122 (+) True G544423
TU616457 lncRNA downstream 273450 74062693 ~ 74063015 (+) True G544424
XM_036980936.1 mRNA upstream 3282 73733797 ~ 73741617 (+) False copb1
XM_021607600.2 mRNA upstream 3282 73733805 ~ 73741617 (+) False copb1
XM_021607599.2 mRNA upstream 3282 73733821 ~ 73741617 (+) True copb1
XM_021607597.2 mRNA upstream 13059 73726127 ~ 73731840 (+) True LOC110526547
XM_021607596.2 mRNA upstream 109951 73616828 ~ 73634948 (+) True LOC110526546
XM_021607604.2 mRNA downstream 4392 73793635 ~ 73891778 (+) False tub
XM_036980938.1 mRNA downstream 4392 73793635 ~ 73891778 (+) False tub
XM_021607606.2 mRNA downstream 4394 73793637 ~ 73891778 (+) False tub
XM_021607605.2 mRNA downstream 55479 73844722 ~ 73891778 (+) False tub
XR_005052431.1 mRNA downstream 519797 74309040 ~ 74309094 (+) True LOC118965098
TU615384 other upstream 357212 73372805 ~ 73387687 (+) False LOC100136290
TU614905 other upstream 599552 73038621 ~ 73145347 (+) True LOC110526543
TU614766 other upstream 978048 72765681 ~ 72766851 (+) True G542890
TU614654 other upstream 1078027 72665460 ~ 72666872 (+) True saa
TU613870 other upstream 1592505 72151020 ~ 72152394 (+) True G542100
TU616612 other downstream 498535 74287778 ~ 74288138 (+) True G544565
TU617662 other downstream 1448557 75237800 ~ 75238164 (+) True G545485
TU617795 other downstream 1632618 75421861 ~ 75422752 (+) True G545601
TU618729 other downstream 2138985 75928228 ~ 75970674 (+) True G546464
TU619876 other downstream 3098189 76887432 ~ 77036313 (+) False LOC110526968

Expression Profile