RNA id: XM_021607604.2


Basic Information

Item Value
RNA id XM_021607604.2
length 4139
RNA type mRNA
GC content 0.45
exon number 12
gene id tub
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 73793635 ~ 73891981 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACATGGCGACATGGCTGCGTGCGCGCAACCACTGGAGCAACCCATGCATTCGTCAAATTATTTTACAAGCTTGTCAATTTGCGCGCACTGATTTTTCCCTTCTCATTCCAAATGGTATAGCCTATAGAAAGTGAGTCTCTGAATCGATGTGCACCACATCTCAACTCTCATTCGTTCGAGGAGTAAATGCGAGAACTGGTGGGAAATATCGGCGTGGCATCTAAACCCAGGTTTTATTTTCGTGTCACGTTGAACCCTATTTAGCAACACCCCATAGAAGTCATGGAAGGAGTCAGCAGCAACAGGAACATGTCATACAGTCGATGGAGTTATGACAGtACCTTGGACGATGAGGGCAGCAACCTCCGCCAACAGAAGCTAGACAGACAGcgaGCTCTCCTAGagcagaagcagaagaagaagagacaggagCCTCTGATGGTGCAGTCCAACGTGGACGGGCGGTCTCGCGCCCGCAGGACCAAGCAGTGTGAGGAGCAGGCTCCCCTGGTAGAGTCTTACCTCAGCAGCAACAGGAGCACCATCTACCACGTGCAAGAAGCTGAACATGAGGAGGTGAAGGTGGTAGCGGACAACCAGGCTCCTCGCTCAGCCAAAAAGGGCAAGGCATCGACCAGCTCCACCCCGCAGACAGGCAGCGgcaagaaggagaggaaggggaagcACAAAGGACTCGATGGGCCGGCGTCCTTCCAGGAAGAGGGCCAGATCCAGATCATGACGGTGGGTCACTGGGccgtggaggaggggagtgagggagatgCTGTGATCAGTGCTCAGCCACAGGGCAAGCAGGACCTGAGGGTCACCATGCTTAAGAAAGGTATTTCTAGTAGTATGAACTTTGACGAAGAGGAGGATGACGAAGATGAAGTCAGTTCCAGTTCCTCTCAGCTCAACAGTAACACACGGCCAGGCTCTGCCACCAGCAAGAAGTCCTGCAAGGAGGCAGCCTCAGCGTCCACCCCTCCCGTCAGTGAGCCGGCCATCGACGTGGATGACCTGGAAGAGTTCACCCTGAGACCAGCCCCTCAGGGGATCACGGTGAAGTGCAGGATCACCAGAGACAAGAAGGGCATGGACCGAGGCATGTACCCTACCTACTACCTCCacctggagagggaggatgggaagAAGGTGTTCCTGTTAGCTggaaggaagagaaagaagagCAAAACATCTAATTACCTCATCTCCATCGATCCCACTGATCTGTCTCGAGGGGGGGAGAGTTTCATCGGGAAGCTGAGGTCCAACCTCATGGGAACCAAGTTTACAGTGTATGACAGTGGACAGAACCCTGGGAAGACCACCTCCAGCCTAGAGGCTACTAACCTGCGGCAGGAGCTGGCAGCTGTCTGCTATGAAACCAATGTTTTAGGGTTCAAAGGACCTCGTAAAATGAGTGTCATCATTCCTGGAATGAACATGGACCATGAGAGAGTCGCCATCTGCCCACGGAATGACCATGAGTCTTTACTGGCGCGGTGGCAGAACAAGAGCACAGAGAGCGTGATCGAGCTTCACAACAAGACCCCCGTGTGGAACGACGACACACAGTCCTACGTTCTCAACTTCCACGGCAGAGTCACTCAGGCCTCAGTCAAGAATTTCCAGATCATCCACGACAATGACCCGGACTACATTGTGATGCAGTTTGGGCGGGTTGCGGAGGATGTATTCACCATGGACTATAACTACCCTATGTGTGCCCTCCAAGCCTTCGCCATTGCTCTCTCCAGCTTTGACAGCAAGCTGGCCTGTGAGTAGCAGCCACCCTCAGTCCTTTCCCTCCTGAGAAGCTACCTGCTCCAAACTGAAGGCCTACTCATGGGCCTCCATTAGTCCATCAGTCCCCTCACCAAGGGCTTCAGTTAATCCCGGGTCATCATGGGGACCCAACACTGTCCAAGAATCCCCCCTGGAATTTGCTTAAGCCGAGGATGGTGTGGAGGCACAAACTGTCTGcaagtgtgtctgtgagtgtgtgtatgtgttctggTGCTCCTTAGGAACCCTTCCAGTCTCTATTCTGGATAAGGATATGTCAATCAGTGGACAGGACAAGCACAAAGACTAATCCACTCTTGCATCTTAAGGCTCATTTTAATAGATcatgttttaaattaaatatgtAACAATGAATCCTGTTACTTTATGTATCCGTTGTGGAATTCTAACATTTATTTCATCATTAATTACTTTTCAATTAATAACAtttattgcaacaacaaaaaaacaaacaactgTTCATCTTCATGTTGAATTGGTTGAAGGAGTTTCATCGTAGTAATTAACCCCCACATGCCATCTTTAACTTGTTCAATATTGGACTGGAAACCATTAGGTTACAAATTAGGAGCCATTCAAGATTGAAAACGTAATTCAAAAGATAAAGCTCCTAACAAATAACACTTTAACTTCATAACTGTCACTAATATTACTCATTTGAACATCACATTCACATCCATGTATGTGTTTATAttgttatttatgtatttatacaTATCCACgacacaggtaactgccaaaataaaggaaacaccaacataaagcgtCTTAATAAGGGGTTGGGTCAccacgagctgccagaacagcttcaaagcACCTTGATATAGATTCTACAAGAATCTGGAACTATactggagggatgcgacaccattcttccacgagaaattccatagtTTTATGTTTTGTTTATGGTGATAGAAgacgctgtctcaggcgccgctccagaatctcccataagggttcaattgggttgagatctggtgactgagagacACACCCTTTTAAAACCCccatgctcctttgagacccctcctTCAGATaaactgagatctcttcttctagccatggtagccaaaataatgggtaaCTGGgcattttatacatgaccctaagaatgatgggatgttaattgcttaattaactgaggaaccacacctgtgtggaagcacctgctttcaatatactttgtatccctaatTTACTCGTGCTTtctttattctggcagttacctgtatgttgttcTTAAGTGTGTCTATATCCTTAGTTTACACTCATTGAATCTTTGTTTTTGAGCTTGAAGCACACAACTTGATTGAAGGGAATATCTGTCATACCGACACATAGGATAAAAACAGATAGTTAATCAATTGGACATGAACAGACCAGGTCAAATCAAGGGCATGACACACAGTCTGTGCATCTTGTAAAACATCATATCACACGATCAAGTATGAGAATGTATAGGATGGTGCACTTTAACGACGTTTACAGTGTATGTGAAGTAGCTGTACATATTGTGcctttggagaaaaaaaatctaattttatgcTTTATCAGATGTTCTTCTCTTTCTGGGACGGGACTTTGTAATGCACCTGACCTGTCTGAGCCTGGGTTTCTGCCTgcttcctctcccaccctctacTAGAAAAACACTTATTGAGGTGACGGGATTTGGTCCCTTTTCTATTTGGTTATATCTGATTGTAATTTTCAGATGATGAAGTCACTAAAGTTAGGGTGTTTTTAAATGCCCCTACTGTAAATTCTCAACTCCCTGAATAAAATATGATTTACTAATTTGTCCCCAGGAATCTTAATAAATTATATTCAGTAATATAATGTACAGAATCTTGTATTGGCACAAGACCATGGGCATTTTGATTAGCAGATGCACTCATATCTTCATCTGACATTATCAGATGAAGGTTATCAGTTCATACGTTATCAGAGACCAAACCCCTCAGATATGGCAAGGATAGTAGCAGGCCTGTGTGTATTAACACACATACTAATCTCTCATGTTATCCTATATTGAGTTTTGTTCTCCATATTTTTAGTTATTCAATTATCTTAAGtcacttctttaaaaaaaatttttttagggggactttattgaacagagaggatgacagtggggaaagaaAGAGGTTGTGTCAAAGGGCAGTAGGCTGGATTCAAACCTATGCTGATAATGTAGAAATGTGCTGGAGGCTGCAACATTACCATTAGACCTGGCCACTCTCCACATTTTTTGAGGCAAAAACATTTCACAAAATATATGAAACTATTTTATATTTTATGGATATTAACTGTAAAATGAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU615987 lncRNA upstream 22138 73771170 ~ 73771497 (+) True G543997
TU615963 lncRNA upstream 67959 73725207 ~ 73725676 (+) True G543978
TU615872 lncRNA upstream 157031 73634966 ~ 73636604 (+) True G543890
TU615803 lncRNA upstream 231042 73562367 ~ 73562593 (+) True G543822
TU615801 lncRNA upstream 245431 73547876 ~ 73548204 (+) True G543820
TU616308 lncRNA downstream 43949 73935727 ~ 73935939 (+) True G544292
TU616440 lncRNA downstream 143702 74035480 ~ 74035734 (+) True G544407
TU616456 lncRNA downstream 169087 74060865 ~ 74061122 (+) True G544423
TU616457 lncRNA downstream 170915 74062693 ~ 74063015 (+) True G544424
TU616460 lncRNA downstream 179883 74071661 ~ 74071882 (+) True G544427
XM_021607601.2 mRNA upstream 4392 73744899 ~ 73789243 (+) False rras2
XM_036980937.1 mRNA upstream 4392 73779510 ~ 73789243 (+) True rras2
XM_036980936.1 mRNA upstream 52018 73733797 ~ 73741617 (+) False copb1
XM_021607600.2 mRNA upstream 52018 73733805 ~ 73741617 (+) False copb1
XM_021607599.2 mRNA upstream 52018 73733821 ~ 73741617 (+) True copb1
XR_005052431.1 mRNA downstream 417262 74309040 ~ 74309094 (+) True LOC118965098
XR_005052432.1 mRNA downstream 419563 74311341 ~ 74311395 (+) True LOC118965099
XR_005052433.1 mRNA downstream 421858 74313636 ~ 74313690 (+) True LOC118965100
XR_005052434.1 mRNA downstream 424123 74315901 ~ 74315955 (+) True LOC118965101
XR_005052435.1 mRNA downstream 426423 74318201 ~ 74318255 (+) True LOC118965102
TU615384 other upstream 405948 73372805 ~ 73387687 (+) False LOC100136290
TU614905 other upstream 648288 73038621 ~ 73145347 (+) True LOC110526543
TU614766 other upstream 1026784 72765681 ~ 72766851 (+) True G542890
TU614654 other upstream 1126763 72665460 ~ 72666872 (+) True saa
TU613870 other upstream 1641241 72151020 ~ 72152394 (+) True G542100
TU616612 other downstream 396000 74287778 ~ 74288138 (+) True G544565
TU617662 other downstream 1346022 75237800 ~ 75238164 (+) True G545485
TU617795 other downstream 1530083 75421861 ~ 75422752 (+) True G545601
TU618729 other downstream 2036450 75928228 ~ 75970674 (+) True G546464
TU619876 other downstream 2995654 76887432 ~ 77036313 (+) False LOC110526968

Expression Profile