RNA id: XR_005052435.1


Basic Information

Item Value
RNA id XR_005052435.1
length 55
RNA type mRNA
GC content 0.42
exon number 1
gene id LOC118965102
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 74318201 ~ 74318255 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAAATTTGCTCTTTTAGTATTTGTCTAGTAGGTTTCCTCAGACAGGAAGCCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU616630 lncRNA upstream 1344 74314342 ~ 74316857 (+) True G544580
TU616565 lncRNA upstream 18683 74298879 ~ 74299518 (+) True G544521
TU616618 lncRNA upstream 22349 74295358 ~ 74295852 (+) False G544571
TU616619 lncRNA upstream 22587 74295358 ~ 74295614 (+) True G544571
TU616616 lncRNA upstream 24944 74292947 ~ 74293257 (+) True G544569
TU616636 lncRNA downstream 6655 74324910 ~ 74325244 (+) True G544586
TU616643 lncRNA downstream 15347 74333602 ~ 74333932 (+) False G544591
TU616641 lncRNA downstream 15393 74333648 ~ 74333892 (+) False G544591
TU616642 lncRNA downstream 15393 74333648 ~ 74333932 (+) True G544591
TU616838 lncRNA downstream 147569 74465824 ~ 74466025 (+) True G544754
XR_005052434.1 mRNA upstream 2246 74315901 ~ 74315955 (+) True LOC118965101
XR_005052433.1 mRNA upstream 4511 74313636 ~ 74313690 (+) True LOC118965100
XR_005052432.1 mRNA upstream 6806 74311341 ~ 74311395 (+) True LOC118965099
XR_005052431.1 mRNA upstream 9107 74309040 ~ 74309094 (+) True LOC118965098
XM_021607606.2 mRNA upstream 426423 73793637 ~ 73891778 (+) False tub
XR_005052436.1 mRNA downstream 1829 74320084 ~ 74320138 (+) True LOC118965103
XM_021607636.2 mRNA downstream 27079 74345334 ~ 74362749 (+) True ipo7
XR_005052445.1 mRNA downstream 37174 74355429 ~ 74355606 (+) True LOC118965113
XR_005052442.1 mRNA downstream 42281 74360536 ~ 74360679 (+) True LOC118965110
XM_021607639.2 mRNA downstream 44860 74363115 ~ 74378018 (+) False LOC110526565
TU616612 other upstream 30063 74287778 ~ 74288138 (+) True G544565
TU615384 other upstream 930514 73372805 ~ 73387687 (+) False LOC100136290
TU614905 other upstream 1172854 73038621 ~ 73145347 (+) True LOC110526543
TU614766 other upstream 1551350 72765681 ~ 72766851 (+) True G542890
TU614654 other upstream 1651329 72665460 ~ 72666872 (+) True saa
TU617662 other downstream 919545 75237800 ~ 75238164 (+) True G545485
TU617795 other downstream 1103606 75421861 ~ 75422752 (+) True G545601
TU618729 other downstream 1609973 75928228 ~ 75970674 (+) True G546464
TU619876 other downstream 2569177 76887432 ~ 77036313 (+) False LOC110526968
TU620306 other downstream 2959737 77277992 ~ 77279354 (+) True G547884