RNA id: XM_036980961.1


Basic Information

Item Value
RNA id XM_036980961.1
length 4571
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC110526571
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 74509447 ~ 74536436 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGGAAAGCGAAGGAAGTGACGTTGTGACCAGGAAACAACACAGATTCTTCGAGTTCAGAAAGTGTTGTTAGCAAACTCGCAAATTCATCAcaaaaaactatcatacacaaaAACAAGATCCAGAGAGAATGGCTGCAGACTGGTTGGGTAGTCTGGTGTCAATAAACTGTGGACCAACCCTGGGCATGTACCAGGGAGAAGTGTCATCTGTGGACCAGACTAGTCAGACCATCTCTCTCAGACAACCTTTCCACAATGGGGTCAGATGCCCTGTCCCTGAGGTCACCTTCAGTGCTATGGACATCAAAGAGCTCAAGTTCCTGGATATCCAAACTCAAAGTGGTGTCAGCAGAGCCAGTGCTGGACAGGGGGTCTTGTCTGATCCAGTTGTCAAATCTTCAGGGCAGAGTGGTCAGAATAGCAGAGGTGGTTACCCTGCCAACAACACCCATTCCACCACCGCTCCTATTACCATTTTACGCAAAGGTCCTCCATCATCATCTAGTAACCGAGGGCCAAACCAGGCCACGCCGAAGAAGAATGGAGTGAAGaacggaggaggtggagggcagATGAGGCTCAGGGACGACGAGTGTTTTGGTGCTGACATGGATGAGGGTCTGGACACAGACTTTGACTTTGAGGCAAACCTGGCACTGTTCGACAAGGCAGCCGTGTTCTCGCAGATTGACGGCACAGATTGCAATGGGGCACGTTCCCGTGGTACGCCCGGTGGCGAACGTGGTACACCCACACGTTACCGTCACGATGAGAACATCCTGGAGGTCAAACCAGTCGTCTACCGGCAGATCACGGTCCCACAGCACGGGGGCAAAGAGTACTGCACTgACTCTGGCCTGGTTGTCCCCAGTGTGTCCTACGAGCTTCACAAGTGTCTTCTGGCCTCAGCGGAGCGGCATGGCCTGTCTTTGGAGCGGAGGCTGGAGATGACTGGTGTGTGTGCCAGCCAGATGGCCCTCACTCTACTGGGGGGCCCCAACCGGCTGACACCTAAGAATAATCACCAGCGTCCCACGGTGGCCCTGCTGTGTGGCCCCCATGTCCAGGGGGCCCAGGGCATCAGCTGTGGACGCCACCTGGCCAACCACGAGGTGGAGGTCATCCTCTTCCTTCCCAACTTCGTCAAGATGCAGGAGTCCATTACCAACGAGCTCGCCCTCTACAGCAAGACCAGCGGCAAGCAGGTGGCCAGCATCAAAGacctgcCAGTCAGCCCAGTGGACCTGGTCATCAACTGTCTGGACTGCCATGAGAATGGCTTCCTGAGGGACAAGACCTGGTACCTGGCGGCTGCGGACTGGGCCAACCAGAACAGGGCTCCGGTGCTCAGCATTGACCCTCCAGTGAGTGGCAAGAAGCAGGCCGTGGAGGCCAAGTGGACCCTGTCTTTGGGCCTGCCCCTGCCTCTGGATGGTGGGGAGGCTAGGGTCTACCTGTGTGACATCGGGGTGCCGAAGCAGGTGTTCCAGGAAGTGGGCATCAACTACCATTCACCCTTCGGCTGCAAATTCGTTATTCCTTTACACTCTACATAGCAGGACCTGCCACAACCTACCAGCCCTGGCTGTGCACAGGTTTGTGTTGTCATTCTAGTGAAATACAGAAGGCCTTCTTAGAGGGTGATGTGTACAGTTACTGAAAAAAGGTTGTGGGGGGATTTCAGAATTGGCACTTAATTGTATTGCTGGTTGGTATATGTTTTTCCTTTGCTCCCGGTTGACCCCTGGGAGTGTATTGCGTGCCACGGGAGAAGGGTAAAGCTCCAAGAGGAGGGCTTCCTGTCCCGTTGGGCTTTGTGATAAGGGCTATGTGTGTGCATTGCCCTCTATCAGCCAGTCTTGAGTATGTTATGTTTACAGAGAGCTGACTAAGAGACTGACTCATAGTGGTATCTATGAACCCTGACCGTGTGACCAGCCCTGGGCCTGAGACATACTTCCTGTTTCCTACTGTAGATTGTGTGGACTGGAGACCACAGGACCTGGCTGACCCAGTGCCCCACAGCAGAGCTCAATTTCTCTCGCCTCTCTGGGAAAAGCCCTATGATCTGAATTGGAGATATTTATTTGAAATGCCCTTATTCTCACTAAATTCAATTGGTGTGTTTTTCTTAAATGCCACTTTTTGGTCAACATTGGTTGTAGCGAATTTCAATTGAAATCTGTATTTAGCTAGCACTGGTATCAACTCGGAACAAACACATTTGTTTGTCCTCTTTTCTCTATCTAAAAAGAAAATGTTTAAGAATTTGTCTGTTTTTGATAAATAGGGAAGATGTTTTGGATTTGTTTGAATGCATTTATTTTCTAAAGCTGCATCTGGGCTATATTTCTAACAACACTGCAATGAAAGATGTAAAGTGGTGCTCAACACTTTTGTTTCAGTGTATTTGTGTTACCACACAAACATAGTTTCTCTGTCTTTTACACTTCTCATATGAAATCATATCTGTTTGACACCTGTCAGATAAGGCCACATACAGTCTTATAATAGTTTACAAGGGTATGCATATGTATCTGTTAAGGAGCTATACACAGTAGAAAGGTACACAGGCTCTACCTTTGCTGCCGTGACTGTGTTCTTGCTTCAGGTTTTGTAAACATGTCATTTGCCAAGCAGTACCATTTAGTTTACACTGAGTATTACAGCATTTgtcaagaaaaaaaaatgtaaagatagTTTTCCTAGTAGTAGCCATTGTACCATTTAATTCACTTTCTGATAGGATTGGGTTTGTATTTCATTTGTATAGGCAATATGCCATTTAAATTCCGAACACAAGCCTTGGATGTGCAGCTAAACAGATGGGCCGCGGTAGATAAGACTCGGATattatttttttgcaaacattttgaaAGTGGATCTTCAAATGCGCTTGAGCCAGACTCGGATTTGTGTGAGACGTTCTGTGGTTGTGTAAACAGATCTGTAATTACAGACCTGTTAGGTCACATACTGGCCAGGATGTCTGAATTATGTTTGCAAACGGTTAGCGATTTTTGCAAACACTCGGTGCATTTTAGTATGGTCTTAGTATGGAGTGCAGACATTGTGTTTTAGGGAGCTTTTGTGAATGAGTTAGATTTAGGTTTGGCTCCAAGGGTAATGAGGCTGACTGCTTTCTTAAACtgtatttcattatttttttattattctaAATCCAATTATTGGTGTGTTTGCACATGTTTATTTTCATGGGTAGTCGATGAGGATTGATCTGAATTGTTTGGGTTACAACTTTGCAACTTTTATGACTTGGAAGTACTGTCTTGTCTGTAgtgcatacagtacatgtaatACAGTGAATCAATGGCATCTGTTGCCAATTGTGTTCTAGTTGGTAGGACTAtgagtttatatttttttgtttatctCTGATAATGTTGCTCAATAATGCTGTGTTGCTCAACAATGTCACGCAATGAGCTTTCTCACGTATTACAAGTGTATGTAGCCTGTTTTTGTAAATGTATGCCATCTCACTGCAGGTGCCAACTACAGATACTGCAGGTATCTACATAACATGTTATGATGTGAGAATAGAACAACACAATGTATCTTTATAAAGCATCCAAAACACGTATTTTAGCTTAGTAGTTGGGCTCCTTGAGGCTGCTGCTGTTGTCAGCTTTGAGAGGAATGCCTGTTCATGCATGTGATGCCAGAGACCTAAGGATGCTGAGGTGAGAAGTCTTACAGGAGATTTTTTTTGTCATCTAAAAGTGCTACTTTCAGAAATATTTCCCTGGGAAATGATGATCTTGTATTGTGACATTCCAGCCCAGACATATTTATTTTTAAGTGATTTATGGTCATATTGTTACAAAACATTTGCCAGAAAACAGGCCATGTTTTCGCACAGCTAATTAGTAATTTTCTTAAGGACTTACAGTAATAGTTTTGGGGAAGTGTCCTCGTGGTAGCTAGCAATGGGATAGTGGCTAATCTCATATGTCATGATAGAGGAACTAAACCACTTTTGTTTGATCATATCATTACAGATTTAATCAGGATTTTGTTTTTTTAGGAATTGGTGTGTAAACTGGAATAATAAACGTTATCCTTTATCATAAAGGAATTTCAGCAAGGCAGATGAAGCATGTGACACCACAAGTACTTTGACAGTTGACACTGTTCTGTATACTGAGATCAAGCTTGAGAATTAATGACTGATAAACATTAAATGTGACACTGCATAGAAAATATTCAATTTTTTAAAGGGCTTCATTTTTTCAACACTTCCATTTCAATTTCTGTTGACCTGTTGTTGTAATAAAGACCACTTCATCCATTTTTTTATATAGAAAATACAAGGGGGCAAAATGTGCCACATGCACTACTTTTGTAGGAATCTTGAAAGCACACTTATTTGTTATGCCTATCCCACAGACCACAGCTACaattttgttttgggggggggacgTTTGTTACAAGATCATGCGTGGGAATGTGTATAGTAATTGTTAAAGTTCTCCAAGTCACACTTCTATGAAGCTGCAGCAAATGTATAGTGTTTTAGTTTATTAAATGGACATGTGGCTACTCTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU616821 lncRNA upstream 10351 74496090 ~ 74499096 (+) True G544739
TU616850 lncRNA upstream 16864 74492278 ~ 74492583 (+) True G544766
TU616845 lncRNA upstream 29035 74480158 ~ 74480412 (+) True G544761
TU616842 lncRNA upstream 38989 74469982 ~ 74470458 (+) True G544758
TU616841 lncRNA upstream 40639 74468264 ~ 74468808 (+) True G544757
TU616907 lncRNA downstream 58358 74594794 ~ 74595064 (+) True G544817
TU616923 lncRNA downstream 75655 74612091 ~ 74612578 (+) True G544828
TU616925 lncRNA downstream 78098 74614534 ~ 74614920 (+) True G544829
TU616926 lncRNA downstream 78695 74615131 ~ 74615703 (+) True G544830
TU616927 lncRNA downstream 79386 74615822 ~ 74616032 (+) True G544831
XM_021607648.2 mRNA upstream 415 74505044 ~ 74509032 (+) True LOC110526570
XM_036980960.1 mRNA upstream 45633 74443137 ~ 74463814 (+) False LOC110526569
XM_021607647.2 mRNA upstream 45633 74443140 ~ 74463814 (+) True LOC110526569
XM_021607646.2 mRNA upstream 78770 74395368 ~ 74430677 (+) True LOC110526568
XM_021607643.2 mRNA upstream 114410 74389783 ~ 74395037 (+) False LOC110526567
XM_021607650.2 mRNA downstream 509 74536945 ~ 74580991 (+) False LOC110526572
XM_021607651.2 mRNA downstream 975 74537411 ~ 74580991 (+) True LOC110526572
XM_036980963.1 mRNA downstream 65078 74601514 ~ 74607809 (+) True LOC110515568
XM_021607653.2 mRNA downstream 72955 74609391 ~ 74612035 (+) True LOC110526573
XM_021607658.2 mRNA downstream 94583 74631019 ~ 74656748 (+) False LOC110526575
TU616612 other upstream 221309 74287778 ~ 74288138 (+) True G544565
TU615384 other upstream 1121760 73372805 ~ 73387687 (+) False LOC100136290
TU614905 other upstream 1364100 73038621 ~ 73145347 (+) True LOC110526543
TU614766 other upstream 1742596 72765681 ~ 72766851 (+) True G542890
TU614654 other upstream 1842575 72665460 ~ 72666872 (+) True saa
TU617662 other downstream 701364 75237800 ~ 75238164 (+) True G545485
TU617795 other downstream 885425 75421861 ~ 75422752 (+) True G545601
TU618729 other downstream 1391792 75928228 ~ 75970674 (+) True G546464
TU619876 other downstream 2350996 76887432 ~ 77036313 (+) False LOC110526968
TU620306 other downstream 2741556 77277992 ~ 77279354 (+) True G547884

Expression Profile