RNA id: XM_036980966.1


Basic Information

Item Value
RNA id XM_036980966.1
length 3973
RNA type mRNA
GC content 0.51
exon number 18
gene id LOC110526577
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 74672184 ~ 74732529 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTCCATAGAAACGATGGGCGTTGCCAGCGAAGTTAGTGCTGTGTCAGTGACATGATGAGCCATTTTTACATTGTAGCATCAGTTCAcaacaatacattttaaaataattagCATTGACGTTAAACAACAAAACTGGTTAGTTAGCCACATTCTAGCAAGCTGACTAGCAACGTTGTAACACTAGCAAAAATGCGGCCACAAAGACAGCAGACCAACAACAATACAGCCATTACAGGAAGGTGTCTTTCTCCCACGCTGGACGTCCGATGGTCTAAAGACTTTACAAACGGGATAAACATGGACACCATGAAAATGAATCCACCAAGACAAGACAGCAGGCTTAATGCAGACAGTGGTGGCGGCAGGCCTCTCCACACCCCTGTGCTGGCGTTTGTCAGTGAGTTTATGGGCCCTGAGCGTCCCCTCCTACCCCCTGCTGCTGCTCTACCCAGTGGGCTGACTGGTGACCTGGGGCCACAGCCACACAGAGTGAAGCCTAGGAGAGCAACCCACAGTGCAGGGGCCATCAACTCCCACAGTACCTCACCCCTCACCCTGCCAACTGGACCAGGTGATGCCATATCATTGAGTGAGAATTCTTCCTCTAGTTTTCCAATTGCCTTTCGTTCCCGTGATGACTGTGCTTTGAGTCCTGAGCGACTAGATTTGGACAGGCGTGGTCTGGAGGAGTGTCCCCTGCTGGAGGGCATGGGTAGGCTGCGGCTGCTTAACTTTCAGCACAACCTCATCACGCACATCCACAATCTGTCTCATCTGCGGCACCTGGCCTTCCTAGACCTGTATGACAACCACATCTCCCAGATGTCTGGCATCTCAGCCCTGGCCTCTCTCAGAGTGCTTATGCTGGGCAAGAACAGAATCCAGAGGATATGCAGTCTGGATAACCTGACTAAACTAGATGTTCTGGACTTGCATGGCAATCAGATCTCCCAGATAGAGAACCTTTCCCACCTGTCTGAGCTGCGCGTGTTGAACCTGGCAGGGAACTGCATCTCCAGGGTGGACAACCTGCAGGGCCTGGACTCACTGACCGAGATCAACCTGAGACGCAACTGCATCTCCACtgtgACAGAGGTGGACCAGCTGCCCTGCCTCCAGCGCCTCTTTCTCAGCTGCAACAGCATCACCAGtttTGATGAGCTAGCCTGCCTGGGAGAGTCGTGCTCCCTTTATGAGCTCACCCTGGATGGGAACCCAGTAGCCCTGGAGACATGGTACAAGCAGGCCGCCTTGCGCTGTGTGCTTCAACTCAGACAGCTGGACATGAAACGTGTCACGgaggaggagagacgtaTGGCCTGCGTCACGGCCCGGAAGGAGgatgagaagaagagggagagtcACAAGCAGGCCATGCACAAGAGTCCTGCTCATGTTGTGCCTCAGCAGTTCTACACTCAACTTGGGCTCAAGTCTCAGGACTCCTCAGTGACAAGCAAGgagaaGCGGCGTCTGGCCATCCGTAATGCAGCACTGCAGTGGGAGGGGGTCAGGGCCTGCCTGGAGCTTCCGGCTCAGAACGGAGCCAAGGAAGAAATCAGCCCTGAGGCAAGCCCCGCCCACAGCCCAGCCCAGACCAATGGCCTTGCACTGGAACCTTCTCCGGATGAGCAGCTCAGACGGGTGAGTCCAGTGTCGGCTCTGGACAGGCCAACAGGGGGCAGTGAGACCCGGATGCGCTCCACCAGTCGCCCCAACAGTCCTCGAGACCCCAAGCTCCTGGAGGCAGGGGGTGTCAACCTGCAGAGCCTCTCCCTGTCAGACAGCCACCTGGCGGAGTTGGATGGGGAAACCCTGCGCCTGTTCGGCCTCGGAGCACTGGAGGCCctggagagaggctggggggtCCAGACTGCAGGGGCCGTCACTGTCATAGCCTTCCGCTACATCCACTTTGATGCGATCGTGCCAACACTGCCACGCATAAGGGTCAAGTTCCCCAACCTATCTCATCTGATTTTCCTGGAGACCAACGTCAGCCGTCTTCCTCAGCTGGCTGCTCTGGCCCAGGTGAGACGTCTGGACCAGCTGACCATCCACCCAGAGGGGAACCCTGTAGTCAGCCTTTCCCTGTGGAGATCCTTCCTCATCTACCGCCTGCACCACTTCAACCTGCATAAGATCAACAACCTGGAGgtGACCATGAATGACATGATCTCTGCAGAGCGTCTGTTTGGGACGCTGGGTCATATCGCTGCCACCGAGACACCACGCTGCCGCCTGCTAGTACTGCTGGAGGAGTCCAGgaaGCGTCAGCTACAGTTTCTGTTGGAGGGGCGTGGGCGCCGTGCAGGCTTGAGCCCAGAGGAGCTGCGTGACAACGGCAAGCTGCTGGGAGAGGGCCTGAGCAGAGCCCTGTTCAACTACCCCAGTAGAGACTGCTGCAATGTGGGAGCGGAGAGCCCAGAGGAGGGTGCTATGGAGTCGTCATCGGAGTGCGGAGCCGTGATGGAGCAGTACATACAGGCTCAGGTCCAGAGGGCATCTGACACCAACCTGAAGAGGGAGTCCCTCTACAAACTGTGGCCCGCCATGTTCATGGAGATGGTGAGAGACTGTGTGCTGGAGATGAGGGACCGACCGGCCTTCCGTCAGGCCTGCCTCAACAGGCTCTCCACACAGGGAAAGTGACAGGGTGAGGGGTGAGACCGAGGGTGAGACCTACAGTACAGCAAACTGGACACATACTGGAAACAGGTACAGCATACTGGACACATACTAGAGACAGGTACAGCATACTGGACATATACTGGAAACAGGTTGAGCATACTGGACACATACTAGAAACAGGTACAGCATACTGGACACATACTAGAAACAGGTACAGCATACTGGACACACTAGAAACAGGTACAGCATACTGGACACATACTAGAAACAGGTACAGCAAAATGGACACATACTAGAAACAGGTACAGCATACTGGACACACTAGAAACAGGTACAGCATACTGGACATATACTGGAAACAGGTGCAGCATACTGGACACATGTACAGCATACTGAACACACTAGAAAGAGGTACagcatactgtacacatacataCTGGAAAGAGGATACGGGACAGCTactggaaacaggtacaacataCTGGACCTACTGGAAACAGGTATAGCATACTGGACCACTTCTTCTACTACAGCATATTGGACACTCTCATGCTGCTCTGTCTCACCACATTAACTCGTCTTCATCATCACGTGGTGTCAGACAGTCAAGTTTTGGGGAATTTTGGAGTTAGATTCTTTTCATAACTGGAAAAACGTATTCAGATCGAAGATGGATGTGAATTTTTCTTTTAAAGGCAATTTTGGGGGGGTTCTCACCAACTGGGCCTCTAAAGCTTGAATTCACATTATCATGGAAAAGACAATATTGATGATTGTTCTATACTCTGTTTTTCCTATTCAACTTGATTCCAGGATGCACAGAGCCAAAGAGCTATAAACTTGAGAAAGTCATTGTGAGCGTGCATTGTCATCTCTAAAGAGGAACACTCTTTGCACTTTAAAGCCTTCATAAAGACCCTGTTCACGATCTCCAGCTGAAGATTACAATGAGTGTGTCTCATTGAGCCTAGAATGATTGTGTCATGATAATCCTCTTCTTaatgttactctctctctctctgcctggcgTGATGACAAGGGCACAAAATACATGTTTTCTTTTCGGACCACTCATTTTCTGTATTGTACTTAGAAATAAAATATTCCCTAACACTTAACTGTTCCATGTTTATTGCTCACTTAGTGTCTCTGTTGATCAAGAAACCATGCTGCAGGAAATGTATTCTCCATCCATCAATCATCAAATTACTCAGAGCTAATATTTTGACTGAATCAGACGATTTTGCACAACAACATATCATCaaaagttgtttttttgttttgttatattTATCTCTTCTGACCATTAAACCCTAAGTatgttatactatactatacta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU616952 lncRNA upstream 721 74672260 ~ 74675468 (+) True LOC110526577
TU616895 lncRNA upstream 37001 74616543 ~ 74639188 (+) True G544805
TU616894 lncRNA upstream 58546 74616477 ~ 74617643 (+) False G544805
TU616928 lncRNA upstream 59922 74616061 ~ 74616267 (+) True G544832
TU616927 lncRNA upstream 60157 74615822 ~ 74616032 (+) True G544831
TU617261 lncRNA downstream 5536 74738065 ~ 74738310 (+) True G545117
TU617522 lncRNA downstream 260083 74992612 ~ 74993103 (+) True G545363
TU617629 lncRNA downstream 457190 75189719 ~ 75190182 (+) True G545457
TU617632 lncRNA downstream 465777 75198306 ~ 75198529 (+) True G545460
TU617635 lncRNA downstream 467182 75199711 ~ 75200075 (+) False G545462
XM_021607660.2 mRNA upstream 12400 74656888 ~ 74663789 (+) True LOC110526576
XM_021607658.2 mRNA upstream 19441 74631019 ~ 74656748 (+) False LOC110526575
XM_021607659.2 mRNA upstream 19441 74631019 ~ 74656748 (+) True LOC110526575
XM_021607653.2 mRNA upstream 64154 74609391 ~ 74612035 (+) True LOC110526573
XM_036980963.1 mRNA upstream 68380 74601514 ~ 74607809 (+) True LOC110515568
XM_021607670.2 mRNA downstream 44750 74777279 ~ 74795369 (+) True LOC110526579
XM_036981783.1 mRNA downstream 170411 74902940 ~ 74903683 (+) True LOC118965044
XM_021607672.2 mRNA downstream 189867 74922396 ~ 75155528 (+) True LOC110526582
XM_036980973.1 mRNA downstream 436039 75168568 ~ 75194690 (+) False LOC110526583
XM_021607678.2 mRNA downstream 436040 75168569 ~ 75194690 (+) False LOC110526583
TU616612 other upstream 388051 74287778 ~ 74288138 (+) True G544565
TU615384 other upstream 1288502 73372805 ~ 73387687 (+) False LOC100136290
TU614905 other upstream 1530842 73038621 ~ 73145347 (+) True LOC110526543
TU614766 other upstream 1909338 72765681 ~ 72766851 (+) True G542890
TU614654 other upstream 2009317 72665460 ~ 72666872 (+) True saa
TU617662 other downstream 505271 75237800 ~ 75238164 (+) True G545485
TU617795 other downstream 689332 75421861 ~ 75422752 (+) True G545601
TU618729 other downstream 1195699 75928228 ~ 75970674 (+) True G546464
TU619876 other downstream 2154903 76887432 ~ 77036313 (+) False LOC110526968
TU620306 other downstream 2545463 77277992 ~ 77279354 (+) True G547884

Expression Profile