RNA id: XM_021607670.2


Basic Information

Item Value
RNA id XM_021607670.2
length 3400
RNA type mRNA
GC content 0.51
exon number 12
gene id LOC110526579
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 74777279 ~ 74795369 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTTCCTCTTAAATGCCCCAGCCTCCCCAGCTGCGCCTCCTCCAGCTCAGTTTACAAGGCTGTGCATACAGATCAGCAGAGTAGTGGTTTTGGCGTTCACTGCACTACAGGGTCAAGGCGAAACAGCCAGGAGCAGCTACCGTTTTCTACTGGACCTGTCTGAATGCATGACTGAGAGCTGCTGGTCAATAGTTCTTGGCCACATGAGAGAATGCTATCAGGTCTGGCTCTTCTGCTGCTTGTCTGCCTCCTCCACATGTTGGTGACTGCCAAGGGGAACCCGTGGTCACAGAGTCTGGGCTGCGATGAGTACTTGGGCTCAGGCAAGGTGATGGACAAGTGTGGGGTGTGTGGCGGGGACAACACGGCCTGTAAGCTGGTGTCAGGGCTCTTCCAGCAGCACAGCCTGAACAAGGTGGGCTACCACAAGATAGTGGAGATCCCAGAGGGAGCCACCAAGATCAACGTCACCGAGACGGTGAAGAGCAGGAATTACCTGGCTCTGAAAAGCCGCTCAGGTCGCTCCATCATCAATGGGAACTGGGCCATTGACCGGCCAGGGAAGTATGAGGGGGTGGGCACCATGTTCACCTACCGACGACCCAATGAGGTCACCAGCACCGCCGGGGAGTCCTTCCTGGCTGAAGGGCCAACCAATGAGATCCTGGATGTTTATGTGATCTACCAGCAGCCCAACCCAGGAGTGAGCTATGAATTCATCCTTCCCTCTGACAACCCTCCACAGCACCCCAACCACAGACCTGGAGGGAATACTCTGCATGGGCAAAGTGGGATTGACCACCGGGGCAACCCCAACCAGGAGGGGTACGATCCAGCAGGAGGGGGCAAATACCCTCCCCAGGTACCCAACAACCAGGTGCCAGCGGTCCAGCCACCCAAACGTCAGAGAGAATACAACTGGAAACTGTCTGGGGCAACAGAGTGTAGCGCCTCCTGTGGCAGAGGTAGCAGGTACACCATCTTCCGCTGTGTCCACAGACTGAGCCATGAGCAGGTACCAGGGAACCAGTGTGACAGCAGCACCAGGCCCAGTTCACAGGAGGAGCCCTGCAACCTTcagtcctgccctgccttTTGGGACATTGGTGAGTGGTCGGAGTGCAGTAAGACATGTGGCCTGGGTATGCAGCACCGCCAGGTCTTGTGCAGGCAGGTGTATGCCAACCGGACCCTTAACGTCCACACCAGCCGCTGCCGCCACCTGGAGCAGCCCGAGACCACCAGCACCTGCCAGCTGAAAATCTGCAGCGAGTGGCAGATACGAACCGAGTGGAGCGCCTGCTCTGTTCCCTGTGGCGTGGGCCAGAGGACCAGGGAGGTGCACTGTGTCAGCAACATGGGAGACTTTGTGTCAAACGAGGAGTGCAACATGAAGCTGCGACCCAGTGACAATGAGAACTGTGACATGGGGCCCTGTGCTAAAAGTTGGTTCTTCACTGATTGGGGGAATAAGTGTTCTGCTGAGTGTGGGATGGGCATCCGGACCCGTGGCGTTCTGTGCCTGACCAATCACATTAGCAGCTTGCCTCTGGAAGGGTGTGGCCATGAGCGCCCCACTGACTCTCAGGTCTGTAATCACGGCCCCTGTGAGAGTCGCATCGAGTGGTTTACAGCCCCCTGGAGTCAGTGTTCAACGGAGTGTGGCTCGGGCAGCCAGCAGAGGGCAGTGGTGTGTCTGATGAAGTCAGACGAGGGGTTCAATGTAATGCCGCCCTACGAATGTTCTTCTCTAGACAAGCCTCTTAATCAGCAGAGTTGCCACCTCAAGCCCTGTGGGGCCATGTGGTACCACACAGACTGGAGCGCTTGTTCTAAGACGTGTGAGGGGGGCTTCCGTGTGAGGGAGGTGCGCTGTCTGTCTGATGACATGCTTTCCAGTGAGGGCTGTGAAGAGGAGCTGAaaccagtggagagagaggagtgcaacCCAGAGCCCTGCGTCCCACACATAGACGAGAACTGTCGAGACAAGTATTTCAACTGCAATGTGGTGGTCCAGGCACGTCTCTGTGTGTACGACTACTACAAGACAACCTGCTGTGCCTCCTGCACACGAGTGGCCCACAGACAGTCACAACACAGGGCACTCAGCTAGCCCCCTCCCCAGGCCTCAGACCTCTAGGGGGCCTGACACAGCGCCCAGAGCAGGCCCTCAGTTCCTGGGCCCAACACACTAACCCACAGTGGAGAGGACAGCCTAGAACCTGACTCTGGGTGGACACTGACTGGACACTATAATATGAGTGCTGAAAATACAGACGGAAAAACTGAAATACCGCAAAGAAAGGAAGTGAAAGCCCAACTTGTTTTTGGCATGTGAGGAGATTGCCAATGGGCAATACGGGAAACTGAATGGTTCGTGGAGGATGGTTGTGAAGGACACGTTTAACAGGGCTATGAGTGGAGGAGCTCTGGTGAGGCGATGATAGACAGGACACCAAACCGAAGAATATGGAACCACTTTATGGTCTGTAACCAGAATCCCCTCCAGTAAAAGTTCCTGTCTGGGTTTTTGTTGTGTTTCACGGGAAGCAGTTTGGCGCTGCCATTCACCTGAATGGGTTAAGGTCTTGAAAAAGGTCTTTGGCCGAAACGTTGATAGAATAAACAACGTGCAGAGGTGATATTGTGTGTGGGACTGCTACCACATCTGTGATGAGACTCTTGACTACCATGGCTCTCTTGGATAGCATTAAAGGAGAGGAAGATACAGTATTAAAGCAGAGCAAGATTCTGTTTGTTTTGCATAATGTATAGACTGTACACATTTTAATAAGCTTCTTTATGCTTTAAAATCCACAATATTTATGATCTAATTAACTACTTGTAGTATGAAGTTGCCCAAGCTTGCTCTTAAATCATCCCAATTATGAGGGCTCTATTCAATACTCTCCTACACAGCAGTTTAGTTGACCAAAGATTTCCCTATTTCACAGGAGGACGTGTCAAACAGTAATTGCTCAGTCCAGATCTATGGCTCTATTTAATCTGTACCGGTGAAGCGTTACAAACGGTGCAATATAAATGTTAAGGTCATTTCTGATTGAGCcaacatatgcagtgtttaccgtgatgcagtctccgctaatacggaacattgcctttaaatttcaatcacgctgtaacaCTGAACTtctgcgatacggattgaatagagccccaaGTGACAGCTCACCAGTTACACAGCAACCCTCTAACAAATTAAGCTCTAAAATGTTCATGTGTCGTTGTAGTGAATCATATATTTTGCATCACTGCTGTgtatatacagaaccagtcaaaagtttggacacatctactcattaaaggatttttctttattttgactattttctacattatagaataatagtgaagacatcaaaactaagaaataac

Function

GO: NA

KEGG:

id description
K23377 THSD4, ADAMTSL6; thrombospondin type-1 domain-containing protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU617261 lncRNA upstream 38969 74738065 ~ 74738310 (+) True G545117
TU616975 lncRNA upstream 53068 74704257 ~ 74724211 (+) True G544865
TU616952 lncRNA upstream 101811 74672260 ~ 74675468 (+) True LOC110526577
TU616895 lncRNA upstream 138091 74616543 ~ 74639188 (+) True G544805
TU616894 lncRNA upstream 159636 74616477 ~ 74617643 (+) False G544805
TU617522 lncRNA downstream 197243 74992612 ~ 74993103 (+) True G545363
TU617629 lncRNA downstream 394350 75189719 ~ 75190182 (+) True G545457
TU617632 lncRNA downstream 402937 75198306 ~ 75198529 (+) True G545460
TU617635 lncRNA downstream 404342 75199711 ~ 75200075 (+) False G545462
TU617637 lncRNA downstream 407100 75202469 ~ 75204903 (+) True G545462
XM_036980968.1 mRNA upstream 44750 74672184 ~ 74732529 (+) False LOC110526577
XM_036980969.1 mRNA upstream 44750 74672184 ~ 74732529 (+) False LOC110526577
XM_036980964.1 mRNA upstream 44750 74676188 ~ 74732529 (+) False LOC110526577
XM_036980965.1 mRNA upstream 44750 74676188 ~ 74732529 (+) False LOC110526577
XM_036980967.1 mRNA upstream 44750 74676188 ~ 74732529 (+) False LOC110526577
XM_036981783.1 mRNA downstream 107571 74902940 ~ 74903683 (+) True LOC118965044
XM_021607672.2 mRNA downstream 127027 74922396 ~ 75155528 (+) True LOC110526582
XM_036980973.1 mRNA downstream 373199 75168568 ~ 75194690 (+) False LOC110526583
XM_021607678.2 mRNA downstream 373200 75168569 ~ 75194690 (+) False LOC110526583
XM_036980972.1 mRNA downstream 373463 75168832 ~ 75194690 (+) False LOC110526583
TU616612 other upstream 489141 74287778 ~ 74288138 (+) True G544565
TU615384 other upstream 1389592 73372805 ~ 73387687 (+) False LOC100136290
TU614905 other upstream 1631932 73038621 ~ 73145347 (+) True LOC110526543
TU614766 other upstream 2010428 72765681 ~ 72766851 (+) True G542890
TU614654 other upstream 2110407 72665460 ~ 72666872 (+) True saa
TU617662 other downstream 442431 75237800 ~ 75238164 (+) True G545485
TU617795 other downstream 626492 75421861 ~ 75422752 (+) True G545601
TU618729 other downstream 1132859 75928228 ~ 75970674 (+) True G546464
TU619876 other downstream 2092063 76887432 ~ 77036313 (+) False LOC110526968
TU620306 other downstream 2482623 77277992 ~ 77279354 (+) True G547884

Expression Profile