RNA id: XM_021607672.2


Basic Information

Item Value
RNA id XM_021607672.2
length 3766
RNA type mRNA
GC content 0.48
exon number 5
gene id LOC110526582
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 74922396 ~ 75155528 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTCTCGCTTCAAATCCAAAAGATGAAAAGACATTTTGCATTGAAAATACAAGATGTAATGTTGTTTATTCGTCATTTTTTCAACGACTTTACTATTATTGCAGCGGTTGCCGGGAGGAAAGAAGAGGTACCTCTCCTTGGAGACTTCCCGGGATGCAAAACTCAAGCGCAAGACACAAGAATGGAGCGCAGTACTGCTGCTGTCTGATTGGCGAAACGTCCATCGCTTCATCTTTTCACATTAGTTCTACTCGACGAAGCTCTAACCAGGTCTGTTGCAACCAGGACTCGACCACGAGACATCTAACTTGTAGAGACAGTAGGCTAACATTTGTCTCGGGTTTGTTTAGTCGGAAAAACCTATTATTTAAGAAATAGGTGGACGGCTTTTCCGTGGTGCTGAAGATAGGACTTGGTTGATCTACGAGTGAGGAGAATCAGTACACGAGCCCACACTTTCCGCTCTGTCTTGTCAGCTTTATGATATCAGGTGCTTTCGCTAAGGCAGCAGTCTGAGCTGAGGCAGGATAGCAGGATGCTGTGGGTGGAGTGTAGGATAGTGGACGCCCTGCGTGGGAGAAGACGGATGAGGGCCACGGCCGTCAAGCTGCCCTGCTCCTTCTGGTTCCTTCTGCTGTTCGGGGCTGGAGGCCTTGTCCTCTTCATACACCTCCAGGACCTCTCAGAGATGGTCCAGCAACAGGCTCCAGGTGTGAAGCTAAGAGGAACAGCTCGGCAGTCCAGAGAGGCGCTGTGTACTCAGGACAGTGAGGGTGTGAGAGTCAGCCCAGGCCAGGACCAGAGACCGGCTGTGGAAGGCCTAACCAGCCCCATCCCCCCCATGCAGTTCCCTGCCTTCCAGTGGACCAGACATTCAGCCATCCCTGGCTCTAGGGAACAGGACATGGGCTCCCTGCGCGTCACCAAGCGCCACAGGAAACTACTGAAAACCAGCCCTGTGGTCTCTAACAACTCACACaactcctcctcgtcctcctcgggTTCCCCGGACTCTCCTGAGGAGAGCTGGCAGTGGCACAGACTGTCCCACATCCAGGAAGCTCGGCGGAGGCTGATGAAGGAGGTCTGTGCCAAGTACAAGAGCAGCATCTCCAGAACCATCACACCTCACCACGTGTCCCGGATCTATGTGGAGGACAAGTACAAGCTGCTGTACTGCGAGGTGCCCAAGGCGGGCTGCTCCAACTGGAAGAGGATCCTCATGGTGCTGTCTGGCCTGGCGTCGTCCACCCACGAGATCAAACACGACGCTGTCCACTACGGCAACCACCTCAAGAGGCTGGACAGCTTCGACCGCCAGGGCATCGCGCAGCGCTTGGAGACCTACACCAAAGTCCTGTTTGTCCGCGAACCCCTGGAGAGGCTGGTGTCCGCCTTCAGGGACAAGTTTGAGAACCCCAACACCTACTATCATCCTGTATTCGGGAAGCCCATCATCTCCAAGTACAGGGTGAACGCCTCCAAGGTGGCCCTCAGGACAGGCAGCGGCGTGACCTTCCAGGAGTTCATGCAGTATCTGTTGGATGTGCACAGGCCTGTGGGCATGGACATTCACTGGGAGCCTACCAGCCAGCTCTGCAGCCCCTGTCTGCTGGACTACAACTTCATCGGCAAGTTTGAGACCATGGAGGAGGAGGCTAATTTCTTACTACGTAGAACTGGTGCCCCGCATAACCTCACCTTCCCCAGTTTTAAAGACAGGAACCCCAAGGCTGAGAGGACTTCAACTCATTTAACCCATCGTTACTTTGCACAGCTCAGCacttcagagagacagagagcttaTGACTTTTATTACATGGACTACCTTATGTTTAACTACTCCAAACCTTTTAAAGATTTGTATTGATTGACTCTCTGATCTCTGTTTGAGTCCGCAAATCTCCCCTGGCTTTAAGTGGAGGAGCGCACCATTTACAAGTATTACTAGAAGATCATCACATGAAAACAATGTCTCGGTCAGGCATGTCAATGTGGTCCTGTATTAAATACCGATGCAAAACATTGAACTCACAAACAATTTATCACTGCACAGTCAGTGACGTGAAAAGACAGTTCAATGCTTTAAAATGTGTTACGTGAAGTGGTACCCACCTATCATTTTTTGCACTTAGTGTAGCAAATTCTTTCAAATTCTCCAAAAACATATTGACTCAGACTGAGCATTAGTCTGCCACACTACTGCTGGAGAGTGTGTCTGGACAGTCTTATAGGGGAGCATCCCCCTTAAGTATCCCTAAGTACTACTTTACCACACCATCCCACTACCCTTTAGAATACACATCCTCATCACTGTCATCAAGGCTTTTTCTGACACTAATATTTAAAAACTTTACAAAGGGCATTCAGAtgactatatatatttttctatgtaTTTCTATAATGGATATATTCACTGCTTCTTTGTGGGGATTTTCATTTCTGATATCACTGAATGTTATTTCAGTAATTATATGGTGAGTGTGTGTAGAGAATATCTGGCTATATTTAGGCCTCTTGGGTCCCCCTGTACATCAGACCCTGTAaaacacgtgtcaaactcattccatggagggccaagtgtctgcaggtttttgctcctcccttgtacttgactgATCAATGAAGGTcattgattagttaggaactcccctcacctggttgtctaggtcttagcgTACAGTCgaccctccatggaatgagtttgacaaccctgttgtAAAACATGCTGGTTAACACATGGACACGTAGAAATTCCACTCCAATCCTTCCCTAATGACCCAATAAGCCCCTGCAGTGAATTATCACTGCAGTGTTAGAGAGAACAGAACACTGACACCATCTCTTATACTGACACTGACAAAGTCACAAGGCAGCTTATCCTACCCaactctgcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgacagagagtgagacgtgtgtgagagagaacaacTGGAGCTGCTGCTCTGATCTCTTTTCATGGCTCTGAGGGGGAGTAAGCCCTGGCCCACAGCCCAGACACACTCAGACCTAGGTCCCACACAAGACAGACAACTGTGAGGACAGCTTTATGATGAGATCTCTCAACAGGGTAACAACTTTACACAACCCATAATAACACATAATCTACTGTCCCACAAACTGTACAGGCAATGGGTTGTAGGATCTGTGTGAGAAAGCTAGTGTTCAGAGAAGCCAGCAATTGGAGCAGTATTTCAAAATATCCTCTTTTACCTCCTATGAACAACACTGATTTATAGCTCCACAGTAGAGTACCACAGCTATTCTGCACAGTGGGACGGCAGGGAGAGGCAAGCACACTTGGGGCCAATCAAACACAGTTTCCTGGATAAGTCAGAAATATGATTCTTCCCTGGCTGCTAGAACGCTGGGTTGGTTGGCTTTGTGAAATCCGTCTGTAACAGAAAGAAACTCAATTGCATATGCTGTTGTGTTGTGACGTGTATACAGGTCATGTTATCGACTTGTCCCTGAAACGTGGTTGCTGTTTTTAAATGAATAGTCCTCTAATAAGTAAGTAGAATGTTCCTCATATTCAATTGTGTTCTACTCTGCAGCTCTAGTTAGAATGAATACCCCAGACaagccaggg

Function

GO: NA

KEGG:

id description
K09672 CHST8; carbohydrate 4-sulfotransferase 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU617261 lncRNA upstream 184086 74738065 ~ 74738310 (+) True G545117
TU616975 lncRNA upstream 198185 74704257 ~ 74724211 (+) True G544865
TU616952 lncRNA upstream 246928 74672260 ~ 74675468 (+) True LOC110526577
TU616895 lncRNA upstream 283208 74616543 ~ 74639188 (+) True G544805
TU616894 lncRNA upstream 304753 74616477 ~ 74617643 (+) False G544805
TU617629 lncRNA downstream 34191 75189719 ~ 75190182 (+) True G545457
TU617632 lncRNA downstream 42778 75198306 ~ 75198529 (+) True G545460
TU617635 lncRNA downstream 44183 75199711 ~ 75200075 (+) False G545462
TU617637 lncRNA downstream 46941 75202469 ~ 75204903 (+) True G545462
TU617641 lncRNA downstream 50755 75206283 ~ 75206642 (+) True G545464
XM_036981783.1 mRNA upstream 18713 74902940 ~ 74903683 (+) True LOC118965044
XM_021607670.2 mRNA upstream 127027 74777279 ~ 74795369 (+) True LOC110526579
XM_036980964.1 mRNA upstream 189867 74676188 ~ 74732529 (+) False LOC110526577
XM_036980973.1 mRNA downstream 13040 75168568 ~ 75194690 (+) False LOC110526583
XM_021607678.2 mRNA downstream 13041 75168569 ~ 75194690 (+) False LOC110526583
XM_036980972.1 mRNA downstream 13304 75168832 ~ 75194690 (+) False LOC110526583
XM_021607677.2 mRNA downstream 13306 75168834 ~ 75194690 (+) False LOC110526583
XM_021607673.2 mRNA downstream 13918 75169446 ~ 75194690 (+) False LOC110526583
TU616612 other upstream 634258 74287778 ~ 74288138 (+) True G544565
TU615384 other upstream 1534709 73372805 ~ 73387687 (+) False LOC100136290
TU614905 other upstream 1777049 73038621 ~ 73145347 (+) True LOC110526543
TU614766 other upstream 2155545 72765681 ~ 72766851 (+) True G542890
TU614654 other upstream 2255524 72665460 ~ 72666872 (+) True saa
TU617662 other downstream 82272 75237800 ~ 75238164 (+) True G545485
TU617795 other downstream 266333 75421861 ~ 75422752 (+) True G545601
TU618729 other downstream 772700 75928228 ~ 75970674 (+) True G546464
TU619876 other downstream 1731904 76887432 ~ 77036313 (+) False LOC110526968
TU620306 other downstream 2122464 77277992 ~ 77279354 (+) True G547884

Expression Profile