RNA id: XM_021607676.2


Basic Information

Item Value
RNA id XM_021607676.2
length 2028
RNA type mRNA
GC content 0.50
exon number 5
gene id LOC110526583
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 75168568 ~ 75194690 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGCTTCTTCCTGTGCCGCTTTTGTGGACAGAGCTTGGTCTGAGCAAGTCAGCCAGCATCAGCTATAGATCTTTAAAGCCACAGCGACCCTTCTTTTTAATCAATGTAGCTTTCACTGTTAGATTCACATGCTTTAGAACAGTTTGTGGATACAGTGTTGGCAGTTTCGTTCCAAAGGAGCGGATTCTACTTGAGGAATGCTTGGGTCAGCTATTGGATGGCACTCTAGTTATACGAAACTCCGGGCATGTGAAAAAGGGGAACGCAGTCATCAGCTGGGACTGATAGATACTGGAACGGATTCCCTCGGACTCCTACGATGTTTGAAACGGAAGGAAGAAGCATGTCACGACTGTCTTTGACCCGGTCCCCGGTATCTCCTATGTCCACACAAGGAATCCCTCTACCGGCTCAACTGACAAAGTCGAATGCTCCGGTTCACATTGACGTCGGGGGACACATGTATACTAGTAGCCTGGCTACTCTCACCAAATACCCAGACTCAAGAATCAGCCGTCTGTTTAATGGCACAGAGCCCATCGTGCTGGACAGCTTGAAGCAGCACTACTTCATCGACAGGGATGGAGAAATATTCCGTTACATTCTCAGCTTCCTCAGGACCTGCAAACTGCTTCTCCCAGATGACTTCAAGGAGTTCCACCTGCTGTACGAGGAGGCTCGGTACTACCAGCTGTCCCCCATGATTAAGGAGCTGGAGCGTTGGAAGCAGGAGAGGGAGCAGCGCAGGACGGCCCAGCCCTGTGACTGCCTGGTGGTGCGGGTGACGCCTGACCTAGGTGAGAGGATCGCCCTTAGCGGGGAGAAGGTGCTCATCGAGGAGATCTTCCCCGAGACTGGAGACGTCATGTGCAACTCGGTGAATGCCGGCTGGAACCAGGACCCCACGCATGTCATCCGCTTCCCCCTCAACGGCTACTGCAGGCTCAACTCTGTCCAGGTTCTAGAGCGTCTGTTCCAGAAGGGTTTCAGCGTGGCAGCGTCCTGCGGCGGCGGGGTGGACTCCTCCCAGTTCAGCGAGTACGTGCTGTGCCGTGAGGACCGCCGGAGTATGTCCATGAACACCCCCATCAGGATAAAACAGGAGCCCCTGGACTAGAGAgacattaggagaggagagggactagcCACGAGGGGCTCCTCACCCCCCtactggacagaacagaacaaaccCAAACCCTAATATCCCTCCACCTCACACCACAAAAACCAACCCAGCAAGAAACACCTAAGTATTAGCAGACGCCTGATAACGTTGCCAGCTCTGAGGAACTCAGTGCTCTAAGGGGAATGTAGTATAAACAcaaaaaaggaaagaaaaaaacaaaaggATTTGATTCTGTTTACTAATAACACCCAAAGAAATATAGGACTATGATGATGAACAGAAAGACTGAAACAGCAGCTCCATCTCTTGAACCATTTAAGCACCGTGACCAATCTCTTTTTCCTCCAGTTGTAAGGCTCTCTGACCCCTTGTGAAGAGGTGTCCTGACCTCAGTGAGGAGCACGGCCCCCTTGCCCTCAGTGCAGCGCATGGCGGTGTGTCGTCCAGTCCCGTACGTGTCTGTGTGAGGCCCATGTGTTGTGTGCTCCGTCCAGTGCAGCTGAGTTTGGGACAAGACAGGTGCTATTTAGGGAGGCCTGGCCTGACAAGAGACAGGgctgacagagaggaagaggaggaagtgaCAGCCATCCAGCCCACATTGCTCTTATAGCCAGCAACCAGGCCTCGCAGCCAAGGGAGGTCCGATTGATTGTCTTTCTTATTTTCATTGTTGTTTATAAAGTACAACttttttctctgttttctttGCTGTTTTATCACAACATGGTGTAAACAATTATTAATAGGATTGTTTtatgttttttccccctcgtATATGAAGGATGTATGAGCGTTGTATTCAGTCAGTAGGTTTGAAAGCTTGAGAGaatgaaaaagagagacagagagagagacagagacagaaagagagagagagagaaagagagaaagagagaga

Function

GO:

id name namespace
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0051260 protein homooligomerization biological_process
GO:0044335 canonical Wnt signaling pathway involved in neural crest cell differentiation biological_process
GO:0060037 pharyngeal system development biological_process

KEGG:

id description
K21754 KCTD1_15; BTB/POZ domain-containing protein KCTD1/15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU617522 lncRNA upstream 176343 74992612 ~ 74993103 (+) True G545363
TU617261 lncRNA upstream 431136 74738065 ~ 74738310 (+) True G545117
TU616975 lncRNA upstream 445235 74704257 ~ 74724211 (+) True G544865
TU616952 lncRNA upstream 493978 74672260 ~ 74675468 (+) True LOC110526577
TU616895 lncRNA upstream 530258 74616543 ~ 74639188 (+) True G544805
TU617632 lncRNA downstream 3616 75198306 ~ 75198529 (+) True G545460
TU617635 lncRNA downstream 5021 75199711 ~ 75200075 (+) False G545462
TU617637 lncRNA downstream 7779 75202469 ~ 75204903 (+) True G545462
TU617641 lncRNA downstream 11593 75206283 ~ 75206642 (+) True G545464
TU617647 lncRNA downstream 22648 75217338 ~ 75217617 (+) True G545470
XM_021607672.2 mRNA upstream 13918 74922396 ~ 75155528 (+) True LOC110526582
XM_036981783.1 mRNA upstream 265763 74902940 ~ 74903683 (+) True LOC118965044
XM_021607670.2 mRNA upstream 374077 74777279 ~ 74795369 (+) True LOC110526579
XM_036980967.1 mRNA upstream 436917 74676188 ~ 74732529 (+) False LOC110526577
XM_021607679.2 mRNA downstream 121815 75316505 ~ 75324636 (+) False LOC110526584
XM_021607680.2 mRNA downstream 121815 75316505 ~ 75324636 (+) True LOC110526584
XM_021607687.2 mRNA downstream 199107 75393797 ~ 75408675 (+) False LOC110526588
XR_005052239.1 mRNA downstream 199107 75393797 ~ 75408675 (+) True LOC110526588
XM_021607689.2 mRNA downstream 260297 75454987 ~ 75456513 (+) True LOC110526592
TU616612 other upstream 881308 74287778 ~ 74288138 (+) True G544565
TU615384 other upstream 1781759 73372805 ~ 73387687 (+) False LOC100136290
TU614905 other upstream 2024099 73038621 ~ 73145347 (+) True LOC110526543
TU614766 other upstream 2402595 72765681 ~ 72766851 (+) True G542890
TU614654 other upstream 2502574 72665460 ~ 72666872 (+) True saa
TU617662 other downstream 43110 75237800 ~ 75238164 (+) True G545485
TU617795 other downstream 227171 75421861 ~ 75422752 (+) True G545601
TU618729 other downstream 733538 75928228 ~ 75970674 (+) True G546464
TU619876 other downstream 1692742 76887432 ~ 77036313 (+) False LOC110526968
TU620306 other downstream 2083302 77277992 ~ 77279354 (+) True G547884

Expression Profile