RNA id: XM_021607680.2


Basic Information

Item Value
RNA id XM_021607680.2
length 4355
RNA type mRNA
GC content 0.44
exon number 9
gene id LOC110526584
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 75316505 ~ 75324636 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCACCATTCTTTGCGGTGAGGCAAGGCATCATAAGAAAACGGCCATGTCGTTGTGCTAGCAAATTGGTGGAAGAACGAACGAGCAATAATCTTTGTTAGAAGTGTGCAAACAGGACTAAATAACGTAGCTAGCTACTTTCCATATACTTTTGGAAGATATATATTTATTTCCCACACTCAAATAAAAAGGAAGACGGTATGAGTGGAGGGACACCCTACATCGGGAGTAAAATTAGCCTAATCTCGAAGGCCGAGATTCGCTATGAGGGGATTTTATACACAATTGACACCGAAAATTCGACTGTTGCCCTCGCCAAAGTCCGCTCCTTTGGCACTGAGGACCGCCCTACTGACAGGCCAATTCCACCACGGGATGAAGTCTTCGAGTACATAATCTTCAGAGGGAGTGACATCAAGGACCTGACTGTTTGCGAGCCACCAAAAGCCACCAGCTCCCTGCCTCAGGACCCTGCCATTGTTCAATCCTCTATTGGATCCACCAATGCTCCACCCCCATCATTCCAGTCTGTGGGCTCATATGCACCCTTTAGCGGCAGGGCTCCTGTCCCCCCTTACAGCCAGTTTAACCCCAGCCCCCTGGTGTCCCAGCAGTTTGGAGTTGTCGGTGGAGGTCGCACCAGTCCCCAGCTGGACACTCTGAGGAAGAGCCCTTCCTTGGAGCAGGCAGTGCAGACTTCCCCCACCACTGCCCCTGCTGCACCTGCACCAGTGGGACAAAGGAGCCCAGCTGGCCCATCAGCCAGGCCCATCACTACCCTGGGCAACCAGAAGCCTCCAGACATCCTGGAACAGAGGAGGGGCCCTGAGGTTCAGAAAATACCCAGAACAGATTCCGAGCAAGGTGGTGGCGACAACCGGAATCACCGTCAATGTGCCGGTGGTCCTCCCCCTCAGCGCCGTGGTCGTGGAGGTGGTCACCGTGGAAGAGGCCGTTTCAACCCACACAGGGACGGTCCCATGAAGTTTGATCAAGACTTTGACTTTGAGACTGCCAACGCTCAGTTCAACAAGGAGGAGATTGAAAAAGAGTTTCAGAGCAAACTCAAACTGAAAGATGACAAGCCTGATAAACCAGAGAAGGCTCTTAATGGAGATGAGAAGGCAGATTCTGGAGTGGAGACCCAGAACAGTGAAGGCAATGCTGAGGAAGAGGAACCTGTGGTGGCCAACGTTTACTACGACAAGACTAAGTCCTTCTTTGATAACATATCTTCTGATGATACAAGGAAAGCAGCGGAGCGATCTGGCGGTTCAGGATTCCCAAGAAGGCAGACttgggctgaggagaggaggatgaattCGGAGACCTTTGGCATTCCACTGAGGCACAACCGAGGCCGAGGAGGCTTCAGAGGAAGTCGTGGCGGCGTGGGCTTCCGTGGGGGCAGAGGGCGTGCCATGAGCAGAGGTTCCTTTGGACCCCCCCGCGGGGCCCCACCCGGCTTCAGGGGAGGATTCCGAGGAAGCAGCAGAGGTGGCCGGGAGTTCGTTGAATATGAATACAGGGATAACAAAGTGGCCGCGTAGTGTACCAGAGAGATGGATCCACCAAGAATCGTAGCCCTTCATGGTCCAGAAATATTTGTCAAAAAGATTGACAACATACTCTGTAAATTTCCCACCAGCACTGGGGTTGACTGCTTGATTTCAACGGGTGTGAATGCAGTTTCTTTAccaatttcattttttttctcccaaaaATACAACAAAGGATTATAATGTGCTTTTGAGAATTTGAGCATTGTTTGATATTATACAGTAATCAGAGTGACAAGAACTTGTGTAAATATTGTACTCCAGTGGAATTATTCAGTATTTTTGCATCTATTTGAGTTCCTTTCTTACTAAAATTGTATTTGATAATGTTCTGTTGTGTAAAGATGTATGCAGAATCCCGCTGATACTGTGAGTACTTTGATCACTGAAAAATAGCTTTATTTTTTGGGGATATATCCTGCAATGTACCTTAGGAGCACTAAAATCCTACATAGCCTGTCGGGTCACAgtttttgttttttatattttcctaGTCTATTTCTTAGCCGTTTATCCCGTGTTTTGACGTTCTGCTGTACTTTGCCAAGTTTCTTAAACTATTGTTTCAGTGTTCCTGCTAaaagactaaaatgtaaatgttcttGGGGTACATCAAGTAGATAAGTGGTTTACATCATAGGCTCACTTTTGTTGTTGTAGAGCTCCTGCTTTCTAATTAAGGTAGTCAGTTCAGACCTTTAAGCTATTTATACAAGATCGGAGTAGGTCAGACATCCTGAAAACATTTTGGAGCGTTTTCACTAATCGGGATCATTTGTTTTATAATCTTACTGAATATTGAATGAATGTATTTCTACTGCATCACGCTGTTATTTCTGCACCAAAGATATTTTGTGGTTGCCACTTAACTTCTGGTTTTAGAAATGCATATGAATGAATTGATTCAGAGGTTTTGGGATGTTTTCTCTACCCCTAAGCATGCCCTGTGGTTCCCAACACCTGCTAATGCTGGTCACCAACTACAGGTCATGTTGGGAAGGACTGCAGTCCTTGTGATGGGGTGTGCTGCACATATTTGCTCTGGCATATTTTTGTTAAATGTAGTGTTGGTGACTATTGCTCTTTTTAGTGTAGTCAATGTCGTCAAAGGAGGCTTTTCTGCAACAATCATGGCTGAACTTGGAGCATCAGTCATTAGAAATGTCTAGCTAGCCTTCATCTCCCCAGCGCTTGAATATGAAATAACTGCCATGTTTTAACTAGCCGCTTAACAAGTGTCTATGGTATTAAATCATTGTTGACCTCTAAATGTTTGCCCTGCAAGAGAAGATGGCTGCTTCTGGCCTAGACTGCTGTGTAACCAGATTGATCTTGTCCCCAGTATGGAATACGACTGGGAGCATTGGGCTACTTATTCTGTTTGTTTCAAAACAATTTGCAATTCAACAAGtgttacagatgtatgttgacaTTTTTCTAGCAGACAATCTTGCTTTGCCTGATGGTCTATTGGCATGCTTGGCCCTTGTATGGTGTTGCATCTGAAAAAACAATCTGGTGTGCTCAACTCGAAACAAAGATGCtggtgttttttgtttttcagtcCCACTAATGTAACTTCAGTGAATAATAGTATCATTCACCAGCTGTATTGACATTGTAGTAGCCTGGCACACAAGTGATTCTAACGTAAGCTTGTCCTGAAAAAAAGAACATCAATTTGTTGAAGTGGCAATATGTTGGGGAGAGTAAGGGCTGTATAACTTGGGAAAAATCTTCAGCCATCAGAGATAATATTCTGCACAACTAGGTTTGAGTATACATTCATAGATTTATTTTAAGTCCAACCGCTAAGTTtacatgaggttgaaggaaacAAATTCACTTGTTGGAAGAAGTTAGATGAAAAGTAGTGAAGTTACTCCAGGCCTTAAAACCAATCTACTAAGCTTCTGGAAGAATTCCTAGTGATCCAATTCCAGCATTTGTAATAAACCGCATCGGTGCTTTAAGCTTGCAATGTTTGTCCCTTTCCCCATGCTTGGGGAAGTCTATTGAGCACTGTCTATTGTCCAGCACTTGCAGTTTGGAGGATTGTCCATAAAATCATACCTCTTGGGGCGATTCAGATTTTTAATGGgatattttctttttttaagaTAAAGGGATGTGAACTGGATGTTGAGACCAGTGGATAAGGGGGTGGATTTTTCAGATGTTCTCACTTTTTGTCAGTATGTTTGAGAGTGCTAGAAGGAGGGTTATGCATTTATCTTTCTCTCAATTGacctacatacagtatgatgACAATATGTAAGCTGTACTATTTGAAAACACTACAAGATAAACCTGATCTAGAACATAAAAAATGTTGGGCAGCTAGGCCAATATATCCTGTAGTTCATAAATGTGCAGTTTGACTGAATTGTTGTACAGATTGATAATACAGAGCAATGTATGGCAGCCTTAGCCTCGTACAAATCATCCTGATCTGTGAGCTTGTGAGATCAGGGTGGCTTGTATGGGGCTATGGCAGCCATGCCTTGtgataaaacacaaaataatgacTCCGAACAAGGATTATACACAGGAGCCTGGGCAGTTGCAATAACCACATCGGTGTAAGGTCCAGAGCTAATTTGAGATTTCAAACAGTACATATTACCTACATATTGCTGTAAAGTTTTGATTACATTAGTTACTTCTTCCGACCTCTGGAATAATAAAGCCAGATATTGTTTCTAAATAAGGCAGTTGAACAGCATGGTGTACTTCAAGTGGGCCGACCCTCTGCAGACAGGTTTTTACTCTATAAAAATAAACAATTGTTCAATAGC

Function

GO: NA

KEGG:

id description
K18749 LSM14, RAP55, SCD6; protein LSM14

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU617686 lncRNA upstream 59277 75257002 ~ 75257228 (+) True G545506
TU617684 lncRNA upstream 60925 75255374 ~ 75255580 (+) True G545504
TU617674 lncRNA upstream 70262 75245816 ~ 75246243 (+) True G545494
TU617658 lncRNA upstream 84303 75231856 ~ 75232202 (+) True G545481
TU617656 lncRNA upstream 86141 75230066 ~ 75230364 (+) True G545479
TU617672 lncRNA downstream 10374 75335010 ~ 75337018 (+) True G545492
TU617794 lncRNA downstream 94413 75419049 ~ 75490051 (+) True G545600
TU617812 lncRNA downstream 119054 75443690 ~ 75444352 (+) True G545618
TU617833 lncRNA downstream 163369 75488005 ~ 75498286 (+) True tent4b
TU617884 lncRNA downstream 272529 75597165 ~ 75597427 (+) True G545684
XM_021607678.2 mRNA upstream 121815 75168569 ~ 75194690 (+) False LOC110526583
XM_021607687.2 mRNA downstream 69161 75393797 ~ 75408675 (+) False LOC110526588
XR_005052239.1 mRNA downstream 69161 75393797 ~ 75408675 (+) True LOC110526588
XM_021607689.2 mRNA downstream 130351 75454987 ~ 75456513 (+) True LOC110526592
XM_021607691.2 mRNA downstream 131966 75456602 ~ 75459378 (+) False LOC110526593
XM_021607690.2 mRNA downstream 131976 75456612 ~ 75459378 (+) False LOC110526593
TU617662 other upstream 78341 75237800 ~ 75238164 (+) True G545485
TU616612 other upstream 1028367 74287778 ~ 74288138 (+) True G544565
TU615384 other upstream 1928818 73372805 ~ 73387687 (+) False LOC100136290
TU614905 other upstream 2171158 73038621 ~ 73145347 (+) True LOC110526543
TU614766 other upstream 2549654 72765681 ~ 72766851 (+) True G542890
TU617795 other downstream 97225 75421861 ~ 75422752 (+) True G545601
TU618729 other downstream 603592 75928228 ~ 75970674 (+) True G546464
TU619876 other downstream 1562796 76887432 ~ 77036313 (+) False LOC110526968
TU620306 other downstream 1953356 77277992 ~ 77279354 (+) True G547884
TU620456 other downstream 2187973 77512609 ~ 77523423 (+) True G548000

Expression Profile