RNA id: XM_021607687.2


Basic Information

Item Value
RNA id XM_021607687.2
length 2845
RNA type mRNA
GC content 0.48
exon number 18
gene id LOC110526588
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 75393797 ~ 75408675 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTCTCGCGCCTTACGGTCTCACTCAGCCAGGGTAGTTGAGCTGAAAGGACCGCGCCCAACACATATCGACACCATGGGACTCACACACGACCCAACCTTCCAGAAACTGGAGAAATGGTACCATGAACATGCTCTGCACCTCAACATGAGGAAGATGTTTGAGGAAGACAAGGAGAGATTCCACAAATTCAGCACAACGCTGAAGACAGATCATGGAGACATTCTGATTGATTACTCTAAGAATCTCATCACTGAGGATGTCATGAAGATGTTGGTCGAACTGGGCAAGTCGAGGGGGATTGAGGCCACCAGGGACAAGATGTTCCATGGAGACAAGATCAACTTCACTGAGGGTCGTGCTGTGCTCCACGTGGCTCTGAGGAACCGCTCCAACCATCCCATCATGGTTGACGGACATGATGTGATGCCTGAGGTCAACAAAGTCCTGGAGAAGATGAAGGGCTTCTGCCACAAAGTTCGCAGTGGCGAGTGGAAGGGCTGGACTGGAAAGTCCATCACAGACGTTGTCAACGTCGGCATTGGTGGATCGGACCTGGGTCCTCTAATGGTGACTGAGGCTCTGAAGAACTACTCCAAGGGAGGTCCCCGTGTGCATTTTGTCTCCAACATTGACGGCACACACATCGCCAAAACCCTTGCTGAGCTCAATGCTGAGACCACCCTGTTCATCGTGGCCTCCAAGACTTTCACCACCCAAGAGACCATCACCAACGCAGAGTCTGCCAAGGAATGGTTCATTGAGCACGCTAAAGATAAATCTGCTGTTGCCAAGCACTTTGTGGCGCTCTCCACTGCCGGCCCTTTAGTGAAGGCCTTTGGCATTGATCCTGACAACATGTTTGGCTTCTGGGATTGGGTTGGTGGACGTTATTCCCTGTGGTCTTGTATTGGATTGTCCATTGCTCTGCACATCgGCTATGACAACTTTGAGAAGCTTCTAGAAGGGGCTCACTGGATGGACAACCATTTCAAAACAGCCCCTGTGGAGAAGAACGCTCCCATGCTCCTGGCTCTGCTGGGTGTCTGGTACATCAACTTCTTCCAGGCCGAGACCCACGCCATGCTGCCTTATGACCAGTACATGCACCGATTCGCTGCCTACTTCCAGCAGGGTGACATGGAGTCCAATGGAAAGTACATCACTATCCATGGCAAACGTGTCAACTACCATACTGGCCCCATCGTATGGGGAGAGCCTGGCACCAACGGACAGCACGCCTTCTACCAGCTCATTCACCAAGGAACTCGCATGGTCCCCGCTGACTTCCTCATCCCTGCCCAGACACAGCACCCCATCAGGGAAAGTAAGCACCATAAGATCCTGATGGCCAACTTCCTGGCCCAGACTGAGGCTCTGATGAAAGGAAAGACCACAGAGGAGGCTAAGAAGGAACTGGAGGCCGGCGGCCTGACAGGAGAGGCCTTGGAAACCATTCTGCCACACAAAGTATTCCAAGGAAACAAGCCAACCAACTCTATTGTCTTCAAGAAGCTGAACCCATTCACACTGGGAGCACTTATTGCCATGTATGAACACAAGATCTTTGTCCAGGGTGTTATGTGGGAGATCAACAGTTTTGACCAGTGGGGaGTTGAGCTGGGTAAGGCTTTGTGTAAGAAGATCGAGCCTGAGCTGCATGGCTCCAACGAGGTCCACTCTCACGACTCCTCCACCAACGGGCTCATTAACTTTATCAAGAAGAACCACGTCTAACCTGCCCACCACCGTCATCCATCCTCCCTGTCCTGCCCCCCTGCTGATGGGGGTGTCTGGGCTGTAGTGAAGGTAGACTCACTGCAGCATGTGTCACCATGCAGAGGAGTAGAAGCACTTTCTATGTCTGTAATCATCTGTCTGCGTCCTGTCTGTTTGTTGTGACATCGGACTGTATTTTACATACTGTTGTatgtttaagcaataaggcccgagtcggtgtggtatatggccaatataccacggctaagggctcttAGGCGatacgcaacgcggagtgcctggacacagctcttagtcgtggtatattagccatataccacaaatccctgaggtgccttattgctattataaactggttgccaacgtaattagaagggtaaaaataaatgttttgtcatacctgtggtatactgtctgatgtatcagccaatcagcattcagggtttgaaccacccagtttatagttATGGGTTTACCACTGTAAAGGGGAACGCTACTGTAGAGTGAGCCTGTGGAGGGGAGTGTAAACTACATCCCAGACTATCCCACTCCACTTATGGGGAGTAAAGCTTTTAATTAACATCTTTACACCAATCTATTGTCTGTGTCCTTAGTTGATTCTAGCCTGCATTCTGTTCAGAAGTTTGCAGTTGCAGACAATCCTAGAGGATAATGATGCATTTATGTATGAATAATGGAACCCACTTTCAAACCACACTCTCAATAAATCCAATGAGTTTTACTCATAGGGGAATGAAAGTGTTCCTTTATGTCCAAACCATCACTAGATGGCATTAGAGGACCCCAGATTTGGCCCAGTATAAACCAAACCAGCCTCAGATCAAATCACTGCTGTGCTTATTCTCTGGAACACAGGGTCAGAGGTCAATCTATCTCCTATATTTTCCATCCCCACAAATCCCCAGACATCAGACTGTTAACTAGCATCCATACTCAGAGAAAAACAAACAGCAGGCAGAAATACATCTGGAAAACATCATGTGATATGCAGGCCCCTCAATGTGAGACAGTTTAATCATCATTAAGCTCTATGATATGTGACTAAAACTCCATTAAACAAAATACtctgtgaatttcaaacaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU617672 lncRNA upstream 56779 75335010 ~ 75337018 (+) True G545492
TU617686 lncRNA upstream 136569 75257002 ~ 75257228 (+) True G545506
TU617684 lncRNA upstream 138217 75255374 ~ 75255580 (+) True G545504
TU617674 lncRNA upstream 147554 75245816 ~ 75246243 (+) True G545494
TU617658 lncRNA upstream 161595 75231856 ~ 75232202 (+) True G545481
TU617794 lncRNA downstream 10374 75419049 ~ 75490051 (+) True G545600
TU617812 lncRNA downstream 35015 75443690 ~ 75444352 (+) True G545618
TU617833 lncRNA downstream 79330 75488005 ~ 75498286 (+) True tent4b
TU617884 lncRNA downstream 188490 75597165 ~ 75597427 (+) True G545684
TU617926 lncRNA downstream 249620 75658295 ~ 75658516 (+) True G545725
XM_021607679.2 mRNA upstream 69161 75316505 ~ 75324636 (+) False LOC110526584
XM_021607680.2 mRNA upstream 69161 75316505 ~ 75324636 (+) True LOC110526584
XM_021607678.2 mRNA upstream 199107 75168569 ~ 75194690 (+) False LOC110526583
XM_021607689.2 mRNA downstream 46312 75454987 ~ 75456513 (+) True LOC110526592
XM_021607691.2 mRNA downstream 47927 75456602 ~ 75459378 (+) False LOC110526593
XM_021607690.2 mRNA downstream 47937 75456612 ~ 75459378 (+) False LOC110526593
XM_036980976.1 mRNA downstream 48144 75456819 ~ 75459378 (+) True LOC110526593
XM_021607688.2 mRNA downstream 50984 75459659 ~ 75468641 (+) True heatr3
TU617662 other upstream 155633 75237800 ~ 75238164 (+) True G545485
TU616612 other upstream 1105659 74287778 ~ 74288138 (+) True G544565
TU615384 other upstream 2006110 73372805 ~ 73387687 (+) False LOC100136290
TU614905 other upstream 2248450 73038621 ~ 73145347 (+) True LOC110526543
TU614766 other upstream 2626946 72765681 ~ 72766851 (+) True G542890
TU617795 other downstream 13186 75421861 ~ 75422752 (+) True G545601
TU618729 other downstream 519553 75928228 ~ 75970674 (+) True G546464
TU619876 other downstream 1478757 76887432 ~ 77036313 (+) False LOC110526968
TU620306 other downstream 1869317 77277992 ~ 77279354 (+) True G547884
TU620456 other downstream 2103934 77512609 ~ 77523423 (+) True G548000

Expression Profile