RNA id: XM_021607690.2



Basic Information


Item Value
RNA id XM_021607690.2
length 909
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC110526593
representative False

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 75456602 ~ 75459378 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTTTAAACCAATCACCGTACATTTTCCGAAATCGTCCAATCCACGTTAAGGTTTTCGCCTGTTCCCAATTGCCCAGGAGAACTAGCTAGCACGTCCACCAGCCGGAGAGAAGAGCAATGAATTCCTTGGAACAGGCCGAAGGTAGTCAACATGACCTGAAAGCTTTTGAGAGAAGATTGACAGAATACGTCTCCTGTTTGCAACCTGCAACCGGGAGGTGGCGAATGATTCTAATAGTGGTCTCAGTTTGTACGGCGACTGGAGCCTGGAACTGGTTGATAGACCCTGACACACAGAAGGTGTCTTTCTTCTCATCGTTGTGGAACCATCCGTTCTTCACCATCAGCTGCATCACTTTGATCGCTCTGTTCTTTGCTGGAATACACAAACGAGTCGTTGCACCATCAATTATTGCAGCTCGCTGTCGGACAGTTTTAGCTGAATACAACATGTCCTGCGATGATACGGGGAAACTAATTCTCAAACCACGGCCACACATCCAATAACCACAAACTCTTGGGGGGGTGGGAAATAAAATGTTCTTAATGACTATGTTGGTTGCCAGTAAACGACAGACTGACACAAGGACCAGAATCCTGTTTGGAGGATCTGAAACAACGTAAGAAGGAAGGAGATAGGGGAAATACTGAGGGGTGTTTATGTTGATGTGCTCCATTATGTATTAATGAAGGATtgtgaggggagaggacatcAACTGCCTTTTTAACAGCATCTCAGTCAGTGTTACGGTCGCCCTTAAAGCTGCTTCTGGACTCACACACCCTTTGACATAACTCATTCGCCATGAGTTCAGATGTTCATTTCTAATGATGacatgcattttgttttagaGATCTTTCTATTTTTAAACTAATTGTTATATACCTAATAAATACTTGTATGAAGATG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU617812 lncRNA upstream 12260 75443690 ~ 75444352 (+) True G545618
TU617672 lncRNA upstream 119594 75335010 ~ 75337018 (+) True G545492
TU617686 lncRNA upstream 199384 75257002 ~ 75257228 (+) True G545506
TU617684 lncRNA upstream 201032 75255374 ~ 75255580 (+) True G545504
TU617674 lncRNA upstream 210369 75245816 ~ 75246243 (+) True G545494
TU617833 lncRNA downstream 28627 75488005 ~ 75498286 (+) True tent4b
TU617884 lncRNA downstream 137787 75597165 ~ 75597427 (+) True G545684
TU617926 lncRNA downstream 198917 75658295 ~ 75658516 (+) True G545725
TU617944 lncRNA downstream 227369 75686747 ~ 75689195 (+) True G545742
TU617917 lncRNA downstream 244112 75703490 ~ 75728642 (+) True G545716
XM_021607689.2 mRNA upstream 99 75454987 ~ 75456513 (+) True LOC110526592
XM_021607687.2 mRNA upstream 47937 75393797 ~ 75408675 (+) False LOC110526588
XR_005052239.1 mRNA upstream 47937 75393797 ~ 75408675 (+) True LOC110526588
XM_021607679.2 mRNA upstream 131976 75316505 ~ 75324636 (+) False LOC110526584
XM_021607688.2 mRNA downstream 281 75459659 ~ 75468641 (+) True heatr3
XM_021607692.2 mRNA downstream 14665 75474043 ~ 75496218 (+) False tent4b
XM_021607693.2 mRNA downstream 39318 75498696 ~ 75572903 (+) False LOC110526596
XM_021607694.2 mRNA downstream 39318 75498696 ~ 75572903 (+) False LOC110526596
XM_021607696.2 mRNA downstream 39318 75498696 ~ 75572903 (+) False LOC110526596
TU617795 other upstream 33860 75421861 ~ 75422752 (+) True G545601
TU617662 other upstream 218448 75237800 ~ 75238164 (+) True G545485
TU616612 other upstream 1168474 74287778 ~ 74288138 (+) True G544565
TU615384 other upstream 2068925 73372805 ~ 73387687 (+) False LOC100136290
TU614905 other upstream 2311265 73038621 ~ 73145347 (+) True LOC110526543
TU618729 other downstream 468850 75928228 ~ 75970674 (+) True G546464
TU619876 other downstream 1428054 76887432 ~ 77036313 (+) False LOC110526968
TU620306 other downstream 1818614 77277992 ~ 77279354 (+) True G547884
TU620456 other downstream 2053231 77512609 ~ 77523423 (+) True G548000
TU620974 other downstream 2354997 77814375 ~ 77817061 (+) True LOC110526614

Expression Profile