RNA id: XM_021607688.2


Basic Information

Item Value
RNA id XM_021607688.2
length 2959
RNA type mRNA
GC content 0.50
exon number 15
gene id heatr3
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 75459659 ~ 75468641 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATAAATACGACACCCCTTATGCATTGCGAGAGTAAGGACCATTTTACGGCACCCCGACGAATCTCCACCGATGTTCCACATGGCTTAAAATGATGCGAAACGTGAGAGTGTGACAGCCTACTACATGATAGATTAAGTGAGAAACGATATTGATCGAAATAAACTATGGGTAAAAGTAAGACTAACAAATTTAGACGTCCACAGTTCAACGCAGAGGGACTGTCTGTAACTGCTGTAAAGGAAGTGGAAGAGGACCACGATGAAGTCTGTGATGGAGTCGACTCTCCAGCTGGGGAGTTACTGGAgaaaTTGCAGAGTCCCAGTGCAGATGTGCGTGAGTTTGCTTGTGCCAGCATATCACGCCTCGTGCAGCAGAGCCAGACCATCCCAGGCTTCCTCCAGCGGGATGCGGTGAGACGTCTCGGGCCCTTACTGCTGGACCGCAGCCTGGCCGTCAGGGAGACTGCCACAGGGGCACTCAGGAACCTGAGTGCCTGTGGGGGTCATGAGGTGTGTGAGGACATGGTGAAACAGGACGTCATGACTCCTCTGACTGCTCTGCTTCGAGAGTGCTGTGCTGTGTTTGAGACCAATGATGCCCTCTCGTTAAAAGGGCAGAAAAACACAGTGGAAGATGTAGCCAATGAAGCAGTTAACTTGCTGTGGAATCTCTGTGAGAGCAGTAGCCAGGCACTCTCTGTGTTCAACAAAGCAGGCATTCTGGATGTTATCCTACAGTGTCTGGAGCGACACACTCACAACATCAAGCTGGCTTTGTCTGCAGCCCACTGTTTGCACACAGTGACTGAGGACAACGCAGAGTTGCTGTGTAGTATGAACAATGCTGTATTGGGGACTCTAGAGAGTGTGCTGCTATCCTCACAGGCGGACATGGCTCACACACTGCTCAGAACACTGGCTGCAGGGTCAGTGTGGAACCTGAAGAGCAGCCTGCCCACGGCCCGCCAGGCCCAGACCCTCAACGCCCTGATGGCCACCCTGTCCCAGTGCTTGGAGCTGGATGCTGGCACGCTGATACCCCAGCTCCGCCAGGCTGAGGTGGCCCGCAGTGCCACTGCCTCAGAGGCAGGGAACATGGAGGACCACCAGGCAGCTGCAGGGAATATGGctgtagaggagatggaggagggggttgGACCGAGGACAAATGGAAAGGCAAACAAGATAGATAAAGACTTCTCTGACCTCCTGCCTAGGGGCAAGGAGGAGCTGAGGGAGGCGACGGCCTTGCTGACAGCCCAGCAGACGTCCTTGGAGATCATCGTCAACATGTGCTGCTCTGATGACCCGTCAGACGATGAGTGGGAGGAGGCGTCGAGCAGCGACGAGAGTGAGATGTGTCCTGACGGCCTCTCTGAAGGGAACACCAGCCTCCTGTCCCCACTGTGTCTGTCTGCTGAGGTCCACGCGGCTCTGATCAACCACAACATCCCAGAGAAGGTTCTCAAGAAGACCCAGTTCCCCAGCAGCGAGGCGATGGACGTATGTCGTCATAATCCCACCTGGAAAATGTTGATGAAAAAGATGCATCGGGTGCAGTACAGGGCCCTGACGTGCCTTCACAACATGCTGTCTACTATGGACGCTGAGTCCCTAGGGGGAGCAGCCGCTCTTCAGGCTGTCGCACAACACCTGTCCACGCTGGTCTTCAGTCCTCCAGAGATCCCTAAGGAGGAGGAATTCCTTGAGGCAGTTACCAGTGCCATGCGATCCCTCTTACAGATCATAGCCTATATGAAAATCCCACAGtgTATGACACCCCAGCAGCTGATGAGCCTGAGCGAGGCGGCGACCTGCTGTGACGTGGTCAGTGTGAGAGTGAACGCTCTGGCCATCCTAGGCATCACAGGAAGCACACTGGCTAAAGAGAAGAGGACAGCTGAAACTCTGCAGATGATTGGCAATGCCTTACTCCAAGTTGCTACAAAGGATGCCGACCTTGTGGTTTGTGGAGAGGCCCTGGATGCTCTGTTTGATGTTTTTGCGGATGGAGACGAGGCAGAGAGAGCAGCTAAAAACATCAACTTACTGGCGGCTCTGAAGGCACTTCAACCTGTCTTCAAGGCTAAGATTCGTAAAGAGGGGAAGGGAAAGTACAGCCCTGAGCAGCTGTGTGTGCTGGACAACATCAAAGTCAACCTAAGAAGGTTTATTGGCTACCTGGAGACTGTGGTAAAAAAATGACAGCGGCCTGACTACGACAccatctgactgactggctgacataAGATGAAATGACTCATAATTTACAATACAATGGACCCAGAGTTGCCCATAGAGCCTTTGGACAGAACAGAGGGAATGGGGTTGAGGGGAATTCCCTAATAGACCCTCATTAAAGGGACagttcattccaaaatcattgttTTTGAGTGAACTATTCCTTTAACATCTATATAACTGATTTTGATGTTGGGTATCTTTTTGTTTTAATGTTCTGACTGAAATGCTTAACTATTTTCCTTGGTAGGTGAGTGTTTACATAATTATTTGTCCAAATTTTTTTTTAACGTGCGTTATTTTGAATTACTGTTGCAGTACATAGTGACGCATTGTTTTACTTTATGTATAAAAGTACATTTCAATGTGCTGTATTTTAAAGGTATTGACAGAACATTGTATGGTTTATTTTACACATCTTTATCAACCAACTCTCACGTCACACACTCATAGTGTAGCCCTCCGTGTTAGGAATGACCAGTTGTAGTATTCATGTGCTTCTCACCCAAGAATCCGCTATCTGACCCCATTTAATGactctgtcatgttgtgctgtCATGGAAAATGAGATGGACAGGCCTAGTGTTTCCTGACCTTTGGGTTGCTATGGCTCTACTGCCTGCAGGCATTTACCATTGTATGACAAGGCCATCTGTTTACCCCCCAGTGTCTACTGACCATGTGAGATGTCATGAATAAAGCAGAACACACCATCCA

Function

GO: NA

KEGG:

id description
K24812 HEATR3; HEAT repeat-containing protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU617812 lncRNA upstream 15307 75443690 ~ 75444352 (+) True G545618
TU617672 lncRNA upstream 122641 75335010 ~ 75337018 (+) True G545492
TU617686 lncRNA upstream 202431 75257002 ~ 75257228 (+) True G545506
TU617684 lncRNA upstream 204079 75255374 ~ 75255580 (+) True G545504
TU617674 lncRNA upstream 213416 75245816 ~ 75246243 (+) True G545494
TU617833 lncRNA downstream 19364 75488005 ~ 75498286 (+) True tent4b
TU617884 lncRNA downstream 128524 75597165 ~ 75597427 (+) True G545684
TU617926 lncRNA downstream 189654 75658295 ~ 75658516 (+) True G545725
TU617944 lncRNA downstream 218106 75686747 ~ 75689195 (+) True G545742
TU617917 lncRNA downstream 234849 75703490 ~ 75728642 (+) True G545716
XM_021607691.2 mRNA upstream 281 75456602 ~ 75459378 (+) False LOC110526593
XM_021607690.2 mRNA upstream 281 75456612 ~ 75459378 (+) False LOC110526593
XM_036980976.1 mRNA upstream 281 75456819 ~ 75459378 (+) True LOC110526593
XM_021607689.2 mRNA upstream 3146 75454987 ~ 75456513 (+) True LOC110526592
XM_021607687.2 mRNA upstream 50984 75393797 ~ 75408675 (+) False LOC110526588
XM_021607692.2 mRNA downstream 5402 75474043 ~ 75496218 (+) False tent4b
XM_021607693.2 mRNA downstream 30055 75498696 ~ 75572903 (+) False LOC110526596
XM_021607694.2 mRNA downstream 30055 75498696 ~ 75572903 (+) False LOC110526596
XM_021607696.2 mRNA downstream 30055 75498696 ~ 75572903 (+) False LOC110526596
XM_021607697.2 mRNA downstream 76269 75544910 ~ 75572903 (+) True LOC110526596
TU617795 other upstream 36907 75421861 ~ 75422752 (+) True G545601
TU617662 other upstream 221495 75237800 ~ 75238164 (+) True G545485
TU616612 other upstream 1171521 74287778 ~ 74288138 (+) True G544565
TU615384 other upstream 2071972 73372805 ~ 73387687 (+) False LOC100136290
TU614905 other upstream 2314312 73038621 ~ 73145347 (+) True LOC110526543
TU618729 other downstream 459587 75928228 ~ 75970674 (+) True G546464
TU619876 other downstream 1418791 76887432 ~ 77036313 (+) False LOC110526968
TU620306 other downstream 1809351 77277992 ~ 77279354 (+) True G547884
TU620456 other downstream 2043968 77512609 ~ 77523423 (+) True G548000
TU620974 other downstream 2345734 77814375 ~ 77817061 (+) True LOC110526614

Expression Profile