RNA id: XM_021607692.2


Basic Information

Item Value
RNA id XM_021607692.2
length 3866
RNA type mRNA
GC content 0.46
exon number 12
gene id tent4b
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 75474043 ~ 75498286 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAGTGTCCGCCATTGAGGACCCACAATCAGAAGGAAAGGGTCAGAAATCGCTTCGATAGGCAATGGTTGCACGTTTCCTTAATTCTTGAATCCAAACTTTGACAACATTCTTTCATTAAACACGACGCCTACTGTCTAATAATAATAGTATCTAATAGTCGTTTTAATTCATGGATAGCAGATTTAGATATTTTATAGCAATTTGAAGTAACCTTCATATCTAACGTTAGTCAGCTGTAAAGCTTAAGAGtgaggttagctagctagctacctggctagCTTTAGCTACACGAACTGAGCCTTGCTCTGGGGCAGTGTGCCTGCACTGTCGTTTGATGGATCCAAGAATCGCTTGGTTTCAGCCAGAACAACGTGGGCCAGCCAACAGCCTGTGGATGCAGATTTGGGAAACAACACAAGGTTTGGGGAATCTGTACTTCAATAACAACTGTAACACGGGTAGTTTGTCTAGCACGTCAAGCCTCAGTCAGAAATCGAACATCAACGGGACATTGGGTAACGTAATATCGAGCAAGAACGGAGCTGTCACTAACAGCGAACCCAGGTACAAGGGAATGTCCAACTCAACGAAAGACAGAGATGTAGTCGAACAACGAGACTTTATTCCGTTGGAAGCTAATAACAACCACAACAACCGTTCATCGCTGGGGAGGGGCAGCGGAGGGGTGCAAGTGGGCTCTGGGGTCTCAGGACACCCCAACAAAAGGAAAAGAGACAACAAGGCTAGCACCTATGGATTCAACAGTAGCCTCGAGACCGGAGGCTGTGGTTACACGGGAACACCATGGAAAGTCAAGAACTACTCTGAAGGAATCTTGGGGCTCCATGAGGAGATCAATGACTTCTACAAGCACATGTCTCCtcgggaagaggaggagaggatgaggatggaGGTGGTGGACAGGATCGAGAGGGTCATCAAAGACCTGTGGCCCACTGCTGACGTTCAAGTGTTTGGGAGTTTCAGCACGGGCCTCTATCTGCCAACCAGTGACATCGATCTGGTGGTGTTTGGGAACTGGGAAAACCTGCCCCTTTGGACCCTGGAAGAGGCCCTGCGGAAGAAAAACGTGACTGACGAGAACTCCATCAAAGTGCTGGACAAGGCCacgGTACCCATCATCAAGCTGACAGACTTCCGCACAGAGGTGAAGGTGGACATCAGCTTCAATGTGAAGAACGGAGTTAAAGCTGCCCTTCTCATCAAAGACTACAAAAAGAAATACCCAGTGCTTCCAAAGTTGGTTCTGGTGCTGAAGCAGTTCCTGCTCCAGAGGGATCTGAATGAGGTTTTCACTGGAGGGATCGGCTCCTACAGCCTTTTCCTTATGGCTGTCAGCTTCCTGCAGCTTCACTACAGAGAAGATGCCTGTAGCCCTAATGCCAACGTGGGCGTTCTCCTTATAGAGTTCTTTGAGCTCTATGGGCGCCACTTCAACTACCTGAAGACGGGCATCCGAATCAAAGATGGCGGCAGCTATGTGGCCAAAGACGAGGTTCAGAAGAGCACTGACCTCTACAGGCCCTCCATGCTCTTCATTGAGGACCCCCTAGCACCAGATAACGACGTTGGCCGCAGCTCATACGGTGTGTTGCAGGTGAAGCAGGCCTTTGACTATGCTTACATAGTGCTCAACCACGCCGTATCGCCCATCGCCAAGTACTACCCAAACAACGAGTCTGAGAGTATACTTGGCAGAATAATCCGGGTGACCCAGGAAGTGGCTGAATACAGGGACTGGATCACCAAGCTCTGGGGACCACAGTCTCAGAATGAACCTGCCCTGAATGGAAATGATGTCACACTGTTAGTGAAGCCTCAGCAGCTGGATGAGTGCAACAACAACCTGACGGAGGAGGTGACTGCATCTCACAGCAAGACCTCCTCCAACTCCTCATTAGTGTCATCCTCATCCTCCACGGTATCCAGTTCCAGCGACGTTGATTCTGACGGGACGCCCTGTAAGACAGTGAAGCAACAGCCTGGGCGGGGCTCCAGCGCCCACAGAGAATCCTCAGGTGGCGTGACCAATCACAGAACACAGAGGCACACCACCAGCACTCCTACTGACAAGGGGGGCAAGGCCAGGTTGATCCGCTCGTCCAGTAAAAACACCCACCACCTCCAGCAGAACTCGTCCTCATCCAACATCAAGAGCCACCCGAGCAGCAAGCCACACTACCAGGGCAACTTCAAGAAGAGGAAACCTCAGCAGCACTCAGAGGCCCAGGACCTCTGCAGATAGGGCTGTCTGGGTCTGCTCTgcaacagactgacagactgactgctgccagactccacactgactgagGAGTAGTATTAAGGATCTTCCTTCTCTCAAGCGACACGCATCTTTTTATAGCTGAAAAATATCCCAAAAAAAGAAATAGGAAATGCTGGGGCTTAGTTCTTGAAAGAAATGCTAATTTTCTtccttgacattaacctgttctACAGTGGAGCTACACACCACATCCAGTACCTACAAATCTTGCCTTTTACCATAGCGCCATCTGGTGTTTTGGAGGAATAAGTGTCTGGAAAGTAATGTAGATTTGGACAAGCAATACCTGGAACTTGGCTGGCGAACGAACTTCAGCaagaaaagtttaaaaaaaagaataaaatacacaaaaacaaaaaTTTACAAAATGTTATATTGAAGAAAGAAGGGGGGGGAAAGTACACAGATTGAAAGACTAAACCCCAAAATGCAATCTGTAAGTGGAGACAATTTTTTTTGATGGGCGGTTATTTTTTGGTTGTAATCAGATTATACAAAGATTTGTACAAAAAAAGACAAACACGCAGAAATGTTTTGAGaaaaaattatcacaagaatggTTTGACTTTTTACAGGATACTACGGATTCAAGGCAAATATATATGTGCACATTTGCCTGCTAATCTGAGTAGTGGCAGGTTAGGGTTTCATTGCCAACATAAATCATCAGCATTCTATTTCTACTTGGCTGCTCTCTCAATGTGTTGACAGGCTTCTTTCCAAATTATACCCATTTCTCAAattagtacactactttcactaaatagggaatagggtgccatttgggatgcactaaCAGTGTTAGCAGTATGCCTTAGTCAGGTAACGTGCACACACAGCCCTATAGATTactggctggctggggacacatcactcattcatacacACAGCCCTATACAACAACAGTGACGGTTTTTAGAGGTTCTCCCAGACTCATAGAATTACAGTTAGAGGACATAATGATTTTAGAAAGATTCTCCACTTGAAATATGTCTAAGATCCATAGGTGTGGGAGGTATTATTTTCCCTTTGGTAATTTACCCATTATGAAAATGTGTATTTGTTCATGTATTTTTCTATTAATGATATGAAAATATAGTACTATACATGTTATACGTATTAACAGGAGAGACCATATTCTTGTATCTTATATTTGGATAGTGGGATATTGGGGAAGTATAATTGGTCAGGTACAGTACCAATGTTGCTGTTTTGTGGCATTTTGTTTTAATATGTGGCTGGTCTACTTTAAAAGGGAGCCGAGTTTTTGGTCAGAATATAATGCAAACAAACACCTCTTTGTTAATGTGTCAACAACCCCTCGCTGAAATGTCTGGTATGTCAACATCTGATTGCAGTTCCACAACTAACCTGTAGATGGTGGCATTACTCGACTCTTCACAGCTGGCACCTTCATACTGCATTTAGACCTTTTCTTCAGTGTCAGTCAAtgtagtcagaccccttgactttatccacattgttacattacagcctgattctaaaattaattaaattgccccccccccccccctcaatctacacacaataccccaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU617812 lncRNA upstream 29691 75443690 ~ 75444352 (+) True G545618
TU617672 lncRNA upstream 137025 75335010 ~ 75337018 (+) True G545492
TU617686 lncRNA upstream 216815 75257002 ~ 75257228 (+) True G545506
TU617684 lncRNA upstream 218463 75255374 ~ 75255580 (+) True G545504
TU617674 lncRNA upstream 227800 75245816 ~ 75246243 (+) True G545494
TU617884 lncRNA downstream 100947 75597165 ~ 75597427 (+) True G545684
TU617926 lncRNA downstream 162077 75658295 ~ 75658516 (+) True G545725
TU617944 lncRNA downstream 190529 75686747 ~ 75689195 (+) True G545742
TU617917 lncRNA downstream 207272 75703490 ~ 75728642 (+) True G545716
TU617960 lncRNA downstream 237428 75733646 ~ 75734326 (+) True G545757
XM_021607688.2 mRNA upstream 5402 75459659 ~ 75468641 (+) True heatr3
XM_021607691.2 mRNA upstream 14665 75456602 ~ 75459378 (+) False LOC110526593
XM_021607690.2 mRNA upstream 14665 75456612 ~ 75459378 (+) False LOC110526593
XM_036980976.1 mRNA upstream 14665 75456819 ~ 75459378 (+) True LOC110526593
XM_021607689.2 mRNA upstream 17530 75454987 ~ 75456513 (+) True LOC110526592
XM_021607693.2 mRNA downstream 2478 75498696 ~ 75572903 (+) False LOC110526596
XM_021607694.2 mRNA downstream 2478 75498696 ~ 75572903 (+) False LOC110526596
XM_021607696.2 mRNA downstream 2478 75498696 ~ 75572903 (+) False LOC110526596
XM_021607697.2 mRNA downstream 48692 75544910 ~ 75572903 (+) True LOC110526596
XM_036980977.1 mRNA downstream 168151 75664369 ~ 75702602 (+) True LOC110526967
TU617795 other upstream 51291 75421861 ~ 75422752 (+) True G545601
TU617662 other upstream 235879 75237800 ~ 75238164 (+) True G545485
TU616612 other upstream 1185905 74287778 ~ 74288138 (+) True G544565
TU615384 other upstream 2086356 73372805 ~ 73387687 (+) False LOC100136290
TU614905 other upstream 2328696 73038621 ~ 73145347 (+) True LOC110526543
TU618729 other downstream 432010 75928228 ~ 75970674 (+) True G546464
TU619876 other downstream 1391214 76887432 ~ 77036313 (+) False LOC110526968
TU620306 other downstream 1781774 77277992 ~ 77279354 (+) True G547884
TU620456 other downstream 2016391 77512609 ~ 77523423 (+) True G548000
TU620974 other downstream 2318157 77814375 ~ 77817061 (+) True LOC110526614

Expression Profile