RNA id: XM_021607694.2


Basic Information

Item Value
RNA id XM_021607694.2
length 5873
RNA type mRNA
GC content 0.49
exon number 27
gene id LOC110526596
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 75498696 ~ 75572903 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTCACGCACCACAGAAGACAAAGTGCAATGCTGCTATGTAGACTGGCAGTAGATGTCCCTCACTACCACGATGAGCTGTATTTCACACAGTGAGACGCATTTGATTGATATTCCCCCAGTTGTTACATAATTGTGCAACTCATAAGCGCCTAACAATCAGTTGATCCATGAGAGGGGGAATGGCTGGGGCAAAACCGATATAACTATATTCTGTTCGCTCTTCATGTGGGTGTGAGTACACCGTAGCATCTTGATGAACATCTTTTCCGCATTCAAAAGCAAGCCCTCAAGAGCGCACGGTGACCCAGAGAACATTTCGCTCGCAGTGGAATTACAATTTAACTGCAGTGGACAAGAGAAGAATTCGTCCACTACGAAGTCGTCTCTAGAATACGTTCATTCTATATTTCGAGTCTACTGGTATACGTTTTCCTACAAACAGGCCTCTGACAGCTCCAGTGGGTGGAGCTACATTGGGCCCCTCTCTCTACCCGCTCAGCACTGATGGGACAGAATCCTGAATCCTGGAAGAATCCTTGACGacccctctttccttctccacCCTCCCAGGCTccaccctctttctcctcctctcctctttccttagACTCTCCTCCTCCCCCGGTCTCTTCTCTCAGCGCTGGGATCATTACTCAACCCCACTGAAGAATGGACCACAGTAGCTGGCAAGGATGAACTGGGTCTGCCTGCCAATGCAGAAAGGGAGataagagggagaaagagagagcaagttCAAAACCTGTGAGTGAAAGAAGAGAGGAACATATTAAAAATGCCCATGAGGGATAACATCGACAACTGCACTTGAGTAGTATGAGCTAGAAAGCCTCAGCAAACCTGCCCACCTGGATGTGTGgatctgtagacacacacacacacacacgtctgtctCAGTCACAGCAGAAGACGGCTCCTACCCTGCCCTACCCTGTGGGGTGGTGTTTTCAGCATTATTCCCTGCCTACCATACCTGTGtaaggagtggtggagaggaaaTTTAGCAACTCTTAGAGGACAGTGGAAGCTGACAAAAATGCTTCTATGTTAAAACCAGCAGCCCGTAACCTTTTATCAGGGTTTTAGTAGTGAACAGGTCACCACCACCATGCCGGCTAAAGGGAAGTACCTGTTAAATGACCAGGAGCTGAAACATGAGGCCCTGTACAGGAAGTTCTCCTGTATCAGCCAGTACCAGCCTCTAGTGCTGCTACTGGGCCTCTCCATGCTGTCCTGTGGAGTCCTCATCATCCTCTTCTTCGCCCTGCACCTGAGTGCGGAGGAGCACTGTGCATTTGTCAGCGTGGTGAGCTGCAGCCTGTGTGTGTTCCTGGCTGTGTTTGTGCTGGTGTGTACAGAGACCCTGACCCAGCGCTGGAGGAGACTGCTGGCTCTGGTGGTCTGGGCCACTCACCTCACCATGGGATTCACCTTCATCTTCAGCGGACCCCTCATCCTGCCCTGGGACCAGGTTCCCTTCTTCCTGTTCATCATCTTCACAGTGTACACCATGCTGCCTTTCCAGATGTGCTATGCTGTGGTGCTCAGTGTGATCTCCTCACTCTCTCACATCATGGTCCTCACTCTACGCCTCACTGTCTTCAACACCCAAGATCCCAGCCCCTTTCTGGCCAATCAGCTGCTGTCCAATGCGGTGGTGTTTCTGTGTGGCAGTGTGGTGGGGGCCTTCCATAAGGTCCTGATGGAGAGAGCACTAAGACAGACCTTCCAGGATACACTCAGATGTCTGGGCATCCGCATGAAGCTGGAGATAGAAAAGAGACAACAGgagAACCTGCTGCAGTCTGTGCTGCCGGTCTACATCTCCATGAAGATGAAGCTGGCCATCATGGAGCGTCTGCAAGACTGCAAGGACAAAGAAGAGCGGCAACGACTTGTCAAAGACAACAACTTCCACAGTCTCTACGTCAAGAGACACGAGAACGTCAGTATTCTGTATGCTGACATTGTGGGCTTCACCCGATTGGCCAGCGACTGCTCTCCGAAGGAGCTGGTCATCATGCTCAACGAGCTGTTTGGGAAGTTTGACCAGATTGCAAAGGAGAACGAGTGCATGAGAATCAAGATTTTGGGAGACTGCTACTACTGTGTGTCtggcctgcctgtctccctgcccatGCATGCCAAGAACTGTGTGAAGATGGGTCTGGACATGTGTGAGGCCATCAAACGAGTGCGCGAGGCCACAGGTGTGGACATCAACATGAGAGTGGGCGTGCACTCCGGCAACGTGCTCTGCGGTGTGATTGGCCTCCGCAAGTGGCAGTTTGACGTTTGGTCACATGACGTCACCCTGGCCAATTATATGGAGTCTGGAGGCTTACCTGGGCGTGTCCACATCACTGAGGCCACCCTGAAGCACCTGAACAAGGCCtatgaggtggaggaggggaacgGCGGGCTAAGAGATGCCTACCTGAAGGAGCTCAACATACAGACATACCTTGTCATCGATCCTCGGTCTAAGAACCAGGCTCTGAACAGCCACAGCATGCCCAAGCCGCGTGTGAATGACGGGCTGAAGATGCGGGCGTCAGTGAGAATGACCCGTTACCTGGAGTCCTGGGGCGCCGTCAAACCCTTCGCCCACCTACAGAGCAGAGAGGGGTACACCCAAGACACCATGGTCAATGGAAAATCACGCTGCAAGGACATCCCTCTGCGCACAGCTCACTCGAAGATCACTGAGAGCTTTGATGAGTCTGTAGAGGAGCCCTTCTCCTCGCCCGCCCCTCTGCTCAGCACCTATAAGAACAAGTCCCAGAAGAGCAAGTTTGATGAGGAGCTGCACAATGAGATGACCACCACCATCGATGAGCTCAGCAGCAAGCAGTGGGTGAAGTCTGAGGAGATTAGCAGTCTGGCTGTGTGGTTCCCTAAGAAAGAGCTGGAGAAACAGTACCGAGCCATTGATCTGCCCATGTTCAAGCACTACATCGGCTGTGCCACCTTCATCTTCTTCTGCATCTTTGTGGTTCAGATGTTTGTGACAAAAGATTCCAAAATGTTGGGAATGTCGTTTGGAGTGCTGGCCTGTGTCCTCCTGTTGACCCTGGGCATCTGTTTTGCAGGTCACCTGCAGCGCTTGTTTCCGGAGAAGTTGTCGTCCTGCCAGTGGCTGCCTGCTGTGTCCGAGGCAGTGGTCAAGAGGCCGTGTGTGCGCCTCCCTCTGGTCACTATCACCACTGCGGTCATCATCATCCTAGCAGTCTTCAACCTGTGCTTCATCCAGACAAAGTCACTGTGTGATATCAATGGTAACCCTGATCTGATTCCATCTGACAACTCCAGTGAGCAGCATCCAGGCAGCCTGTTCTACCTGCCGTACTCTGTGTTCAGCTGTATCCTGGCTCTCATAGCTTGTGGAGTGTTCCTGAGGGTGAGCTTTGAGCTTAAAGTGGTCTTCCTCACCCTGGCCTCCACAGCCTACTACATCATCATCCTCAGCGCCAAGGCTGGTCTCTTCAGCTGCTATGGACAAATGCTTTACAACCAACTCAATGAAAACAGAACTGAGGACTCTGGGACCATCCTGAGAGCATTGGGGCTGGTCAAACACCCTAAGGTGATGAGCTGCATATACATCACCTTGTTCCTGGTCACCATGCTCATCATCTCATTACAGAATGAGTCATGCTTCCGCCAGGACTTCCTTCTGAAGAACAAGAACCGTACGGAGCAGGATGAGATCGAGACCAGGGAGAACCTGAACCGCCTGCTCCTGGAGAACGTGCTGCCGGCCCATGTCGCTGCGCTGTTTGTTGGGGAGAATAAAAAGAACGAGGACCTGTACTACAAGTCATATGACTGTGTGTGCGTGATGTTCGCCTCGGTACCGGACTTCAAAGAGTTCTACACGGAGTGTGACATCAACAAGGAAGGTCTGGAGTGTCTGAGGCTCCTCAACGAGATCATAGCAGATTTTGATGAGCTGCTGTCCAAGCCCAAGTTCAGTGGAGTTGAGAAGATCAAGACCATCGGAAGCACTTATATGGCAGCCGCAGGGCTGAGTGGCACCCCAGGACAGGAGAATAACCAGGACCGAGATAGGCAGCAGGCACAGATGGGGAACATGGTAGAGTTTGCCATTGCCCTCATTGGCAAGCTGGATGGCATCAACAGACACTCCTTCAACAGTTTTAGACTGCGTGTGGGCATTAACCATGGGCCTGTTATTGCTGGGGTGATTGGAGCCAGAAAACCTCAGTATGACATCTGGGGCAACACCGTCAACGTGGCCAGTAGGATGGAGAGCACTGGAGAGCTGGGCAAGATTCAGGTTACAGAGGAGACGTCGGACGTGCTCCAGAAGCTGGGCTACTCCTGTGAATGCCGAGGCCTCATCAACGTCAAGGGAAAAGGCGAGCTGACAACCTTCTTTGTGTGTACGGACATGAGCAAGCAGCAGGGAATGGGCCTGAGCTGAGGTCTACGGTGAGCacactactgtgtgtgtggacTCTGGGCCTGGTAGCGCATACGTGTGCTGGGTCGGTTACAGGACACAGTCTAGCATTCAGCACAGACTAATTACATGAACGCACATAAGTTAACATGCTTAGACTAAACCTACTGGAGCACACAAATATAATCCATCCCAGTGCTTCAGTCAGCGACGATCCTGACCGGACCAGATCAAGACTTGAAGACGTGGTCCTAGAGGTTATATTTTGGATTATTCTTCATTGGAAATAAATGCTTAGTGCTGCTgattttttttttgagagagagagatatagttcTAATGTATGCATTCAATTAGACTGACATGGAGGTTACGTCAAGCACTGGCCGTCGTCATACTGGATTCTATCACCTAATACTCCTAGAACCTTTCTGGAATCATGAGATGCACCAAAAACATCTTCAGTCTGCTCAAAACTGAGCTGTTTATCAAGCAAATGGTGACTAAAACAATGGAGTGAGTGCTGCTGCATGTGGAGTGACAGTACATACTCGCTGCCATGGTTTTCTAGACCTTAAAAGGTAGACTAAGCAAAATGACATTGTCATGAGCTGCAAGACTTGTGCACGGGTTCCCTTCACGCTGTTACAGCGTGGTAGCAACAGAACCAAAACAGCGGAGAAGTTTAAACTTGCGCTTTAACGCGCGGttgtggaaattgacccactatgctgtttactttggtcatatcgctgagtctacctttaacagTTTGTTTAGTGAACAGTCACCCTCTAATCATTTCTTATTTTTCTGTTTGGTTTCTACGACCATGGGACTAAATGTAAATATCGAAGCCAAATATCCTGCCTACTGAAACAGCTGAGACCGATGGACAGTTTATATGGTATGATGTCTTTCAAAAATAAATGATGAATAAGTgctatatgcacagtaaaacattctGGTCACTAATGAAAAGCTTAATTTGACTGAAACAAAATGATCCTCAGTGCTGTGCAGTATGCTTCAGCCATATTAGTTGTAAAGGTATAGATTGCATTGACTAGCCAACAAACTGCAGTGTCTTATATGCTGCCTGTGAATCGCTGGTCAAACTAATATTCTATTTGGTGTCCTTTGTGTACCTAAACACACAGGTTAGAATAATACTATGACAATGCCCTTTTAGTATAAGCGCCATTtagaaaagaccacctgaaatctCAGCctgtttggtgggatggagttttggccagGCAGTAAATTAGTAAAGACCgataagagttccaaacctctcggCCAATAACAGTTTGTTTTCAGTTCCCCAATCACACCACTGACAGTCCTAGCAAAGAGCCAATTTAGCTAAGAAGCTGTTTGAGCATTGTTTAATTAAACAATCACAATAAAATACTTAACTGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU617833 lncRNA upstream 410 75488005 ~ 75498286 (+) True tent4b
TU617794 lncRNA upstream 8645 75419049 ~ 75490051 (+) True G545600
TU617812 lncRNA upstream 54344 75443690 ~ 75444352 (+) True G545618
TU617672 lncRNA upstream 161678 75335010 ~ 75337018 (+) True G545492
TU617686 lncRNA upstream 241468 75257002 ~ 75257228 (+) True G545506
TU617884 lncRNA downstream 24262 75597165 ~ 75597427 (+) True G545684
TU617926 lncRNA downstream 85392 75658295 ~ 75658516 (+) True G545725
TU617944 lncRNA downstream 113844 75686747 ~ 75689195 (+) True G545742
TU617917 lncRNA downstream 130587 75703490 ~ 75728642 (+) True G545716
TU617960 lncRNA downstream 160743 75733646 ~ 75734326 (+) True G545757
XM_021607692.2 mRNA upstream 2478 75474043 ~ 75496218 (+) False tent4b
XM_021607688.2 mRNA upstream 30055 75459659 ~ 75468641 (+) True heatr3
XM_021607691.2 mRNA upstream 39318 75456602 ~ 75459378 (+) False LOC110526593
XM_036980977.1 mRNA downstream 91466 75664369 ~ 75702602 (+) True LOC110526967
XM_036979155.1 mRNA downstream 180034 75752937 ~ 75765291 (+) False nod2
XM_036979154.1 mRNA downstream 180038 75752941 ~ 75765291 (+) False nod2
XM_036979156.1 mRNA downstream 180038 75752941 ~ 75765291 (+) False nod2
NM_001201555.1 mRNA downstream 180074 75752977 ~ 75764904 (+) True nod2
TU617795 other upstream 75944 75421861 ~ 75422752 (+) True G545601
TU617662 other upstream 260532 75237800 ~ 75238164 (+) True G545485
TU616612 other upstream 1210558 74287778 ~ 74288138 (+) True G544565
TU615384 other upstream 2111009 73372805 ~ 73387687 (+) False LOC100136290
TU614905 other upstream 2353349 73038621 ~ 73145347 (+) True LOC110526543
TU618729 other downstream 355325 75928228 ~ 75970674 (+) True G546464
TU619876 other downstream 1314529 76887432 ~ 77036313 (+) False LOC110526968
TU620306 other downstream 1705089 77277992 ~ 77279354 (+) True G547884
TU620456 other downstream 1939706 77512609 ~ 77523423 (+) True G548000
TU620974 other downstream 2241472 77814375 ~ 77817061 (+) True LOC110526614

Expression Profile