RNA id: XM_036979156.1


Basic Information

Item Value
RNA id XM_036979156.1
length 3996
RNA type mRNA
GC content 0.51
exon number 13
gene id nod2
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 75752937 ~ 75765291 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCATCCACTACTCCTACCCCCAAACTGCGCGTTCTTTGATATCTACATTGCGCGCGAGGTTTATAGAAACTCAACATTTTCGCTTTGTCACATTTACgaactgatatatatatatattttttgtgtgcaaaataCGTGGGGCTCTAACAGACCTATTGGAAGGGACATTAATCATTGGAATAAAGAGCCAGTATTTAAACAAATTCTAAACGTGACATGTCACTTTCACTTTCCCTGTAAATAAAAGGTACATGCACATGTGGTTTCTCATAATTCAATAGCGCTCAATAATACAATACTTTTAGAGAACTTGCAAATGCTTCACCTTGAAATAATAAGTTAATATGTTTATCGAATCGCTATTAAATGGTTTAGGAAAACGGCATCATTTACAGCGGGCAATTTAGCGAAATGAGGAATGACGAATTgtggaatgaggaagagagatagGAGTTGACGATTCTGCCTGTACCATTTGCGTGGACCATTCTGTATCGCACTCGAGTAGACAGATGATGATCTCGAAGAAGTCAGACAAGTCTCCCGCTGAAACattattttcctgctgtagcaaactggctcaaattaagatcctacatctgtatgagtGCCCGGCAGCTGGTCCTGAGGCAGAGAGCAGAGCTGCTGAATGCCCTGTGCTGTGGTGGCTCTTCTGAGGGTCTGGAGAGTGTATTGGACCTACTCCTGTCCTGGGGCATGCTGTTCTGGGAGGACTACCAGAATGTACTGGTACCATGCCGTGGTCTGTGTGCCAACACAAGGGTGCTACTAGATCTGGTGTACACCAAGGGAGATGAGACCTGTCGACTGCTCCTGGCTGCTTTCAAACAGGTCCTCCCTGAGGCCCAAAGAGCTGGCCTCTCTTTTGGAAACTGTCGTACTGCCGATCTAGAAAATACAAGAGATGATACAAGAGAACTACATGGTACAGCTATCCAGACcctccagacagacaggcctgaTCTGGTGAGGAGGCTAAGGGACCATATTGAAGGAGCTCTGGAGGTCCTGCTACATACGGGCAGCTTTACACCATCTGATTGCAATGAAGTGCAGCTACCTGTGTACACCCCCTCACAACAGGCAAGGCATCTACTGGACCAGGTCAGATCAAAGGGGGAGCCTGCAGCAAAGGTCCTATTGCAATACTTTCAGCAAACAGAGGACCATCCCTCACCATCTAACCAAGAGGCTCCTCCCAAAGAGTGCTTGTCCTATCAGAAGAAGCTGCGCAGCACTGTGTCGGCCCAGTCACATTTCCTCGGAACGTATGGAGGAACCAGCAGTCTGTCTCTAGAAGACATCTACACAGAGGGTCAGCTGGAGCTTGCCCAGGGTGACAGTGAGGCCCAGCCCCAGACTGGTGCTCTGGGGCTGGAGGACGTGGTGGGCCTGGTGGGCACCCTGAACCAGGAGGCTGACACTGTGCTAGTCTCTGGGGAGGCAGGCAGTGGGAAGAGCACCCTTCTCCAGAGGCTGCACCTCCTTTGGGCCAGGGGGGCGGCTCTACATGAtttcttcctcctcttttccttcaGCTGCCGCAGGCTGAGCTCGGAACAGAGGGAGCTGTCTCTCAGAGAGCTGCTGTTCCTGCACTGCTGCTGGCCGGACGGGGACCAGGACCGAATCTTTCAGTTCATCCTGGACCATCCGCACCTCATACTCTTCACCTTCGACGGCCTGGACGAGCTCATGCAGAGCTTCTCAGACTCAGAGCAGAGGCACTGCTGCCCCACCCAGTGTGCCCCAGTCCCCACCCTGCTCTTCAACTTGCTGCAGGGATCCCTCATGAAGGGGGTGAGGAAGGTGGTGACCAGCCGGCCAGAGGCAGTGGGTCCCACCCTGAAGCGGTACCTTCGCAAGGAAGTCCTCTTGAAAGGCTTCTCGCCCGGCGGGATCGACTGCTTCGTGAGGAAGTATCATCGCGACCCGACGGTGGCCACCAGGGTCCTGGAGTGTCTACGAAGCAACACAGCTCTACTGGGCCTGTGTCACATCCCGGTTTTCTGCTGGATTGTGTCCAAGTGTTATAAGGAGCTGCTGGgctgtggagagggagagggcagtcCCCAGACCATCACAGACGTTTACCTCATGATCCTGCAGCACTTCTTCCAGCGCCGGGCCTCTCAGAGGAACACGATGGGGATAGGATGGGTGCAGGAGCACCAGGATACTGCCCTGCATCTGGGGCAGCTAGCCATGGAGGGCCTGGGGGCCTCTTGTTACATCTTCACAGGCACAGAGCTACAGAAGTGTGGGGTGACCGAGGAAGATATCTGCATGGGGTTCCTCATCCGTAGTAAagacctctcctcctccactaactGCAAACACTACGAGTTCCTGCACATTACCATGCAGTGCTTCTTTGCTGCTCTCTACATTGTCCTGAACAATAACTCGGACCGCTCCACCATCCCTAAGCTCTTTCAGCTGCAGGACAGGCAGCAACAGCCTGGCTTTCACAGGGTGTGTCTGGGGCACTGCTTGACCCAACAAGAAGGGGCCTTGAAGGAGGCCAATAAGGCAGCAGAGACACCCAACCTCCAGATAACAGCCACTTTTGTGTCTGGGCTCTTGGCTCAGCGCCACCGAAGCCTGCTGCTCCTCTCCTGCCCTGGGCCCACTCTGGACAGGAAGTCCAAGCAGGTGGTGACGTGCCTGTCCAAAGGCATACAGAAGCACTTTAAATCCATCCCTCGGCCCgtggagggggagaagaagagcaTGCACGCCATGCCGGGCTTCGTGTGGCTCATCAAGTGCATCCATGAGATGCAGGACAGCAGGATCGCCAGAGACACTATGGCTAAGCTAGAGGTGGAACACCTGAAGCTGACCTATTGTAACATAGGCCCTGGGGAGTGTACTGCACTGGCCTACGTGCTCCAGCACCTTAGGAACCCTGTGGGGCTTCAGCTAGACTACAACTATGTAGGAGACGTTGGCGTGGAGCAGCTGCTGCCTTGCCTGCATGTCTGCCACTCTGTATACCTGAGACACAATAACATATCAGATGAGGGAATTCGTAAATTGATTGAAAAAGGCATCCAGTGTGAGCGCTTTCAGAAGATTGCGCTCTTCAACAACAAGCTAACTGATGCCTGCACAGAGTGCTTCGCTCACCTCCTGAAGATGAAACAGAATTTTCTCTCTCTAAGGCTGGGAAACAATAACATCACAGCAGCAGGGGCAGGGCAACTGGCGGAGGGACTGAGGTTCAATCGGTCACTACAGTTCTTGGGGCTTTGGGGAAATAAAATAGGTGATAAAGGTGCAGAGGCCATTGCCAATGCTCTCAAAGACAGCCAAACCTTGGTGTGGCTCAGCCTGGTAGACAATGGTGTTGGCAATGCAGGAGCATGTGCTCTTGCCCCACTCATCAAGAACAGTACGCTAGAGGAGCTGTGGTTAACCAAAAACTGCATCACAAGAACAGGTGTGGAGTGTCTAATACTGGCTCTTGAAAGCAACACTAGTGTGAAGGCAGTGTGGTTGAGAGGTAATGAGCTCAGCccagaagaggtggaggagatgaCACAGCGGGAACCCAGGCTTACATTCTGATGATGCCAAGTGCGGGTCAACTATACTGGAGTATTATTGTTTACAGCCATGTGTATGTCTGTTTGTAATGTATGTAACTTCTTCAGTAGCATTTCCCTTAAAATGGTAGTTGTGTTATTTATAGGTTATTATATGTTTTTACGTACATTATGGATAATGTTGGATGTGATGTTCTCTATGATGTAAACAGTGTGGGCAAGCTTGTTTTATCCATTCACAATAAGTAGCATCTTCTGACCTGCTCTGCTACTACAGGCAGCTTGTTTGGTAGCATTCTTTTCATATTAGTCATATTAGTCATTGTGATAAGGAATTGGTCTGACACTTGTTTTATGTAAGCACCGCTGGGTGTGAGCCTATTGTTTCTGGCTAAATATCAAATAACAGTCAGGTATTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU617960 lncRNA upstream 18615 75733646 ~ 75734326 (+) True G545757
TU617917 lncRNA upstream 24299 75703490 ~ 75728642 (+) True G545716
TU617944 lncRNA upstream 63746 75686747 ~ 75689195 (+) True G545742
TU617926 lncRNA upstream 94425 75658295 ~ 75658516 (+) True G545725
TU617884 lncRNA upstream 155514 75597165 ~ 75597427 (+) True G545684
TU617972 lncRNA downstream 5314 75770605 ~ 75770861 (+) True G545769
TU617975 lncRNA downstream 8343 75773634 ~ 75773869 (+) True G545772
TU617977 lncRNA downstream 13510 75778801 ~ 75779033 (+) True G545774
TU617998 lncRNA downstream 54896 75820187 ~ 75820522 (+) True G545790
TU618627 lncRNA downstream 88346 75853637 ~ 75860809 (+) True G546373
XM_036980977.1 mRNA upstream 50339 75664369 ~ 75702602 (+) True LOC110526967
XM_021607693.2 mRNA upstream 180038 75498696 ~ 75572903 (+) False LOC110526596
XM_021607700.2 mRNA downstream 14125 75779416 ~ 75815231 (+) False cylda
XM_021607702.2 mRNA downstream 14129 75779420 ~ 75815231 (+) False cylda
XM_021607701.2 mRNA downstream 14130 75779421 ~ 75815231 (+) True cylda
XR_005052241.1 mRNA downstream 839399 76604690 ~ 76620121 (+) False LOC118964933
XR_005052242.1 mRNA downstream 839399 76604690 ~ 76620121 (+) False LOC118964933
TU617795 other upstream 330189 75421861 ~ 75422752 (+) True G545601
TU617662 other upstream 514777 75237800 ~ 75238164 (+) True G545485
TU616612 other upstream 1464803 74287778 ~ 74288138 (+) True G544565
TU615384 other upstream 2365254 73372805 ~ 73387687 (+) False LOC100136290
TU614905 other upstream 2607594 73038621 ~ 73145347 (+) True LOC110526543
TU618729 other downstream 162937 75928228 ~ 75970674 (+) True G546464
TU619876 other downstream 1122141 76887432 ~ 77036313 (+) False LOC110526968
TU620306 other downstream 1512701 77277992 ~ 77279354 (+) True G547884
TU620456 other downstream 1747318 77512609 ~ 77523423 (+) True G548000
TU620974 other downstream 2049084 77814375 ~ 77817061 (+) True LOC110526614

Expression Profile