RNA id: NM_001201555.1


Basic Information

Item Value
RNA id NM_001201555.1
length 3508
RNA type mRNA
GC content 0.52
exon number 13
gene id nod2
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 75752937 ~ 75765291 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGATATCTACATTGCGCGCGAGGTTTATAGAAACTCAACATTTTCGCTTTGTCACATTTACgaactgatatatatatatattttttgtgtgcaaaataCGTGGGGCTCTAACAGACCTATTGGAAGGGACATTAATCATTGGAATAAAGAGCCAGTATTTAAACAAATTCTAAACGTGACATGTCACTTTCACTTTCCCTGTAAATAAAAGGTACATGCACATGTGGTTTCTCATAATTCAATAGCGCTCAATAATACAATACTTTTAGAGAACTTGCAAATGCTTCACCTTGAAATAATAAGTTAATATGTTTATCGAATCGCTATTAAATGGTTTAGGAAAACGGCATCATTTACAGCGGGCAATTTAGCGAAATGAGGAATGACGAATTgtggaatgaggaagagagatagGAGTTGACGATTCTGCCTGTACCATTTGCGTGGACCATTCTGTATCGCACTCGAGTAGACAGATGATGATCTCGAAGAAGTCAGACAAGTCTCCCGCTGAAACCTGGTCCTGAGGCAGAGAGCAGAGCTGCTGAATGCCCTGTGCTGTGGTGGCTCTTCTGAGGGTCTGGAGAGTGTATTGGACCTACTCCTGTCCTGGGGCATGCTGTTCTGGGAGGACTACCAGAATGTACTGGTACCATGCCGTGGTCTGTGTGCCAACACAAGGGTGCTACTAGATCTGGTGTACACCAAGGGAGATGAGACCTGTCGACTGCTCCTGGCTGCTTTCAAACAGGTCCTCCCTGAGGCCCAAAGAGCTGGCCTCTCTTTTGGAAACTGTCGTACTGCCGATCTAGAAAATACAAGAGATGATACAAGAGAACTACATGGTACAGCTATCCAGACcctccagacagacaggcctgaTCTGGTGAGGAGGCTAAGGGACCATATTGAAGGAGCTCTGGAGGTCCTGCTACATACGGGCAGCTTTACACCATCTGATTGCAATGAAGTGCAGCTACCTGTGTACACCCCCTCACAACAGGCAAGGCATCTACTGGACCAGGTCAGATCAAAGGGGGAGCCTGCAGCAAAGGTCCTATTGCAATACTTTCAGCAAACAGAGGACCATCCCTCACCATCTAACCAAGAGGCTCCTCCCAAAGAGTGCTTGTCCTATCAGAAGAAGCTGCGCAGCACTGTGTCGGCCCAGTCACATTTCCTCGGAACGTATGGAGGAACCAGCAGTCTGTCTCTAGAAGACATCTACACAGAGGGTCAGCTGGAGCTTGCCCAGGGTGACAGTGAGGCCCAGCCCCAGACTGGTGCTCTGGGGCTGGAGGACGTGGTGGGCCTGGTGGGCACCCTGAACCAGGAGGCTGACACTGTGCTAGTCTCTGGGGAGGCAGGCAGTGGGAAGAGCACCCTTCTCCAGAGGCTGCACCTCCTTTGGGCCAGGGGGGCGGCTCTACATGAtttcttcctcctcttttccttcaGCTGCCGCAGGCTGAGCTCGGAACAGAGGGAGCTGTCTCTCAGAGAGCTGCTGTTCCTGCACTGCTGCTGGCCGGACGGGGACCAGGACCGAATCTTTCAGTTCATCCTGGACCATCCGCACCTCATACTCTTCACCTTCGACGGCCTGGACGAGCTCATGCAGAGCTTCTCAGACTCAGAGCAGAGGCACTGCTGCCCCACCCAGTGTGCCCCAGTCCCCACCCTGCTCTTCAACTTGCTGCAGGGATCCCTCATGAAGGGGGTGAGGAAGGTGGTGACCAGCCGGCCAGAGGCAGTGGGTCCCACCCTGAAGCGGTACCTTCGCAAGGAAGTCCTCTTGAAAGGCTTCTCGCCCGGCGGGATCGACTGCTTCGTGAGGAAGTATCATCGCGACCCGACGGTGGCCACCAGGGTCCTGGAGTGTCTACGAAGCAACACAGCTCTACTGGGCCTGTGTCACATCCCGGTTTTCTGCTGGATTGTGTCCAAGTGTTATAAGGAGCTGCTGGgctgtggagagggagagggcagtcCCCAGACCATCACAGACGTTTACCTCATGATCCTGCAGCACTTCTTCCAGCGCCGGGCCTCTCAGAGGAACACGATGGGGATAGGATGGGTGCAGGAGCACCAGGATACTGCCCTGCATCTGGGGCAGCTAGCCATGGAGGGCCTGGGGGCCTCTTGTTACATCTTCACAGGCACAGAGCTACAGAAGTGTGGGGTGACCGAGGAAGATATCTGCATGGGGTTCCTCATCCGTAGTAAagacctctcctcctccactaactGCAAACACTACGAGTTCCTGCACATTACCATGCAGTGCTTCTTTGCTGCTCTCTACATTGTCCTGAACAATAACTCGGACCGCTCCACCATCCCTAAGCTCTTTCAGCTGCAGGACAGGCAGCAACAGCCTGGCTTTCACAGGGTGTGTCTGGGGCACTGCTTGACCCAACAAGAAGGGGCCTTGAAGGAGGCCAATAAGGCAGCAGAGACACCCAACCTCCAGATAACAGCCACTTTTGTGTCTGGGCTCTTGGCTCAGCGCCACCGAAGCCTGCTGCTCCTCTCCTGCCCTGGGCCCACTCTGGACAGGAAGTCCAAGCAGGTGGTGACGTGCCTGTCCAAAGGCATACAGAAGCACTTTAAATCCATCCCTCGGCCCgtggagggggagaagaagagcaTGCACGCCATGCCGGGCTTCGTGTGGCTCATCAAGTGCATCCATGAGATGCAGGACAGCAGGATCGCCAGAGACACTATGGCTAAGCTAGAGGTGGAACACCTGAAGCTGACCTATTGTAACATAGGCCCTGGGGAGTGTACTGCACTGGCCTACGTGCTCCAGCACCTTAGGAACCCTGTGGGGCTTCAGCTAGACTACAACTATGTAGGAGACGTTGGCGTGGAGCAGCTGCTGCCTTGCCTGCATGTCTGCCACTCTGTATACCTGAGACACAATAACATATCAGATGAGGGAATTCGTAAATTGATTGAAAAAGGCATCCAGTGTGAGCGCTTTCAGAAGATTGCGCTCTTCAACAACAAGCTAACTGATGCCTGCACAGAGTGCTTCGCTCACCTCCTGAAGATGAAACAGAATTTTCTCTCTCTAAGGCTGGGAAACAATAACATCACAGCAGCAGGGGCAGGGCAACTGGCGGAGGGACTGAGGTTCAATCGGTCACTACAGTTCTTGGGGCTTTGGGGAAATAAAATAGGTGATAAAGGTGCAGAGGCCATTGCCAATGCTCTCAAAGACAGCCAAACCTTGGTGTGGCTCAGCCTGGTAGACAATGGTGTTGGCAATGCAGGAGCATGTGCTCTTGCCCCACTCATCAAGAACAGTACGCTAGAGGAGCTGTGGTTAACCAAAAACTGCATCACAAGAACAGGTGTGGAGTGTCTAATACTGGCTCTTGAAAGCAACACTAGTGTGAAGGCAGTGTGGTTGAGAGGTAATGAGCTCAGCccagaagaggtggaggagatgaCACAGCGGGAACCCAGGCTTACATTCTGATGATGCCAAGTGC

Function

GO: NA

KEGG:

id description
K10165 NOD2, CARD15; nucleotide-binding oligomerization domain-containing protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU617960 lncRNA upstream 18651 75733646 ~ 75734326 (+) True G545757
TU617917 lncRNA upstream 24335 75703490 ~ 75728642 (+) True G545716
TU617944 lncRNA upstream 63782 75686747 ~ 75689195 (+) True G545742
TU617926 lncRNA upstream 94461 75658295 ~ 75658516 (+) True G545725
TU617884 lncRNA upstream 155550 75597165 ~ 75597427 (+) True G545684
TU617972 lncRNA downstream 5701 75770605 ~ 75770861 (+) True G545769
TU617975 lncRNA downstream 8730 75773634 ~ 75773869 (+) True G545772
TU617977 lncRNA downstream 13897 75778801 ~ 75779033 (+) True G545774
TU617998 lncRNA downstream 55283 75820187 ~ 75820522 (+) True G545790
TU618627 lncRNA downstream 88733 75853637 ~ 75860809 (+) True G546373
XM_036980977.1 mRNA upstream 50375 75664369 ~ 75702602 (+) True LOC110526967
XM_021607693.2 mRNA upstream 180074 75498696 ~ 75572903 (+) False LOC110526596
XM_021607700.2 mRNA downstream 14512 75779416 ~ 75815231 (+) False cylda
XM_021607702.2 mRNA downstream 14516 75779420 ~ 75815231 (+) False cylda
XM_021607701.2 mRNA downstream 14517 75779421 ~ 75815231 (+) True cylda
XR_005052241.1 mRNA downstream 839786 76604690 ~ 76620121 (+) False LOC118964933
XR_005052242.1 mRNA downstream 839786 76604690 ~ 76620121 (+) False LOC118964933
TU617795 other upstream 330225 75421861 ~ 75422752 (+) True G545601
TU617662 other upstream 514813 75237800 ~ 75238164 (+) True G545485
TU616612 other upstream 1464839 74287778 ~ 74288138 (+) True G544565
TU615384 other upstream 2365290 73372805 ~ 73387687 (+) False LOC100136290
TU614905 other upstream 2607630 73038621 ~ 73145347 (+) True LOC110526543
TU618729 other downstream 163324 75928228 ~ 75970674 (+) True G546464
TU619876 other downstream 1122528 76887432 ~ 77036313 (+) False LOC110526968
TU620306 other downstream 1513088 77277992 ~ 77279354 (+) True G547884
TU620456 other downstream 1747705 77512609 ~ 77523423 (+) True G548000
TU620974 other downstream 2049471 77814375 ~ 77817061 (+) True LOC110526614

Expression Profile