RNA id: XM_021607702.2


Basic Information

Item Value
RNA id XM_021607702.2
length 5883
RNA type mRNA
GC content 0.50
exon number 17
gene id cylda
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 75779416 ~ 75815231 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAATCCCGGGGGGTGGGACTTAATGATTAACCTGAAACCCAGCCTATTGGCACTTGTGATGGATGCAGATTGGCCAATGGGTTATGTTTTGGCATATTTTCAGGAGACTAACATTTCGGGGTCTATTGGTTCTGTAAATTATCTTTATTCCTCTCGCTATAAGGCCTGACTTATTTTGTCTGTCACGTAATATATGTTTTGTGTGTCAGTATTTAATAGTATAGTCTAAGAGTCGTTCAGAAAAATATTTAAAAGCCGTAGATAACATGCTCTTGTTGCATGGGACAGCTAGCTATCCATACTAGCTACTCTGCCTAGCTAATTTCGAGGCTGTCATATCAATTATCAGCTGGCTTGCTATCAACAAGCTAGACAGTTAATTGTACAAACGTATCAAAACGTCAGCTACTAAAGGACAGTATTGGAATGAGCAGGTGACATGACACTCCAGCACTGAATTGACGTTTGAATAAGGTCCTTCAAAGTACATTGGGGCATGCAGGCAGACAGTTGAGACCATTATGAGGGCACCCCAGGCCAGCAGGAGCCTGTGACCGGCCATAACACCCTCTGTCTACTCTCTAACCAGACAACCTTCCCCTCAGGTGTTAGGCCTAGTTTCTCTCTCACCCTTGTTATGCCCCTTTCACTGCTTTGGGGATAGAGGAACGTCcataaagggaagagagaggggcttCATATTGGGTTAGGAAGACAAGTGGACCTTGTATTTCCCCCTGCTATGCACCAGCTGACCCAGCCCCTACAGCCATGAGCTCTGCCCTGTGGAGCCAGGAGAAGCCCAGTGGGGGCTTCAGGGAGGACTGGCGCTTCTACATGGTGGTCAAGGAGTGTACAGTGGAGAAGCCCCCCCAGAAGACCTTGAGGATCCCCCGGGGCAGCCTGGGACAGGCCTGTCAGGAGAGGAACAGCCTGGGGCGCACGCTGCCCCCCAGCAAAGGCAAGAGGAGCCTACGCGTCCTGGACCAGACCAACGTGGTGCTGAGCCTGGATGAGCGGGACGTCCTGGAGCTGGATGAGAAGCTAGCTGAGCTGCTGTTCCCCATCACCAACTGTGAGGAGCGCTATGCCCTGCTGTGCAACAAGCCCAGGCTGGAGCGGGCCAGAGACATCGACTGTGGCTCCAAGGTGCGCGTGCAGCTGCGTTCGGGGGATGAACCTTTGCCCGGGGTAGTCCGATTTAAAGGATCTCTCCTCCCAGACAGGGCTCTCTCCGGGGTCTGGTTTGGAGTGGAGCTGCTGGAGGAGGGCAGAGGCCAGGGCTTCACAGAGGGCTCCTACCAGGGCCGACAGCTGTTCCGCTGTGAAGATGAGTGCGGGGTGTTCGTGGCCCTGGACAAGCTGGAGCTGTGGGATGACGAGGAAGAGGAGCTGGGAGAGCTAGAGGTGGATCACGTCATcctggtggaggaggagatggattTCCATCCGCTGGAGATCAACTCCAGGGTCCTGGTCCAGACCAGAGAGGGGCCGGAGAGGGGAACCATCATCTTCTGTGACCTGCTGCCTGGGAACGAGAGCCTGGGGTACTATGTGGGAGTAGACATGGACAATCCTATTGGGGACTGGGATGGTGTTATCGATGGGAAGCTGCTGTGTAATTTCGCCAGTCTGGAACACACCCGTCTAGTCCCCATCTGTGACGTAATGCCAGTAGGGGAGGACCCTGCCAAGTCCCTCACAGACACGCCCCCTGACTTCAATGAAACCACACCTCCTACCAGGGCCCCGCCCTCTGCTTCCTTGTCCAATGACAACAAGTTCCACTCCCTGCCCTTCAGCCTGAGCCGTAAGACGGGGCCCAATGGCAGCATGAGCCATggacccctctccctctccgtgcaGTCAGTGATGGGAGAGCAGATGCCAGAGCCCCCATcgtccagccctccctccccgaGGCCCCCCTCACCCCCCAGCTCTCGCGGGGGTGGCGGAGTACCTGGTCTGGAGGTGGGGTCCCTAGTGGAGGTGAAGGAGAACCCGCCCCTGTGTGGGGTCATCCGCTGGGTGGGGCAGCCCCCGGGACTACCAGAGCCACTGGCTGGCCTGGAGCTGGAGGAAGAGTGTGTTGGCTGTACAGACGGCACCTTTCAAGGTACCCGCTACTTCAGCTGCGCGCCCAAGAAGGCCCTGTTTGTGAAGCTGAAATGCTGCCGGCCCGACTCCCGTTTCCCCTCCCTACACCACTCCTCCAACCCCATAGAGAGATGCAACTCTATCGCTTTCGGGGGTTATCTGAGTGAGGTGGTGCATGAGAACACTCCTCCACGCACTGAGAATGACGGTCTAGACATCATGGTGGGCAAGAAGAAAGGTATCCAGGGACACTACAACTCCTGCTACCTGGACTCCACACTCTTCTGCCTGTTTTCCTTCAGCTCAGTCCTGGACACAGTTCTGCTGAGGCCGAGGTCCAAGACTGACGTAGAGTATTACCGAGAGACACAGGAGCTGCTACGCACAGAGATAGTCAACCCCCTGCGCATACATGGCTATGTGTGTGCCACTAAAGTGATGAAGCTCAGAAGGATACTGGAGAAGGTAGAAGCTGCCTCAGGGTTCACATCTGAAGAAAAAGATCCTGAGGAGTTCCTCAATATTCTGTTCCATCACATATTGAGGGTGGACCCCTTACTCAAGCTGAGGTCGGCAGGTCAGAAGGTTCAGGACTGCTACTTCTACCAGATCTTCATGGATAAGAAGGACAAAGTGGGCGTGCCAACCAGCCAGCAGCTCATAGAGTGGTCCTTCATCAACAGTGACCTCAAGTTTGCTGAGGCTCCTTCCTGCCTTATCATCCAAATGCCTCGCTTTGGGAAGGACTTCAAGATGTTCAACAAGATCTTCCCCTCACTAGAGTTAGACATCACAGACTTACTTGAAGACACTCCCAGGGAGTGTCGAATCTGCGGGGGTCTGGCTCTGTATGAATGCAGGGAGTGCTACGAGGACGGTGACATCACTGCCGGGAAGATAAAACAGTTCTGTGAAAAGTGCAATACACAGGTTCACCTCCACCCGAGGAGGAAGGCCCATCGCCACGGCAAGTTGTCCGTCCCCAAGGAACTGCAAGAGGGTgtgtggcggcagggtagcttcCCTCGCCAGCGGATGGAGCTGTTCGCTGTGCTCTGCATCGAGACCAGTCACTACGTAGCGTTCGTCAAGTACGGCCACCAAGACTCTGCATGGCTCTTCTTCGACAGTATGGCCGACCGCGACGGAGGGCAGAATGGCTTCAACATCCCCCAGGTGTCTCCATGTCCGGAGGTGGGGGCCTATCTGAAGATGACCCCTGAGGAGCTGCACGCCCTGGACCCCAAGAGCATCCAGGGCCAGGCCCGCCGTCTGCTGTGTGACGCCTACATGTGCATGTACCAGAGCCCCACCATGAGCCTGTACAAGTAGAGCCCCTGGGGCAGGAgactcccagacagacagatagacagacggcAGAGCTGCAGTCCAGAGCTCTCTCCCTGtgtccccacctcctcctcaatgCCTGCCCCTGTCTCCTCAGTCTACTCTGCCCAAAGTGAAGACTATAAAAGAGAAAAGCTTATTTGCACTGTGCATTTGTTGAAGTGTTGTTGTTCTTGTTTTCCCTCTGTGGTGAACAACAAAACAAGCTGATCTTGACGTCAGTAGCTTCCCTGTGCCTCGTAGCTGAGTGGTGGGGGATGGCGGTCGATGGAGACACGAGAAGCCCGCTGAATATTATTCTCTTcctgtggagaggaagaggagagagcgagagagggggacagcATGCTCGCCTCGGCTGACCAAACATGCGAAACAAAAACAAGCCATGTTAATGGAAGGACAGAGGCCACCTCATTTACCTAAAGCAGGGGGAGTCCTGCTTTTCTTAATCAGTGTAAGAGATGGGAGCGCTCCATAATTCAACTCATAGTGGAAATAATGCCACGTTCAAAACCCTCAACCAACTATGTATACGGTTTAAACAGCTTGTCTTAAGACCTCCTTAGTACCATGATCCATTATGTCAGATGTGTACCATCACCAACAGTATATTTGTGTCAACCGAATATAGCATTAGGCTCAACCAGAATACTTTGGGTGGCATATTTCCCTATTATACCTTGTAGATttcatgaaagtgtgtgtgttccaaatggatATATGGTAAAGGCGGCTGCATGACAGTTCTCCATGCAGTCAGAGGACAGGTCAGGTACTCTAAAGCCTGGCAGGTGTTTTTGAATTAACAGGTTGTGGAAATATTCAACTGAAATTTTAAATTTTAGATTTTTCTTTTTTGTAAGTCTCAAGGCATTGTGTCAGCAAACTAAATTATTTTATATCTAAACTTTTAACTGCACTCAAGACATAGCAAACTCCTTGACATTTGTCATACTCAATAGTTATCTATCTGATGGGACAAACAGTATATGCCTTTTGTGTCTTTTTCATACATTTGTGACAGTCAACTCCCCAACCATGGATCAAAATCAAGTAacttaaaatacagtatatacctaAATATATTTTAATCTGAATATATTTACATTCTCGTATTTTCTTTTTTGaaggaaatgtaaaaaatatattaaatataatctttactcctcctcccatctctcaccAGATATTGAAGTGAGTTCTTGTGATTCATGCTGTCCCATTAATACTACTGAATGTTACCACCAGTGGCATGCTGGGTAGTGTAGTTTAATGtcacaatgaaggcctgattgggaGGTTCAATGCTGGTTTCCAGATGATTACAACTTCCACAAAGCCCCATTGTGATTGTTTTCCCAGGGACCCTCAAAGGAGACATTATTACTGTATGTGCTTGTTTCTGCACTGCTGAAGTTTAATGctcatcacagacagacaggaggactTTCTTTACTCCACTGGAGCATGTGAGTCTCTGATATGGATATCTATGAACATTGACTTGTGCATCTATCTTTAAACTATATAACGGATGCAAATTAATGTCAGTCCTGTTCTCGTAAATGTTAACTAAATTAAAACCCCTGTTTTGAAAAGTTTGAAAagtgtttatttgtgtgttggAGATGTTTGCCATGTGCCTGGCAGTTTGCTTTGTTTGGCGAGTCTGAGTACGAGTGAATTGGGGTACGCTTGTCATGTAGCTTGATTCAATTCTGGGGTCCGTATCCTCACCTGTCACAGAGGTGCAGGTCTCATTAGCATGGTGTCTCTGCAGGGGCTCAGCACAGCGAGGATTCTGCTCTGGTTGATGCGGTGCAGATGGGACTAACCTCCCCGTGGGCAGAGACACAGCAGCTGGACACTGGTCCGACAGGGAGCTCGAGGCCCAGACAGCACATTAACACAAGGTTCTATTTTCTTCTCTTTATCACCTCAAACTACAGTCTACTGGAAAAGGCAGAAatactttacattttttaaacctATCTCTGATCAATCGCTGTTATAGTGAAAAGGGTATGCTTTTTTGAGTTAGTCATAactcactgggcacagacatcaattcaatgtTTATTCCACATGGCTCAATGTTATTTTATTGAAAtggcgtggaaacaacgttgattcaaccagtgtgtgcccagcggGTGCATGGCTACATTTCTAGCTTAGTGAGTGACTTGCAGTGCCTGTCTGTGTGGGCTGCAGCACTTCAAGCTCTTGAGAAAAGTCTCATCTATGTTTAAGCAGTTGTTGACAATGTGTGAGCAAGTGGGTTTATGCCTTTAGTCATAGGCTTATTACAATATGGGCCCCAGTTTAGTCCTCTTTAAAACAACAGTCAATCATCTGCTGTCCaggaaataaatacaaattgggTGCAATATTCTTAACAATAAAGTATGACAGATCAGTTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU617977 lncRNA upstream 387 75778801 ~ 75779033 (+) True G545774
TU617975 lncRNA upstream 5551 75773634 ~ 75773869 (+) True G545772
TU617972 lncRNA upstream 8559 75770605 ~ 75770861 (+) True G545769
TU617960 lncRNA upstream 45094 75733646 ~ 75734326 (+) True G545757
TU617917 lncRNA upstream 50778 75703490 ~ 75728642 (+) True G545716
TU617998 lncRNA downstream 4956 75820187 ~ 75820522 (+) True G545790
TU618627 lncRNA downstream 38406 75853637 ~ 75860809 (+) True G546373
TU618668 lncRNA downstream 62996 75878227 ~ 75878737 (+) True G546404
TU618704 lncRNA downstream 86287 75901518 ~ 75901753 (+) True G546440
TU618708 lncRNA downstream 91322 75906553 ~ 75909615 (+) True G546444
XM_036979155.1 mRNA upstream 14129 75752937 ~ 75765291 (+) False nod2
XM_036979154.1 mRNA upstream 14129 75752941 ~ 75765291 (+) False nod2
XM_036979156.1 mRNA upstream 14129 75752941 ~ 75765291 (+) False nod2
NM_001201555.1 mRNA upstream 14516 75752977 ~ 75764904 (+) True nod2
XM_036980977.1 mRNA upstream 76818 75664369 ~ 75702602 (+) True LOC110526967
XR_005052241.1 mRNA downstream 789459 76604690 ~ 76620121 (+) False LOC118964933
XR_005052242.1 mRNA downstream 789459 76604690 ~ 76620121 (+) False LOC118964933
XR_005052240.1 mRNA downstream 789461 76604692 ~ 76620121 (+) False LOC118964933
XM_036980994.1 mRNA downstream 1011770 76827001 ~ 76950160 (+) False LOC110526968
XM_036980992.1 mRNA downstream 1011770 76827001 ~ 77038395 (+) False LOC110526968
TU617795 other upstream 356668 75421861 ~ 75422752 (+) True G545601
TU617662 other upstream 541256 75237800 ~ 75238164 (+) True G545485
TU616612 other upstream 1491282 74287778 ~ 74288138 (+) True G544565
TU615384 other upstream 2391733 73372805 ~ 73387687 (+) False LOC100136290
TU614905 other upstream 2634073 73038621 ~ 73145347 (+) True LOC110526543
TU618729 other downstream 112997 75928228 ~ 75970674 (+) True G546464
TU619876 other downstream 1072201 76887432 ~ 77036313 (+) False LOC110526968
TU620306 other downstream 1462761 77277992 ~ 77279354 (+) True G547884
TU620456 other downstream 1697378 77512609 ~ 77523423 (+) True G548000
TU620974 other downstream 1999144 77814375 ~ 77817061 (+) True LOC110526614

Expression Profile