RNA id: XR_005052241.1


Basic Information

Item Value
RNA id XR_005052241.1
length 1448
RNA type mRNA
GC content 0.51
exon number 5
gene id LOC118964933
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 76604690 ~ 76620121 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagccagccagtaagtcagccagttATTCAGTCAGTCAGCAAGGGCCACACAAGGTAACAGACAGGGGAACTTGCAGGCAGCTCCTAACAGCTCTGAACTAAACACGGACTCAGATTCACTTCAGAAAAGCCCTGTCTGAGTCAGTGGAGGAGACCGACAAGCTAACTACCtgactcagtcagtcagtcatgatGTGTAATGTTACCTACCCATCCATGAAGTCATTGGCTCTCTGTTCAGCAGCGATGGCCTTCTCGTCTGGCCGGCCCACCCGCTCTAGGAAGCAGAGGGCAGGGTCTGCACGCACTGTGTTATACTTCTCATAACCTGTATAGTGGACCACAGTGGAGAGacagacagcctgGAGTGTGGGAGGTATCTGTCGGAGAAGGGAACCTCTCTGCCCCAGACATACATGCACATGAGTGTCGTTCTGTGGGTTCCAGTCTGAGTCAAAGATAATACAGGTGTCAGCAGCAGTCAAGTTGATGCCCAGACCTCCAGCCCGGGTACACAGCAGGAACACAAAGCGGTCCGAGTCGGGTTTGCTGAAACGGTCTATAGCTGCCTGACGCAGGTTACCTCTCACTCTGCCATCGATACGCTCATACAGAGAACAAGGTGGTTTAGCACGCTGATCAAGAGCAGCCTCTTTCCCAGGAGCCCTGGCTTCGCCTCACCCCACATCCTACCCCTCATCTTCTTCACCTTACACACCTCACCTCTACAGTGACCCACTTCTCTCCACCCACTCacatactcctctctccctctgtctgatgTGGGAGTTCCCCGAGGGAGTCTGTGACCTGCCGCTGATCCCCGGCTAAGCCTTGCATTGCCACTGAGCGGAGCACCTCGCCTTGTGTGTTTACACTGGTTTGGTTCGGGGTTTGAGTGCCAGAAAGAagcagggaggggagaagaacacAGGGCCAGGCACGGGATagtgagagagacaagaggagaggatagagagagggagaagaagagagaggacagagatatcaggagggaaagggaggaagaTATAGAGAGACCACACAGACCAGGCCAGTTGCCCGCTTTCCTCAGCTTAGACGGGCTGCTGGGATAATATCCTTTTCATTTAGCGTGCAAACAGGAAGCTCATTAAGCCAGGAGATTAAGACCTTGAATGAAAGGGTCTTGGTACATTTTTCTGCTTCTGTTACGCAGTCTTTATCATCTCCCTGCTCTGGGTAGCATTATGGAGTGATGAGCACTGGGGGCTTTAAAAGGCTCTTTCTCAGACAGTCACTGAAGAGCGAGGCTAATGCTTAGATATTCAACATTTCTCTTCAACTACATTCAATTTAATAAGGGAAAGTACTGGAGTGATTCAGCTTTTGTTGCACTGCaaactgctagctagctaacaccagatAATAAACCATAAATACTTCACTTTGAAAATGGAGCTGAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU619461 lncRNA upstream 81090 76522782 ~ 76523600 (+) True G547163
TU619240 lncRNA upstream 171409 76430843 ~ 76433281 (+) True G546947
TU619200 lncRNA upstream 205666 76389560 ~ 76399024 (+) True G546907
TU619190 lncRNA upstream 230226 76374193 ~ 76374464 (+) True G546900
TU619176 lncRNA upstream 250038 76354429 ~ 76354652 (+) True G546886
TU619546 lncRNA downstream 6077 76626198 ~ 76629445 (+) True G547239
TU619481 lncRNA downstream 21310 76641431 ~ 76641992 (+) True G547183
TU619590 lncRNA downstream 56376 76676497 ~ 76677048 (+) True G547278
TU619625 lncRNA downstream 85503 76705624 ~ 76706152 (+) True G547300
TU619634 lncRNA downstream 90136 76710257 ~ 76710510 (+) True G547303
XM_021607700.2 mRNA upstream 789459 75779416 ~ 75815231 (+) False cylda
XM_021607702.2 mRNA upstream 789459 75779420 ~ 75815231 (+) False cylda
XM_021607701.2 mRNA upstream 789459 75779421 ~ 75815231 (+) True cylda
XM_036979155.1 mRNA upstream 839399 75752937 ~ 75765291 (+) False nod2
XM_036979154.1 mRNA upstream 839399 75752941 ~ 75765291 (+) False nod2
XM_036980994.1 mRNA downstream 206880 76827001 ~ 76950160 (+) False LOC110526968
XM_036980992.1 mRNA downstream 206880 76827001 ~ 77038395 (+) False LOC110526968
XM_036980993.1 mRNA downstream 206880 76827001 ~ 77038395 (+) False LOC110526968
XM_021607721.2 mRNA downstream 875632 77495753 ~ 77499433 (+) True irx5a
XM_021607726.2 mRNA downstream 1103704 77723825 ~ 77730489 (+) False LOC110526613
TU618729 other upstream 634016 75928228 ~ 75970674 (+) True G546464
TU617795 other upstream 1181938 75421861 ~ 75422752 (+) True G545601
TU617662 other upstream 1366526 75237800 ~ 75238164 (+) True G545485
TU616612 other upstream 2316552 74287778 ~ 74288138 (+) True G544565
TU615384 other upstream 3217003 73372805 ~ 73387687 (+) False LOC100136290
TU619876 other downstream 267311 76887432 ~ 77036313 (+) False LOC110526968
TU620306 other downstream 657871 77277992 ~ 77279354 (+) True G547884
TU620456 other downstream 892488 77512609 ~ 77523423 (+) True G548000
TU620974 other downstream 1194254 77814375 ~ 77817061 (+) True LOC110526614
TU620991 other downstream 1241947 77862068 ~ 77865868 (+) False LOC110526615

Expression Profile