RNA id: XM_036980993.1


Basic Information

Item Value
RNA id XM_036980993.1
length 5077
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC110526968
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 76827001 ~ 77038395 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTTCCATTTTCATTCGAAGCAAATTAATAATAGATTGTGATCAGAAATGTATTCTTTCATAACCCGTATTTGTAGCTAGGTTGTTAATACAGGCACCCGTTCATTTAATATGGCCTGTTTATTTAATAGCGCTATAAGTTTTGTTGTAATTCTTCTGTTGGAACTACAACTACCAAGATGCGCTGCAGTGAACGCGGGTGTGTAAACACAACTCTAGGAAACATGAAACGATCGGGTGGCAGTGAGAGCGAGAAGAGAAGAAAGAAGCGCAGGCTGCTGCAGGAGCTAGGAGACCAGCGCATCCCCTACCTCGGGCCCTCAGACCATGGCTTCCAACAGCTGTGGGAGACTAGCTACTCTGGCCTGGCTCTGCGGCGGTCCTGCTCCCTGCCTGAGGAGCTCCATGGTCGGGTGGAGGCTGCTCTGTTCACCCTGCGGCAGAGGGGCTGTTTCCTGAGGGACCTGGTGAAGGTGAGGGACCGAGACGTCTTCACCGCCGTGTCCCGGGTGCTGCTGGGTCAGCCAGGAACCACCTACCGCTATCTGGACACGCGGCTCTTCACCATCCCCTGGCACACAGACGAGCAGAGAGGGACCTGCTGTGACCCAGACCTCAGCGCCGCATGCAAAGCACTCTGGGAGCTCAACTGCTTCTTCTGCTCTGATGTCGGAGACAGGAAGGAGGGGGATGTTTTCAAGCAGTGCAGGAAAGAGTTGGTTGGTGCTATAGAGTCTAAACCCAGTGTAGAAGGAGACACGGAGTCTAAAGATAGCGAGGAGTCCAAACCCAGTGACGATGGAGGAGACTCGGAGTCCAAGcagagtgaggagggagagactGAGTCAAAGCACAGCGACGATTGGGACATAGAGTCAAAATACAGTGAAGAGGAAGGCCCATCGTCCAAACAGGATGCAGCGTGGGAGTCAAGACACGGCGACGAGATGGGAGACTTGAAGACTAAACAAACTGAATTGGGGAGTCCAACGGCGTCAAAACAACACAGTGAGGGAAAACACACAGGCTGGAAGCACAGGCCAGCTGgcagcacagagacagagaccacagACCTAGGCACTCAGGAGAAGCCTGTGGCTGAGCTAAAACACAGTCTCTCTGGGTACCACATTGAAGATGAGGAGGATGAAGACCAGCAGAGTGGCCAGGGATGCTCTAACCTCAACCCTGCTAAGACACCCTGTCCTGGCCCGACCCAGTTCAACGTCACCCTGCTCAACTACATGGACCCAGCAGCTATGAGCCAGCTGAAAGAAGAGCCGTATTATGGGATGGGCAAGATGGCTGTGGGCTGGCACCATGATGAGAACCTGGTCAGCCTATCTCCTGTGGCCGTCTACAGCTACAGCTGTCATGACGATGACAAAGGTGTGAGCTCGGAGGAGGGTCCTGCAGAGAAGGGCTGCTGGAGGATTGGTCTAAAGGTGGCCTGGGACATCCACACCCCTGGACTGACCCTCCCACTGCAGTCCGGAGACTCCTACTACCTTAGAGATGACCTGAACAGGACCCATCAGCACTGTGTTCTGGCTGGAGACTCAGCCCGCTTCAGCTCTACACACAGAGTGGCGGAGTGTTCCACCGGGACCCTGGACTACATCCAGTCCCGCTGCCGGGAGGCCCTGTCTAACCTGAGCACAGACCCAGAAACAGGGACCCACAGCCTGCTGTCTCTGCTGCCAGCTACCCTGCAAGGCTACGAGGAGATACACAACGAGGTGGAGTTTGAATGGCTGAGGCAGTACTGGTTCCAGGGCCAGCGTTACACCCGGTTCTGCAGCTGGTGGGCCAGACCCATGGAGCAGCTGGAGAAtgactggagagagatggagctcaTGACGCAACTCTTACTGGCAgcggtagaggaagagggacaaccggaggagggcaggagagagatggcagagaCCCTGCTAACtgccctgacagacagacagcagcacagACAGACCTGGAGAGACAGGTGCCATTCCAGCCTGGCCAAGACCCTGCCCCCAGAAGAGGCCCCCGTTGACCGGCCATTTTGGGCCGACGACGACCCCAGCATGCCTCTGCCCTTTGACCTAGCTGACATCATCAACAGGGTGGAGTCACTCCTCTGGAGGATGTGACGGATGGGacacaaagaaaagagaaggagaaagagagcgagagagtcacCCCGTCATCTGAACAGCCTCTATCGTGAGGACAGACgacagaggaggagaacaggacCTACCAACTCCTGATGGTGTCAACGTCCTCCAATGGGGGTAGACTTCCCCACCCCAGCCCACCCTGGACCCCTCCCAACCCTGTACCTCGCCCCACCCCGCCCAAACCAGTCTCATCTATCTTTGCTTGGATTGACTCAACATGGCTGCAACATGGAGGATGAAACCCTTGTTAGCATGCTTTGCTAACATGCTATAGCTGGTATTGGAACTAGTCTCACAATGGTAACATGGATAACCTGCAGAATTAAAACTGAATGTATAGGAATGTATTATTTCAATCAATGTTCTGTTTCTTTTCTACATTTAACCAGCGTTGTGTATGGATATGACAAATagtcatacagatgtaggatcttcatttgaccagtttctcacagcagcaaaattatcctgcagcaacaggaaatgtgaattattgggtggattataattaatggacatttttgtaagggttgatacatttttacttagggcaaatcaagtctgacattttcatGTGGAAATTACAAACAGAAATCCTTTTAAACCTTTTAAGCCTTGAatgcactacaagtttgcatttccttgCTGCGCAGGAaatttcctgcaacaacagggtgatcaaattaaaatcctataTCTGTAGTACATTTATACTTTCTGTTTCTAACTCAATGTTGTTCTAATTATACTGTTGTATCCTAATGTCCATTCACTTCCTGTATTTCACAACTTTCTTGTTCAGAATCTCACAGGGCATGACTTTGTGTTACCAAGATGTgactgaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaatgtgtgccactgcagtatttacagtatgtgaaattgtatgtgtgtgaagCAGTATGATAGGGCCTGTAGCAGGGCTGGGAGATGTTTGTGTTAGAGAGGAAAGGACACGAGTCTAGTAGGCATGTCTCTGTCTGCAGGCCTGTCTCTAGTCTGCTCTGTAGGACTGAAAGGCAGCCCAGGCAGACAGCTACTGTAGGGCTGAAAGGCAGCCCAGGCAGACAGCTACTGTAGGGCTGAAAGGCAGCCAAGGCAGACAGCTACTGTAGGGCTGAAAGGCAGCCCAGGCAGACAGCTACTGTAGGGCTGAAAGGCAGCCCAGGCAGACAGCTACTGTAGGGCTGAAAGGCAGCCCAGGCAGACAGTTTATGTAGGTCTGAAAGGTAGCCCAGACAGACAGCTACTGTAGGGCTGAAAGGCAGCCCAGACAGACAGCTACTGTAGGGCTGAAAGGCAGCCCAGGCAGACAGCTACTGTAGGGCTGAAAGGCAGCCCAGACAGACAGCTACTGTAGGGCTGAAAGGCAGCCCAGACAGACAGCTACTGTAGGGCTGAAAGGCAGCCCAGGCAGACAGCTACTGTAGGGCTGAAAGGCAGCCCAGACAGACAGTTTATGTAGGACTGAAAGGCAGCCCAGACAGACAGTTTATGTATGGCTGAAAGGCAGCCCAGGCAGGCAGTTTTTTTAGGGCTGAAAGGCAGCCCAGACAGACAGTTTATTTAGGGCTGAAAGGCAGCCCAGGCAGGCAGTTTTTTTAGGGCTGAAAGGCAGCCCAGACAGACAGCTACTGCAGGGCTAAAAGGCAGCCCAGGCAGGCAGTTGTGTAGGGCTGAAAGGCAGCCCAGGCAGGCAGTTTGTGTAAGGCTGAAAGGCAGCCCAGGCAGGCAGTTTGTGTAGGGCTGAAAGGCAGCCCAGGCACGCAGTTTGTGTAGGGCTGAAAGGCAGCCCAGGCAGACAGCTACTATAATGTGTGGCTGATAGAAGGATCCCCATCCTAACTGCCACTCTGTCTTCATAATTGCAGCTGTTCAATGGCTTTTAATTAGTCTTAAAGCGTGTAGAGCACCACTTTCCCTGTATCGCTGCAGGCCTGAAACTCAGATCCACGGCTTCTGACAAAACCAACCAGGAAAGAGAAGCTATGGGTGGAAATGTGATGGTTGTCAATGCCAAGCAGAGCAGCCTTCTTTTTTATTTCTTAGTAACACTTTATTTccgggatcatcaactagattcagccgcgggacgaattacaaatcatttttagactgcaaattgaccccaAGAAGCCTAAACggataatatttgactaaaacataataatttcaaaccttgctcaCGTTTGTACACGATTACTTGTCTcactattatgcgtgggaatacttgggaatttaaaaaaaaaatcttattttattattattttgctTCGAAAActtgggggccaaataaaaccacccgcggGCTGCAGTTGTGCAGCTGCTTTCTTTGACCTGGCCACCATAATGCCTTTATAACAATGTTGTAAACATGTCATAATGCTTCATAGCTTGTGTCATTGTCATAACTGAAGCTTTATGGCATGTGTTGACATGTTATGACTCGTGGTATGAAGCTTTATAACATGGTTAGGACATTTTTATGAAGGGTTATGAAGAGCTCATGGTGTTTAGTTCAAATGAAGTCTTACCAATTTCTTTATCTATATATATCAACAGGAAGTATAACTGATATGTAGTGTTAAAAATCCACTTCTCAAAGTTGTTTTTTACTTCTGGAGGTTTTTCCTATTTCAAATGTTAACAGTTGCCAAAATGTTGTTCTCTTGCTTAATCTTTTTGTATGTTGACTGAGGTTGAGATTGTAGACTGGCTGTATTGTTGAGTTGAACAACTATGTGCTCTCTGTTTCACCGCTCAGCTTGTCTGTCTGAAGCTTTAGGAAGGCAGTAAATAAACCAAGACAGTGTTTTATGACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU619866 lncRNA upstream 7770 76818961 ~ 76819231 (+) True G547514
TU619807 lncRNA upstream 55651 76771081 ~ 76771350 (+) True G547455
TU619769 lncRNA upstream 77934 76745584 ~ 76749067 (+) True G547419
TU619768 lncRNA upstream 84599 76742139 ~ 76742402 (+) True G547418
TU619762 lncRNA upstream 87480 76738926 ~ 76739521 (+) True G547415
TU620145 lncRNA downstream 32136 77070531 ~ 77070771 (+) True G547757
TU620217 lncRNA downstream 76725 77115120 ~ 77115366 (+) True G547800
TU620220 lncRNA downstream 78091 77116486 ~ 77116711 (+) True G547803
TU620227 lncRNA downstream 96742 77135137 ~ 77135346 (+) True G547810
TU620253 lncRNA downstream 150275 77188670 ~ 77188881 (+) True G547835
XR_005052241.1 mRNA upstream 206880 76604690 ~ 76620121 (+) False LOC118964933
XR_005052242.1 mRNA upstream 206880 76604690 ~ 76620121 (+) False LOC118964933
XR_005052240.1 mRNA upstream 206880 76604692 ~ 76620121 (+) False LOC118964933
XM_021607702.2 mRNA upstream 1011770 75779420 ~ 75815231 (+) False cylda
XM_021607721.2 mRNA downstream 457358 77495753 ~ 77499433 (+) True irx5a
XM_021607726.2 mRNA downstream 685430 77723825 ~ 77730489 (+) False LOC110526613
XM_021607725.2 mRNA downstream 685431 77723826 ~ 77730487 (+) False LOC110526613
XM_021607724.2 mRNA downstream 685431 77723826 ~ 77730488 (+) True LOC110526613
XM_021607728.2 mRNA downstream 775985 77814380 ~ 77847797 (+) False LOC110526614
TU618729 other upstream 856327 75928228 ~ 75970674 (+) True G546464
TU617795 other upstream 1404249 75421861 ~ 75422752 (+) True G545601
TU617662 other upstream 1588837 75237800 ~ 75238164 (+) True G545485
TU616612 other upstream 2538863 74287778 ~ 74288138 (+) True G544565
TU615384 other upstream 3439314 73372805 ~ 73387687 (+) False LOC100136290
TU620306 other downstream 239597 77277992 ~ 77279354 (+) True G547884
TU620456 other downstream 474214 77512609 ~ 77523423 (+) True G548000
TU620974 other downstream 775980 77814375 ~ 77817061 (+) True LOC110526614
TU620991 other downstream 823673 77862068 ~ 77865868 (+) False LOC110526615
TU621269 other downstream 1382465 78420860 ~ 78496470 (+) True G548703

Expression Profile