RNA id: TU619876


Basic Information

Item Value
RNA id TU619876
length 1474
RNA type TUCP
GC content 0.49
exon number 6
gene id LOC110526968
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 76827001 ~ 77038395 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAACAGGACCCATCAGCACTGTGTTCTGGCTGGAGACTCAGCCCGCTTCAGCTCTACACACAGAGTGGCGGAGTGTTCCACCGGGACCCTGGACTACATCCAGTCCCGCTGCCGGGAGGCCCTGTCTAACCTGAGCACAGACCCAGAAACAGGGACCCACAGCCTGCTGTCTCTGCTGCCAGCTACCCTGCAAGGCTACGAGGAGATACACAACGAGGTGGAGTTTGAATGGCTGAGGCAGTACTGGTTCCAGGGCCAGCGTTACACCCGGTTCTGCAGCTGGTGGGCCAGACCCATGGAGCAGCTGGAGAAtgactggagagagatggagctcaTGACGCAACTCTTACTGGCAgcggtagaggaagagggacaaccggaggagggcaggagagagatggcagagaCCCTGCTAACtgccctgacagacagacagcagcacagACAGACCTGGAGAGACAGGTGCCATTCCAGCCTGGCCAAGACCCTGCCCCCAGAAGAGGCCCCCGTTGACCGGCCATTTTGGGCCGACGACGACCCCAGCATGCCTCTGCCCTTTGACCTAGCTGACATCATCAACAGGGTGGAGTCACTCCTCTGGAGGATGTGACGGATGGGacacaaagaaaagagaaggagaaagagagcgagagagtcacCCCGTCATCTGAACAGCCTCTATCGTGAGGACAGACgacagaggaggagaacaggacCTACCAACTCCTGATGGTGTCAACGTCCTCCAATGGGGGTAGACTTCCCCACCCCAGCCCACCCTGGACCCCTCCCAACCCTGTACCTCGCCCCACCCCGCCCAAACCAGTCTCATCTATCTTTGCTTGGATTGACTCAACATGGCTGCAACATGGAGGATGAAACCCTTGTTAGCATGCTTTGCTAACATGCTATAGCTGGTATTGGAACTAGTCTCACAATGGTAACATGGATAACCTGCAGAATTAAAACTGAATGTATAGGAATGTATTATTTCAATCAATGTTCTGTTTCTTTTCTACATTTAACCAGCGTTGTGTATGGATATGACAAATagtcatacagatgtaggatcttcatttgaccagtttctcacagcagcaaaattatcctgcagcaacaggaaatgtgaattattgggtggattataattaatggacatttttgtaagggttgatacatttttacttagggcaaatcaagtctgacattttcatGTGGAAATTACAAACAGAAATCCTTTTAAACCTTTTAAGCCTTGAatgcactacaagtttgcatttccttgCTGCGCAGGAaatttcctgcaacaacagggtgatcaaattaaaatcctataTCTGTAGTACATTTATACTTTCTGTTTCTAACTCAATGTTGTTCTAATTATACTGTTGTATCCTAATGTCCATTCACTTCCTGTATTTCACAACTTTCTTGTTCAGAATCTCACAGGGCATGACTTTGTGTTACCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU619889 lncRNA upstream 28306 76858892 ~ 76859126 (+) True G547534
TU619883 lncRNA upstream 45457 76841500 ~ 76841975 (+) True G547528
TU619882 lncRNA upstream 49576 76837648 ~ 76837856 (+) True G547527
TU619866 lncRNA upstream 68201 76818961 ~ 76819231 (+) True G547514
TU619807 lncRNA upstream 116082 76771081 ~ 76771350 (+) True G547455
TU619874 lncRNA downstream 107 77036420 ~ 77038391 (+) False LOC110526968
TU619875 lncRNA downstream 107 77036420 ~ 77038391 (+) True LOC110526968
TU620145 lncRNA downstream 34218 77070531 ~ 77070771 (+) True G547757
TU620217 lncRNA downstream 78807 77115120 ~ 77115366 (+) True G547800
TU620220 lncRNA downstream 80173 77116486 ~ 77116711 (+) True G547803
XR_005052241.1 mRNA upstream 267311 76604690 ~ 76620121 (+) False LOC118964933
XR_005052242.1 mRNA upstream 267311 76604690 ~ 76620121 (+) False LOC118964933
XR_005052240.1 mRNA upstream 267311 76604692 ~ 76620121 (+) False LOC118964933
XM_021607700.2 mRNA upstream 1072201 75779416 ~ 75815231 (+) False cylda
XM_021607702.2 mRNA upstream 1072201 75779420 ~ 75815231 (+) False cylda
XM_021607721.2 mRNA downstream 459440 77495753 ~ 77499433 (+) True irx5a
XM_021607726.2 mRNA downstream 687512 77723825 ~ 77730489 (+) False LOC110526613
XM_021607725.2 mRNA downstream 687513 77723826 ~ 77730487 (+) False LOC110526613
XM_021607724.2 mRNA downstream 687513 77723826 ~ 77730488 (+) True LOC110526613
XM_021607728.2 mRNA downstream 778067 77814380 ~ 77847797 (+) False LOC110526614
TU618729 other upstream 916758 75928228 ~ 75970674 (+) True G546464
TU617795 other upstream 1464680 75421861 ~ 75422752 (+) True G545601
TU617662 other upstream 1649268 75237800 ~ 75238164 (+) True G545485
TU616612 other upstream 2599294 74287778 ~ 74288138 (+) True G544565
TU615384 other upstream 3499745 73372805 ~ 73387687 (+) False LOC100136290
TU620306 other downstream 241679 77277992 ~ 77279354 (+) True G547884
TU620456 other downstream 476296 77512609 ~ 77523423 (+) True G548000
TU620974 other downstream 778062 77814375 ~ 77817061 (+) True LOC110526614
TU620991 other downstream 825755 77862068 ~ 77865868 (+) False LOC110526615
TU621269 other downstream 1384547 78420860 ~ 78496470 (+) True G548703

Expression Profile