RNA id: TU619874


Basic Information

Item Value
RNA id TU619874
length 1903
lncRNA type sense_over
GC content 0.46
exon number 2
gene id LOC110526968
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 76827001 ~ 77038395 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatgtgtgccactgcagtatttacagtatgtgaaattgtatgtgtgtgaagCAGTATGATAGGGCCTGTAGCAGGGCTGGGAGATGTTTGTGTTAGAGAGGAAAGGACACGAGTCTAGTAGGCATGTCTCTGTCTGCAGGCCTGTCTCTAGTCTGCTCTGTAGGACTGAAAGGCAGCCCAGGCAGACAGCTACTGTAGGGCTGAAAGGCAGCCCAGGCAGACAGCTACTGTAGGGCTGAAAGGCAGCCAAGGCAGACAGCTACTGTAGGGCTGAAAGGCAGCCCAGGCAGACAGCTACTGTAGGGCTGAAAGGCAGCCCAGGCAGACAGCTACTGTAGGGCTGAAAGGCAGCCCAGGCAGACAGTTTATGTAGGTCTGAAAGGTAGCCCAGACAGACAGCTACTGTAGGGCTGAAAGGCAGCCCAGACAGACAGCTACTGTAGGGCTGAAAGGCAGCCCAGGCAGACAGCTACTGTAGGGCTGAAAGGCAGCCCAGACAGACAGCTACTGTAGGGCTGAAAGGCAGCCCAGACAGACAGCTACTGTAGGGCTGAAAGGCAGCCCAGGCAGACAGCTACTGTAGGGCTGAAAGGCAGCCCAGACAGACAGTTTATGTAGGACTGAAAGGCAGCCCAGACAGACAGTTTATGTATGGCTGAAAGGCAGCCCAGGCAGGCAGTTTTTTTAGGGCTGAAAGGCAGCCCAGACAGACAGTTTATTTAGGGCTGAAAGGCAGCCCAGGCAGGCAGTTTTTTTAGGGCTGAAAGGCAGCCCAGGCAGGCAGTTTGTGTAAGGCTGAAAGGCAGCCCAGGCAGGCAGTTTGTGTAGGGCTGAAAGGCAGCCCAGGCACGCAGTTTGTGTAGGGCTGAAAGGCAGCCCAGGCAGACAGCTACTATAATGTGTGGCTGATAGAAGGATCCCCATCCTAACTGCCACTCTGTCTTCATAATTGCAGCTGTTCAATGGCTTTTAATTAGTCTTAAAGCGTGTAGAGCACCACTTTCCCTGTATCGCTGCAGGCCTGAAACTCAGATCCACGGCTTCTGACAAAACCAACCAGGAAAGAGAAGCTATGGGTGGAAATGTGATGGTTGTCAATGCCAAGCAGAGCAGCCTTCTTTTTTATTTCTTAGTAACACTTTATTTccgggatcatcaactagattcagccgcgggacgaattacaaatcatttttagactgcaaattgaccccaAGAAGCCTAAACggataatatttgactaaaacataataatttcaaaccttgctcaCGTTTGTACACGATTACTTGTCTcactattatgcgtgggaatacttgggaatttaaaaaaaaaatcttattttattattattttgctTCGAAAActtgggggccaaataaaaccacccgcggGCTGCAGTTGTGCAGCTGCTTTCTTTGACCTGGCCACCATAATGCCTTTATAACAATGTTGTAAACATGTCATAATGCTTCATAGCTTGTGTCATTGTCATAACTGAAGCTTTATGGCATGTGTTGACATGTTATGACTCGTGGTATGAAGCTTTATAACATGGTTAGGACATTTTTATGAAGGGTTATGAAGAGCTCATGGTGTTTAGTTCAAATGAAGTCTTACCAATTTCTTTATCTATATATATCAACAGGAAGTATAACTGATATGTAGTGTTAAAAATCCACTTCTCAAAGTTGTTTTTTACTTCTGGAGGTTTTTCCTATTTCAAATGTTAACAGTTGCCAAAATGTTGTTCTCTTGCTTAATCTTTTTGTATGTTGACTGAGGTTGAGATTGTAGACTGGCTGTATTGTTGAGTTGAACAACTATGTGCTCTCTGTTTCACCGCTCAGCTTGTCTGTCTGAAGCTTTAGGAAGGCAGTAAATAAACCAAGACAGTGTTTTATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU619997 lncRNA upstream 5472 77029759 ~ 77030948 (+) True G547626
TU619991 lncRNA upstream 13866 77021168 ~ 77022554 (+) True G547621
TU619974 lncRNA upstream 38659 76997151 ~ 76997761 (+) True G547604
TU619877 lncRNA upstream 95573 76887579 ~ 76940847 (+) False LOC110526968
TU619927 lncRNA upstream 103535 76916482 ~ 76932885 (+) True G547562
TU620145 lncRNA downstream 32140 77070531 ~ 77070771 (+) True G547757
TU620217 lncRNA downstream 76729 77115120 ~ 77115366 (+) True G547800
TU620220 lncRNA downstream 78095 77116486 ~ 77116711 (+) True G547803
TU620227 lncRNA downstream 96746 77135137 ~ 77135346 (+) True G547810
TU620253 lncRNA downstream 150279 77188670 ~ 77188881 (+) True G547835
XM_036980994.1 mRNA upstream 86260 76827001 ~ 76950160 (+) False LOC110526968
XR_005052241.1 mRNA upstream 416299 76604690 ~ 76620121 (+) False LOC118964933
XR_005052242.1 mRNA upstream 416299 76604690 ~ 76620121 (+) False LOC118964933
XR_005052240.1 mRNA upstream 416299 76604692 ~ 76620121 (+) False LOC118964933
XM_021607701.2 mRNA upstream 1221189 75779421 ~ 75815231 (+) True cylda
XM_021607721.2 mRNA downstream 457362 77495753 ~ 77499433 (+) True irx5a
XM_021607726.2 mRNA downstream 685434 77723825 ~ 77730489 (+) False LOC110526613
XM_021607725.2 mRNA downstream 685435 77723826 ~ 77730487 (+) False LOC110526613
XM_021607724.2 mRNA downstream 685435 77723826 ~ 77730488 (+) True LOC110526613
XM_021607728.2 mRNA downstream 775989 77814380 ~ 77847797 (+) False LOC110526614
TU619876 other upstream 107 76887432 ~ 77036313 (+) False LOC110526968
TU618729 other upstream 1065746 75928228 ~ 75970674 (+) True G546464
TU617795 other upstream 1613668 75421861 ~ 75422752 (+) True G545601
TU617662 other upstream 1798256 75237800 ~ 75238164 (+) True G545485
TU616612 other upstream 2748282 74287778 ~ 74288138 (+) True G544565
TU620306 other downstream 239601 77277992 ~ 77279354 (+) True G547884
TU620456 other downstream 474218 77512609 ~ 77523423 (+) True G548000
TU620974 other downstream 775984 77814375 ~ 77817061 (+) True LOC110526614
TU620991 other downstream 823677 77862068 ~ 77865868 (+) False LOC110526615
TU621269 other downstream 1382469 78420860 ~ 78496470 (+) True G548703

Expression Profile