RNA id: XM_021607721.2


Basic Information

Item Value
RNA id XM_021607721.2
length 2153
RNA type mRNA
GC content 0.48
exon number 4
gene id irx5a
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 77495753 ~ 77499433 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agcgtggagaaaaaagaaaacatggagagagagagagagataggcagggCTGTGGTATTAACCCAGCATAGGCTTGCCTTTTCCTTCGATGACTACACCCCGATAGGAGGAGCGTGAAGAACGTAGTAGGCGTCAGAATCCTCAATTTCCAACTTAGCATCTTGGCAGGACATTTTCCCAAGCAAAGCCCCCATCCGAAGGCAAAAAACTTCTTCTGCACGGCATGAGACAGAgtgagcaagtgagagagagataggaaaaaTAGAGCGTAGCAAGCAAACACAACGGTCAGTTGAAGCTGACTATCAGCGACAAAAAAATCTATATCTAAGTCTAtgtatttgtttatatttttgctttTTACCACAATCATTTAGAGGGGAACAGACAGCGGTCTGTTGATACGAGACTCCTATGACTGAAATCGGACAGTGCATGATAAAATAAAGAGGAAAAGTGCGCAAGTAAGTGGCTTACTTTCGGGGCTTTCACCATGGCGTATCCTCAGGGCTATTTGTACCAGCCATCCGCTTCGTTGGCGCTGTATTCATGCCCGGCGTACAGCACCAGCGTAATATCGGGACCCAGGACCGAAGAACTTGGTAGATCCTCATCTGGCTCAGCTTTTGCTCCCTATGCCGGAACTACCGCGTTCACCAGCGCTTCGCCCGGGTACAACTCCCATCTCCCGTACAGTGCGGAGGCGGGAGCGGCCGCCACATTCGCTTCATACGTGAGTTCTCCCTATGACCACACGACGGGAATGGCTGGGTCTATAGGATATCACCCCTACGCTGCTCCCCTGGGTTCATACCCCTACGGTGACCCGGCATACCGAAAAAACGCGACCCGTGATGCCACGGCCACTCTCAAAGCCTGGTTGAACGAGCACCGTAAGAACCCCTACCCCACCAAGGGGGAGAAGATCATGCTGGCCATCATCACCAAAATGACCCTCACCCAAGTTTCCACCTGGTTCGCCAACGCCAGGAGGAGGCTAAAGAAGGAGAACAAGATGACCTGGACTCCCCGAAACCGGAGCGAGGACGAGGAGGAAGACGAGAACATCGATCTGGAAAAGAATGACGACGACGAGCCTAGCAAGCCGACAGACAAGGGAGACTCGACAGACACAGAGTCAGATCATAAATTGCTGAACCCGGGGGACATAGTGTGcgacagatttaaagaggagaaTCATGGCAAAGAAACGGATCCCCTTCTGAGTGACTCGGAATTAAAAGACCAGGGGGATCGGACAGAGTTACTGCCCGAGTCTGCTAAACCCACCACCTCGTCTCCAACCGCCGTGCCTCGGGGAGGAACCGAGCTCGTTGCGCAAGACAAGCCGTCAGAAATGGGCCATGCGCCGGGCACGGTAAACAGCAACGTGACGTCTGTTATTCACTCCTCCCCATCGGCCCCTAAACCCAAACTCTGGTCCCTGGCTGAGATCGCAACGTCCTCAGACAGGTGTAAGAGCAGCCACGACGGGCCGCAGGGCCATGGGATGGGTCACAGCACAGTGATCACCACCAATGCAGCGTCACCATCACGGTCCTCCCCACAGTGCCCTCTCCCAAACAGCACAGTCCTATCCAGGCCTATCTACTACACGTCCCCTTTTTACCCGGGCTACACGAACTATGGCAGCTTTGGACATCTTCACAGTCACAACAATCACGGCTCAGGCACGGGCTCCACGGCACATTTCAATGGATTAAACCAGACTGTGTTAAATAGAGCAGAAGCTTTGGTAAGAGAAAGCCAGAAAGGCAGAGGCCAAACGCAGGTAGATCTTTGTAAAGACTCCCCTTATGAACTAAAGAAAGGTATGTCAAACATTTAATACCTTGATCCCTTTCAAAAATCCATCggacttttatttattatttgtgGTTGCATtacaaaaaataagaaaaataataattataaaggAAAATTCTGAGAACAGTTATTTTCTGAGTAAATGCTTAACTTCAAATCTTAGTTTCTGAATGGTTAATCCTAATGATGTAACAAGAATGGTCTTCATCGCTGCAGCCACCTGAGTCTATTTGTATTAAAGACTAATATGTATATTTAATGTAGCATTTTTGTATTTAAAATGGACAATACACTATCTTTGAAGTAAATTATGAGAAAAAAATACA

Function

GO: NA

KEGG:

id description
K24889 IRX; iroquois-class homeodomain protein IRX

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU620419 lncRNA upstream 15937 77479605 ~ 77479816 (+) True G547980
TU620400 lncRNA upstream 58722 77436159 ~ 77437031 (+) True G547963
TU620399 lncRNA upstream 61665 77433866 ~ 77434088 (+) True G547962
TU620321 lncRNA upstream 184710 77310404 ~ 77311043 (+) True G547896
TU620316 lncRNA upstream 187489 77306684 ~ 77308264 (+) True G547892
TU620483 lncRNA downstream 46924 77546357 ~ 77548387 (+) True G548024
TU620493 lncRNA downstream 68880 77568313 ~ 77568950 (+) True G548033
TU620818 lncRNA downstream 150148 77649581 ~ 77649791 (+) True G548315
TU620820 lncRNA downstream 151562 77650995 ~ 77651198 (+) True G548317
TU620850 lncRNA downstream 183180 77682613 ~ 77682835 (+) True G548347
XM_036980992.1 mRNA upstream 457358 76827001 ~ 77038395 (+) False LOC110526968
XM_036980993.1 mRNA upstream 457358 76827001 ~ 77038395 (+) False LOC110526968
XM_036980994.1 mRNA upstream 545593 76827001 ~ 76950160 (+) False LOC110526968
XR_005052241.1 mRNA upstream 875632 76604690 ~ 76620121 (+) False LOC118964933
XR_005052242.1 mRNA upstream 875632 76604690 ~ 76620121 (+) False LOC118964933
XM_021607726.2 mRNA downstream 224392 77723825 ~ 77730489 (+) False LOC110526613
XM_021607725.2 mRNA downstream 224393 77723826 ~ 77730487 (+) False LOC110526613
XM_021607724.2 mRNA downstream 224393 77723826 ~ 77730488 (+) True LOC110526613
XM_021607728.2 mRNA downstream 314947 77814380 ~ 77847797 (+) False LOC110526614
XM_021607729.2 mRNA downstream 349529 77848962 ~ 77866316 (+) False LOC110526615
TU620306 other upstream 216399 77277992 ~ 77279354 (+) True G547884
TU619876 other upstream 459440 76887432 ~ 77036313 (+) False LOC110526968
TU618729 other upstream 1525079 75928228 ~ 75970674 (+) True G546464
TU617795 other upstream 2073001 75421861 ~ 75422752 (+) True G545601
TU617662 other upstream 2257589 75237800 ~ 75238164 (+) True G545485
TU620456 other downstream 13176 77512609 ~ 77523423 (+) True G548000
TU620974 other downstream 314942 77814375 ~ 77817061 (+) True LOC110526614
TU620991 other downstream 362635 77862068 ~ 77865868 (+) False LOC110526615
TU621269 other downstream 921427 78420860 ~ 78496470 (+) True G548703
TU621974 other downstream 1269823 78769256 ~ 78769907 (+) True G549342

Expression Profile