RNA id: XM_021607724.2


Basic Information

Item Value
RNA id XM_021607724.2
length 4299
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC110526613
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 77723825 ~ 77730489 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACAAAGCCGAGGGGACACGGGGAGTGCACAGAACACCTTAAGAAAACGCGATGTTAGATGTGATTGGCAAAGACATTATTCTATCCTTGCTGTCCTGTCGTTCCGGGATTACAATGACGTCACACTGATACCCTTGCATGGGTGAACGCTAAAGAACTATAGAGGCACAAATAATAGCACAAGCAGAGTCCATATCTTGCAAGTCTTACGTTATCCTTTAAGCCTTCTTCAGCTAATACAACAACCATTTTTGTACTTAATGACGCGTAATTTCATTTTCTTATCATTTCCTTCGGGGGATTATTCATATATAAAACTATCTGCGGCTGTTGGTACCAGCCTCAACTCTCCCTCCTAAGTGCAATCATCTATTATTGAGCGAGAGGCCGTGCGTGGAAATGTGTGTAAGAAGGTGGATTTGAAGTAGAATTGGTTACAATCGATCAAGGGTGAAGAATATTCCTGATGTTAACAAAAGAAGCAGCTATGTCTTTCTCTCAGTTTGGATATCCTTATAATGCAACTTCACAGTTTTTCGTGTCGGCAAACCCCAGTACGACTTGCTGCGATTCGATTTCCAGGTCGGTCTCTGACGGGACGAGCGGTACCCAGACTCCTGCTACCTTCTGCTGCCCTTCCTACGAGAACCGGCTCCTGGCCAGCACACGGACAGAGCTCAACGCGGCACTAGGGATGTATAGCTCGCCCTACGCTGCCGCGGCCGCCGCCAGCCAGAACTATGCCAGCTACTTCCCCTACAGCGCCGAGCCCTCCGCTGCTATCTACTCATCTCTGAATCCACAGTATGAAATGAAGGATGGCACAGGCACTCTGCATTCTGGCATAACTCAACCTGCCACCTACTATCCTTATGACCACTCACTGGGCCAGTACCAATATGACAGGTATGGGACTATGGACTTTAATGGGTCAGCCAGGAGGAAGAATGCCACACGTGAGACCACCAGTACCCTGAAGACATGGCTGTACGAGCACAGGAAAAACCCCTACCCCACCAAGGGTGAGAAGATCATGCTGGCCATCATCACCAAAATGACCCTCACCCAAGTTTCCACCTGGTTCGCCAACGCCAGGAGGAGGCTAAAGAAGGAGAACAAGATGACCTGGTCACCAAAGAATAAGGCTGGGGACGACAGGAAGGACGACCTGGATAAAAGTGACCAAGATTGTGTCACCAAAGATTCCAGTGAGTGTAAAGATGAGAAAGACCTTCATCTGAGTGACCTGGAGGACATGGAGGACGAGGACTGTGACAAGCTGGACAGTGACTGTGAGAAGATGGCACCCAGGGGCCCTGAGGAACAGCAGGACCTCCACAGGGCCATGTCCAGTGGTGGTGTTGGCTCTGGAGGCCTTCCAAAGAGAGACTGCAGCTCAGAgctctccctctccttgcccaACAGCTTCCACCACTCATTCCCATGTGGTATCAAGAGCCTACCCACCCTGCCCTCTCTACCCACCATGCCCTCGGATTTCCTTGATCCACTGGTGACGTCCAagcccccctccaccaccaccaccatccccacGGGCACTCACACTGTGTCCCTGTCACACTTCGAGGTGTCGGACCGGGACAAACCAAGGATCTGGTCTCTGGCGCGTACAGCGGCCACGGGGGTCATCCTGGGCTCTGCTCACCACGGGGCCCCAGAGCTCCGGACAGGGGGCATGCTGGGAGACTGCCATCTACAGGGGACCAGGCTACCAGTGGCTGGTACCAGACTGTGTGGGCCCCTCAGGGGCCTCCAGGATCCTACTAACATATCCAATGCTGAGAACCCTTTCCAGGAGGGCCCCTTGTTGCAATCTAAGGTCTATAGTGCAGGCGGCTACAACCACAAGGCCCTCCAACTGCACTGTTCCTCCTATCCTGCTCTTTCAGACTCATGCCAGTACTCCACTATTGAAGGATTCTCCAGTGGGAAGGCAGAGACAGAGCCCTCGGAACTCAGTGACACATGTGTGACCCTGCAGGATGACAAGGTCACTGCCTTCAGACCTGTTATGAAGAGGTTGATGGACACGCAGTCATTACACAGTGGGACTTTTATTTAGCCGGTATTAGGCTATGCACTATAAAGACTTGGGATGACGACGAGCACCGGACATCCTACCTACCTTACACCTGGGAACTGCGGCGCTCCGCAGTCAAAGCTCGATGAGCCCTGTCCAAACTGTGGAAGCTGCCATGATTTTGCACAACGTTGTTTTTATTGTGTTGACGATGACTTTATGCAAGACTTTGAAATGCAACGGTATGGGAACTGACGGTCAATTCATGATGTATGCAAAGGGCAATCGTAGTGTAGCAATGTTATTGATTtatttgtgtatttattatttgaTTCTCATCTGTTCATGTATTTATTTCGTATGtgtcatttaaatattttgttaCATGTATGTATTGTTTCAACTGTGGTTGTGTGCTATTTTTACCTGATTTAAGGGAGAAATACTTAGCTTGTTGTTGGTCTTTCTGTTCGCTAAAAGAGTGGGATTTATCGAGTTGTAATCGGAATTGTCTATTGCGTATGTGTCGACCTGGACAAATTGTTGATTGTGTTGTGTTCATCTCAAAGATAATTGTGAGCTTATTCTGTGTTTGCCATTCATGAAATATTTTATAAGAATGAATTTTTTCAGGAACTCCTCGTTTTTGTGTAAATATTATTTCCAGAACATTAACATTGGTTTAATCGGCCAATTAAAACATTTGAGACTGTTGCACTAGATCAAAGTTTATCTTCTTAACGTGGAGAATAATACTGGAACGTTGTTGGAaggtcataattcaatagagaacgTGAATGAACGTTACAAGGCCAGGAAGAAAGGGGACATCATCTCTCCATTGTAATTATCTAATCAGTTCTGGCATCAAACACTTTGTTACTGTTCAGACAAGCAACGAGGCAGGAATACGGGATGAATGCTGCTTTGTCTGCTGTGTAGGGAGCCGCTGCAATAATTTACTTGTGTTAATTAAAAGGTCATTTGTAGTATCAAACCCATAAAGGAACATTCACATGGTTTGTGTGGGTTAGACTTTGGTTCTACTGTTTTTGCCTGAACTTTTTCATGTATAACTGATTGATATAACACATGAGTATTAGCACAAGTATTAGGCCTGTGAGTAAAACTAAGCGATTTGTCATCATGCGTAAAACTACTAACACGAAAGCACTGGTTTCTTATTCCTGTCAACTTGAACTTTGAAGTCAGTTATTTTCAGAAAATTATAAGAAAGTTAATAGATTATATTTTACATGATTATGGGCATGCATGACATGTAATATCGCATAGCATATTGCTCACTCCACAGTAGAAAACTCGAAAAACCTTTAAACAAAATGTTGTTGAAAACACTCAACTGCAATGCAGAAATGTGGGCCTAGCCTGAGATGGATATTGTCCAGACTTTATTATCAGAGGACCAAAAGAAATGCTACTTAATAAACCAAAATAACGGTGTGACCTGCAGCGAATGACCCACAGTTTAGAGGCATGCAAATTAAGCCACCAAAAGATACACGTTATTGCAGGTCGGATTTGGAGGATTAGAGCTTGTAATAAGAGTATTAGGTATCGTATTAGGTCTATTGAAAGGAGCTGTGGTCAATGTTGTGGGCCCGGCCTATGGATGGGGATTGGGATGGGGGACCCCTCAGTAATGCATGCAATGGTGTGACTTCAATGTAACAGGGTTTGGCGTAATTCCCTAGGAAATATCGTGATGAGGAATTATGAGGACAATAATAACATAATATTTAGAGCTCTTTAATTCCAATCGTCTCCTCTCAGTCTCTTATGAATTAAGATGGTATGGTCTTAACAATGGACTTTGCATTTAGTAATCAAATTATATACATACAGGTAGGCCTAGACCTATTGCGTtatccacacacacaaaatagacCTACATAGAGGCCTGCGTAATAACAATGTTGTTACGTTTCTTTCTGTTTTATCGAATATGACTGAGAATTTGAAATAACATAAAACCTCCTCTAGAATGTACAGATAAGCAGAAGGCACACATCAACTCTTAAAAAACACTTTTAGAAAATAGAATATGTGTCATCAAACGGGCCTACTTTGCCACACTATTCAGGACAATTAATCTATTTCCATCTCTTCATATAGACAACCTTCCCGTCAAAATAAATTAAAGGGAATCTTTGCCCACGAGGCCAGATAGAATGAAGGTGCGTGATGAACATCTGCTGATAGTTCAGATACGTGGTTTTCTTTTATTAAAGGTCAACCGA

Function

GO: NA

KEGG:

id description
K24889 IRX; iroquois-class homeodomain protein IRX

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU620850 lncRNA upstream 40991 77682613 ~ 77682835 (+) True G548347
TU620820 lncRNA upstream 72628 77650995 ~ 77651198 (+) True G548317
TU620818 lncRNA upstream 74035 77649581 ~ 77649791 (+) True G548315
TU620493 lncRNA upstream 154876 77568313 ~ 77568950 (+) True G548033
TU620483 lncRNA upstream 175439 77546357 ~ 77548387 (+) True G548024
TU620956 lncRNA downstream 41962 77772450 ~ 77778738 (+) True G548441
TU620957 lncRNA downstream 45169 77775657 ~ 77778151 (+) True G548442
TU620972 lncRNA downstream 81845 77812333 ~ 77812538 (+) True G548457
TU620979 lncRNA downstream 87127 77817615 ~ 77817837 (+) True G548464
TU620981 lncRNA downstream 96738 77827226 ~ 77827884 (+) True G548466
XM_021607721.2 mRNA upstream 224393 77495753 ~ 77499433 (+) True irx5a
XM_036980992.1 mRNA upstream 685431 76827001 ~ 77038395 (+) False LOC110526968
XM_036980993.1 mRNA upstream 685431 76827001 ~ 77038395 (+) False LOC110526968
XM_036980994.1 mRNA upstream 773666 76827001 ~ 76950160 (+) False LOC110526968
XR_005052240.1 mRNA upstream 1103705 76604692 ~ 76620121 (+) False LOC118964933
XM_021607728.2 mRNA downstream 83892 77814380 ~ 77847797 (+) False LOC110526614
XM_021607729.2 mRNA downstream 118474 77848962 ~ 77866316 (+) False LOC110526615
XR_002473981.2 mRNA downstream 118474 77848962 ~ 77866316 (+) False LOC110526615
XR_005052438.1 mRNA downstream 232761 77963249 ~ 77963303 (+) True LOC118965105
XM_036980998.1 mRNA downstream 237679 77968167 ~ 78042147 (+) False LOC110526617
TU620456 other upstream 200403 77512609 ~ 77523423 (+) True G548000
TU620306 other upstream 444472 77277992 ~ 77279354 (+) True G547884
TU619876 other upstream 687513 76887432 ~ 77036313 (+) False LOC110526968
TU618729 other upstream 1753152 75928228 ~ 75970674 (+) True G546464
TU617795 other upstream 2301074 75421861 ~ 75422752 (+) True G545601
TU620974 other downstream 83887 77814375 ~ 77817061 (+) True LOC110526614
TU620991 other downstream 131580 77862068 ~ 77865868 (+) False LOC110526615
TU621269 other downstream 690372 78420860 ~ 78496470 (+) True G548703
TU621974 other downstream 1038768 78769256 ~ 78769907 (+) True G549342
TU621977 other downstream 1041624 78772112 ~ 78772557 (+) True G549345

Expression Profile