RNA id: TU620991


Basic Information

Item Value
RNA id TU620991
length 1678
RNA type TUCP
GC content 0.41
exon number 4
gene id LOC110526615
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 77848962 ~ 77866316 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTCCACTGAATGCAATGTGTAGTCTGGCTTTGTTAACTGATACGTagctgtcactctgtctctctaggATGGAGATGGCACCATTGACTTCAGAGAGTATGTCATCGGTGTAACCATCTTATGTCGGCCAGCTAACACCGAAGAGGTCCTCCGCACAGCTTTCCAGctgtTTGACACTGACGAGGACCAAAGAATCACTCATGAAGagttctcctccatgcttcgctCTGCTCTAGGCGTGTGTGACCTCAACGTCTCCAAACTCTTTAAGGAGATAGATACAGACAGCTCTGAATTCATCACTTTCTCCGAGTTCCAGGCGTTTGCCCTGAACCACCCAGAGTATGCCAAGCTGTTCACCACCTATCTGGAGCTCCAGCGGTACCAGGCCCTCCAGGGGGTGGAGTCAGAACTCTCTTCCACCAATCATGTCTCCTCTGAGGACAACCAGGAAGAGAGCATCTCTGACAAGAAGGACGACTAAGTCTGAGGCAGAGACTGTCATTGTGTTTGAGAGCATTACCATACATTTTGTTCAGTAGCTGATCACGGACTGAGCAAACTGACTGATCTACTGTTAATAATACAGTTATTTAAGATCCAAGGTGATTTGTTGATCAGTAAGTCTGCAGTTGCCGACTGCAATGTTGTCGATCTAGATCATGTACAGAGACTGAACTCTTTTTGAGCTCTCAGTTGAATACACAGAGAGACGAACTACTGAGTCTGATGAACCACAACAGGATATTTTCTATTGCACTGATTTTAGAGAACTGGAACCTCATTTTGACCTCATAGGAAATAAGATGATGTATGTTTAAATTAATGTTGCTATTCTGCAAAAGTGAATCATATTTTTTGCTTAAATTCTTTCTATGATTTTTTAGTGCCTTAAAAAAGATTTGTAAGTGAGGTTTGTAAGAgctattgtttgtgtttctgtacagATGGGGTGGAATCAGACCTCCAAGTATATTTTTTCAGATCCTTGTTTATGGCAGTAATGTGGTCATAGGAAGGTTGAACAATATCCACTTAATCCTAACGCTTTTAGGATTTTACTCATAGCAATGTTGAACTTTTTTGTAGATACCCCTGCTGATTTTGATTTAAGGCATCCCATTGTTTTGTCATAGTTTTGCCTCTTCAGATGAAAACTACCTAGTGCCAGCCCATAATGTATTTAAATGACCTGGATACCCTTCTGAGATGACTGTATCCTGTACTCTTTAATGTGTCTACCTGTTCTGTTTTCCACAGAGTTTCCTTGAAGATAACTGGAAAGGCTGCCAAACGTTGCTTTTGTATGAGTTGAAAGTCTTTAATGTATGACTGGATTGCAGAAAATTGTCATTAATACATTTTTCTAATGATATCAACCCAATCTGGCAACCCAGCAAAGGAGCAATAATACAAGCTATAAGGATACATGCTGTGCTTTACAGTTTTTCCACTGCTCAGGGACACACACTGTAAGTAGTGCTGCTGTATAATTAGCTAAAGGTTTTGCTCTGCATCTGTTTCTATTTGCATTTCCATTGAAGAGTGATGTTGCTGAGGCAGCAGTGGAACCTTATGGCTTTAGCCAAACTAAAGCCCAAGCATCTACTGAAAAATAAGGCAATTTGTGAGCAAAAAGGCAAGTCTGCCTAGTAATACATACCCCCTGGAATACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU620995 lncRNA upstream 4341 77856801 ~ 77857727 (+) True G548472
TU620987 lncRNA upstream 10607 77849096 ~ 77851461 (+) False LOC110526615
TU620990 lncRNA upstream 10607 77849096 ~ 77851461 (+) False LOC110526615
TU620982 lncRNA upstream 30392 77830897 ~ 77831676 (+) True G548467
TU620981 lncRNA upstream 34184 77827226 ~ 77827884 (+) True G548466
TU621022 lncRNA downstream 68210 77934078 ~ 77935551 (+) True G548498
TU621123 lncRNA downstream 251223 78117091 ~ 78117850 (+) True G548570
TU621117 lncRNA downstream 254921 78120789 ~ 78127406 (+) False LOC110526621
TU621118 lncRNA downstream 254921 78120789 ~ 78127406 (+) False LOC110526621
TU621119 lncRNA downstream 256541 78122409 ~ 78127406 (+) False LOC110526621
XM_021607728.2 mRNA upstream 14271 77814380 ~ 77847797 (+) False LOC110526614
XM_021607726.2 mRNA upstream 131579 77723825 ~ 77730489 (+) False LOC110526613
XM_021607724.2 mRNA upstream 131580 77723826 ~ 77730488 (+) True LOC110526613
XM_021607725.2 mRNA upstream 131581 77723826 ~ 77730487 (+) False LOC110526613
XM_021607721.2 mRNA upstream 362635 77495753 ~ 77499433 (+) True irx5a
XR_005052438.1 mRNA downstream 97381 77963249 ~ 77963303 (+) True LOC118965105
XM_036980998.1 mRNA downstream 102299 77968167 ~ 78042147 (+) False LOC110526617
XM_036980997.1 mRNA downstream 106962 77972830 ~ 78040880 (+) False LOC110526617
XM_021607733.2 mRNA downstream 106966 77972834 ~ 78042147 (+) False LOC110526617
XM_021607734.2 mRNA downstream 134589 78000457 ~ 78042147 (+) False LOC110526617
TU620974 other upstream 45007 77814375 ~ 77817061 (+) True LOC110526614
TU620456 other upstream 338645 77512609 ~ 77523423 (+) True G548000
TU620306 other upstream 582714 77277992 ~ 77279354 (+) True G547884
TU619876 other upstream 825755 76887432 ~ 77036313 (+) False LOC110526968
TU618729 other upstream 1891394 75928228 ~ 75970674 (+) True G546464
TU621269 other downstream 554992 78420860 ~ 78496470 (+) True G548703
TU621974 other downstream 903388 78769256 ~ 78769907 (+) True G549342
TU621977 other downstream 906244 78772112 ~ 78772557 (+) True G549345
TU622349 other downstream 1285496 79151364 ~ 79163031 (+) False LOC110526645
TU622771 other downstream 1613613 79479481 ~ 79480078 (+) True G550054

Expression Profile