RNA id: XM_021607749.2


Basic Information

Item Value
RNA id XM_021607749.2
length 2523
RNA type mRNA
GC content 0.48
exon number 5
gene id LOC110526623
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 78220534 ~ 78224155 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGAATTAAAtgtttgaaaaaaaaatacagtcCGGTAAAAACGTATTTCACGGAAGCATTTGATAAATTATACACTATAATGAAATACAACAGAAACGATATTGTCTATTTTTTGGTGAAGACGTGCACCAGCTGATTCCTCCTATCTAACTTACCATCAGAATGCAGTCTGTGAAGGTCGGCTACTCAGTGTTGTTTACGTTGATATCAAAACACAACTACTCGTCCTCGGGTCATTTCAGAGCACTAGCATGTATTCATGGTACAATCAGTTCAGCCTGTACTGTCCATCCCATGTCAACCACAGCACAGCCTGTGGTCATTCGCATTCCCAGACACATGCAGGAGCAGGTAGAAAATGTGAAGCAAGTGAGAGGCAAGAACAAAGTCATCACCATCAAGGCTGGCAAACTCCTAATCAAAAGCAAGAACCCAGAACTGAATCAGTCCGCAGGCTACACACTTGGGAAATTTGAGCATTCCCATCTCTCATCCAAAGGATGGAAACACAACAGATCATTTGGTGACTACTTCAAGGTTAACAACACTCAGCGTACTCCACCCGTTGTCACTGAAATCCAGGATGAGGAGGGTGACAAACTCAAAGAGAAGAGTAAACCTATTACATGGTTTGGCCAGGCTGTGGCCAGGAGCCTGTGGGGCCCATTCAGGCTCATGGTGAAGACAGTGGGAGGTGGGAGAGGTGTGGGCAACATCAAGCTGGCCTTCACCAAGGGTCCCCCAGATGTGTTGGTGGCCACACCTGGTGCCCTCGCCAAGGCCCTGCGGAAACGCTATCtCCCCAAGCTGAGCTTCATGGTGGTGGATGAGGCAGACACAATGTTTGATCCCAGCTTCTCTGGCATGCTGGAGAGCATCCTGGCCCAGACCCGTGCGGCCTGTGACCCCTCAGAGACCCAGGGCCCCGGCTCCACCCGCAAGGCCcagctggtggtggtgggggccACGTTCCCCGGTGGGGTCGGAGAGGTTCTCAGCCAGGTGAGGGACCTGGGAGGCATGGTGACTATCAAGAGCAAGAATCTTCACTTCCTCATGCCACATGTAAAACAGACCTTCCTGAAGGTGAGGGGAGCTGACAAGCTTCTGGAGCTCCACCAGGTGCTGAAGGCAGCAGAGCAGGACAAGGCTGGGGTGTTGGTGTTCTGTAACCGGGCTTCTACAGTCAACTGGCTGGGCTACTCCCTGGAGGACATGGGGCTGAGACACGTCCGACTGCAGGGGGAGATGCCTGCCTCCCTCCGGGCTGGAATCTTCCACTCCTTCCAGAAGGGACAGGTAGACGTGCTGATCTGTACCGACATCACTTCCCGAGGACTGGACACCCAGAGGGTCTGTCTGGTGGTCAATTACGACTTCCCAGAATCCCACACGGACTACATCCACCGGGCGGGGCGGGTGGGCCGGGTAGGGAGTATGGAGGATGGGGAGGTGCTCAGCTTCGTCACCCACCCCTGGGATGTGGAGCTGGTGCAGAAGATTGAGACGGCTGCCCGGAGGAGGACAAGTCTGCCTGGGATGGAGTCCTCCATCAGGAAGCCTGAGCCCAAAGCAgccgaagaggaggaggaagaagaggggttGCTCTACTAGTGGGTCTGCCACAAATAAGGATATTACCAAAGCAGAACTAACTTGTTTGATTAATTTGTTCAGTAAAATGATTGTATCCAGGATAGCCCGAACCAGCTGTGTGAGACTGAATCCTTTGTCTCCAACACAGGCATGATCATCTTTTAATTTGACCTTTTTAGATGCCATATCATGTTTGAGACTGGAACTATGATCTGACTTCTCTTTTTAAACCAGATGGTTACCGCATGTCATTCCAAAGAGGAAATGTCTTTGGTAATGTACAAAAATCATGCCCTCTTTATAAGCAGCAGGTGTGCGGCACATGTTTGCACTTCTCACGGGTAATCACGGGGTGGCAGTATTTACTTTATTTGACCTGTCATACAGCAGTCATACAATAACCAGAGAAGGGCTATGGCCGAATATAGTCTTATTTTAATGCTCATCCACATGGGGCAAGCCCTTCTTTTATGGAATTTAACTCAGCCATACTAACTTGTTTTGGTAAAACATAGGTTAAAGAATCTAAAAAAACATTTAGAACAAGTATGGAATACCGATTTTACTTTTCCTTCCAGAAATGAAAATAATTTCCTTAAAAGAAAGAGTAACTCATGTAACCCTTCATGTATCTGGTAGGGTGCCACTGAGACAACGGTGCTAATCTCTTCTCACTAACCACAGGTAGACCCACATTAGCATATTACGTTTTGGAAAGTGGTCTTCACTCAGTTTCTGCTTTTGTGTGTAATACAGAAGCACGACATTAAAACCTCCATATGTAGAAATGTCCATTAATCTACAGTCAAGTTGGATTCAGGCCCTAGCCTTGAAGTCTATCCCATTGATGCCTGCGGTTACTTGTTTTAGAGGAAGCAAGATGTTTGAACATGATAATGTGTCGGAGTGAAAATAAATCTCTGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU621126 lncRNA upstream 32367 78128193 ~ 78188167 (+) True G548573
TU621117 lncRNA upstream 93128 78120789 ~ 78127406 (+) False LOC110526621
TU621118 lncRNA upstream 93128 78120789 ~ 78127406 (+) False LOC110526621
TU621119 lncRNA upstream 93128 78122409 ~ 78127406 (+) False LOC110526621
TU621122 lncRNA upstream 93128 78122409 ~ 78127406 (+) True LOC110526621
TU621200 lncRNA downstream 23581 78247736 ~ 78248253 (+) True G548642
TU621187 lncRNA downstream 127853 78352008 ~ 78409500 (+) True G548629
TU621364 lncRNA downstream 317138 78541293 ~ 78541498 (+) True G548788
TU621828 lncRNA downstream 323149 78547304 ~ 78547608 (+) True G549207
TU621835 lncRNA downstream 329343 78553498 ~ 78553802 (+) True G549214
XM_036981001.1 mRNA upstream 93108 78103895 ~ 78127426 (+) False LOC110526621
XR_005052243.1 mRNA upstream 93108 78103895 ~ 78127426 (+) False LOC110526621
XM_036981002.1 mRNA upstream 93108 78103896 ~ 78127426 (+) False LOC110526621
XM_021607739.2 mRNA upstream 130233 78088907 ~ 78090301 (+) True LOC110526620
LOC110525051 mRNA upstream 131788 78087216 ~ 78088746 (+) True LOC110525051
XM_036981005.1 mRNA downstream 2208 78226363 ~ 78358769 (+) False LOC110526624
XM_036981006.1 mRNA downstream 2210 78226365 ~ 78358769 (+) False LOC110526624
XM_036981004.1 mRNA downstream 3019 78227174 ~ 78358769 (+) False LOC110526624
XM_036981007.1 mRNA downstream 3019 78227174 ~ 78358769 (+) False LOC110526624
XM_036981008.1 mRNA downstream 3019 78227174 ~ 78358769 (+) True LOC110526624
TU620991 other upstream 354666 77862068 ~ 77865868 (+) False LOC110526615
TU620974 other upstream 403473 77814375 ~ 77817061 (+) True LOC110526614
TU620456 other upstream 697111 77512609 ~ 77523423 (+) True G548000
TU620306 other upstream 941180 77277992 ~ 77279354 (+) True G547884
TU619876 other upstream 1184221 76887432 ~ 77036313 (+) False LOC110526968
TU621269 other downstream 196705 78420860 ~ 78496470 (+) True G548703
TU621974 other downstream 545101 78769256 ~ 78769907 (+) True G549342
TU621977 other downstream 547957 78772112 ~ 78772557 (+) True G549345
TU622349 other downstream 927209 79151364 ~ 79163031 (+) False LOC110526645
TU622771 other downstream 1255326 79479481 ~ 79480078 (+) True G550054

Expression Profile