RNA id: XM_021607760.2


Basic Information

Item Value
RNA id XM_021607760.2
length 1448
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC110526630
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 78366733 ~ 78379992 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAGGACCCGCGGAAGATAGCAGCTGGCGTCGTTTCCCCAAAAAGTATTTGGTATCCATGGGGATCCAGTAACTCCTCTGCTATAGTACATATTTGACAAACTATAGTCGGCTCGAGCTTGCACTCCAGCTTCACGTTCAGTGTGGTTCAGACGCGCGGAGCTTCTCAGCGTTTTAACTCAGTTGGTTTTTTGTCAGTTGGTGAGGCCACCCCAACAACACAGCAGTCATGGACGCCATCAAGAAGAAGATGCAGATGCTTAAACTCGACAAGGAGAATGCCCTGGACAGAGCTGAGGGAGCTGAGGGAGACAAGAAGGCAGCGGAGGACAAGAGCAAACAGCTTGAGGATGACCTGGTAGCGCTGCAGAAGAAGCTGAAGGGAACAGAGGATGAGTTGGACAAGTACTCTGAGTCTCTTAAGGATGCCCAGGAGAAACTTGAACTCGCTGAGAAGAAAGCCACAGACGCCGAGGCTGATGTAGCTTCCCTGAACAGACGTATCCAACTGGTTGAGGAGGAGTTGGATCGTGCTCAGGAGCGTCTGGCCACAGCTCTGACCAAGCTGGAGGAGGCTGAGAAGGCTGCTGATGAGAGTGAGAGAGGCATGAAGGTGATTGAAAACAGAGCATCGAAAGATGAGGAGAAGATGGAGCTGCAGGAGATCCAGCTGAAGGAGGCTAAGCACATTGCTGAGGAGGCTGACAGGAAATACGAGGAGGTCGCCCGTAAGCTGGTCATCATTGAGAGTGATCTGGAACGTACAGAGGAGCGTGCTGAGCTCTCTGAAGGCAAATGCGCTGAGCTTGAGGAAGAGTTGAAGACGGTCACAAACAACCTGAAGTCTCTTGAGGCTCAGGCAGAGAAGTACTCACAGAAGGAGGACAAGTACGAGGAGGAGATCAATGTTCTCACAGACAAGCTAAAGGAGGCTGAGACCCGTGCTGAGTTCGCTGAGAGGTCCGTGGCCAAGCTTGAGAAGACCATTGATGATCTGGAGGATGAGTTGTATGCACAGAAGCTAAAGTACAAGGCCATCAGCGAGGAGCTGGACCACGCCCTCAACGACATGACCTCCATTTAACTTGTTTACATCATCTCACAACCATCACAGACGCCACCCGCTGGTTGAGAGGCCTCTCTACTACAACTATGTGGCAGTATCGCCCAACATCCTGTCCCCTATGTCTCCACATCTCTTCTTTACCACAGCACCACCGCACATTGggcctctgctgctgctgtcatCCTATAGACCACCTTTTGTACAGAACCCTGACTCATTTTGCTTTCTGTAAAATAAACTTTACATCCATCCATGTCAGCCATCCTTACCCTTCAAATCTGTAGTTCTTAATTTCCTTTATTTCATTTCCTGTCTTTAAATGTTTCTCTGTTTAATTTATTACTGAGCAGCTTTGAATAAAACCGAAAGCTCCTCTtcacaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU621200 lncRNA upstream 118481 78247736 ~ 78248253 (+) True G548642
TU621126 lncRNA upstream 178567 78128193 ~ 78188167 (+) True G548573
TU621118 lncRNA upstream 239328 78120789 ~ 78127406 (+) False LOC110526621
TU621364 lncRNA downstream 163549 78541293 ~ 78541498 (+) True G548788
TU621828 lncRNA downstream 169560 78547304 ~ 78547608 (+) True G549207
TU621835 lncRNA downstream 175754 78553498 ~ 78553802 (+) True G549214
TU621845 lncRNA downstream 186383 78564127 ~ 78564333 (+) True G549224
TU621848 lncRNA downstream 189606 78567350 ~ 78567580 (+) True G549227
XM_036981005.1 mRNA upstream 7965 78226363 ~ 78358769 (+) False LOC110526624
XM_021607759.2 mRNA downstream 3640 78381384 ~ 78389020 (+) True LOC110526629
XM_036981010.1 mRNA downstream 11714 78389458 ~ 78477958 (+) True LOC110526970
XM_021607782.2 mRNA downstream 125206 78502950 ~ 78511984 (+) False LOC110526639
XM_021607779.2 mRNA downstream 125207 78502951 ~ 78511984 (+) False LOC110526639
XM_021607780.2 mRNA downstream 125207 78502951 ~ 78511984 (+) False LOC110526639
TU620991 other upstream 500866 77862068 ~ 77865868 (+) False LOC110526615
TU620974 other upstream 549673 77814375 ~ 77817061 (+) True LOC110526614
TU620456 other upstream 843311 77512609 ~ 77523423 (+) True G548000
TU620306 other upstream 1087380 77277992 ~ 77279354 (+) True G547884
TU619876 other upstream 1330421 76887432 ~ 77036313 (+) False LOC110526968
TU621269 other downstream 43116 78420860 ~ 78496470 (+) True G548703
TU621974 other downstream 391512 78769256 ~ 78769907 (+) True G549342
TU621977 other downstream 394368 78772112 ~ 78772557 (+) True G549345
TU622349 other downstream 773620 79151364 ~ 79163031 (+) False LOC110526645
TU622771 other downstream 1101737 79479481 ~ 79480078 (+) True G550054

Expression Profile