RNA id: XM_036981012.1


Basic Information

Item Value
RNA id XM_036981012.1
length 3302
RNA type mRNA
GC content 0.42
exon number 14
gene id LOC110526640
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 78657110 ~ 78676158 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGGGTACTTCTTCCTCATTCAAGACCAATTCAAAGTTCAACAGTGGTATTGCAGTTATAACAGCTGAGGTATTCTGGAGTTGTCCttcatatatatgtatatacttttTTTTGGATCTCAATAAGGAATCTGTTAAACTGAAGTGGTTTATGTTTTTTGGAAACGTTGATAAAGAGGATATTAACATTCAACTTTGAGGAAGTGCATGTATAACACAGAATGACTCCCTTGCTGTATAAAGATGCCTTTTGGggagTTGATTTCACTAATCATCAGGGCTATGAGGTTCTTATTCAGAGACTATGTGATGGCAGGCGGATGTGCAAAGATGTGGAGGAACTGCTGAAAATGAGGGCCATGGCAGAAGAGAGGTATGGGAAGGATCTGGTGACAATAGCACGTAAAGCTGGGGGGCAGACAGAGATCAGCACTCTGAAAGCCTCCTTTGATCAACTTAAAACACAAATTGAAAACATCGGGAATCTGCATATCCAGCTATCCGGAATGTTACGGGAAGAGATCAAGAAGATGGAAATATTCAGAGAGCGGCAGAAAGAACAGAGGAGGAAGTTTGAGGGGATTATGGAGAAAGTTCAGAAGATGAAGGTGTCCTTATACAAGAAGACCATGGAGTCTAAGAAGTCCTATGAGCAGAAATGTAAAGAAGCAGACGAGGCAGAGCAGCTTGCTGACAGGAGCACCACAGCCACAACAACAAAACAGTCTGAGAAGGTACAACACAAGGCCAAGCAATGCAGACAAGCCGTCACTGAAGCAGAGAAACAATACATGTTGAACGTAGAGCAGCTGGAGAGAGTTCGTCAGGACTGGGAGGGAACACACAAGGGCACGTGTGAGGTGTTTCAGCAGCAGGAGGTGGACCGCATCACTATCCTGAGGTGTGTCCTCTGGGACCACTGTAATCACTTCTCTGTGCAATGTGTCAAAGACGACGAGttttacgaGGAGGTGAGGAATATTCTGGAGacgtgtgacatcacagcagataACAACTGTTTCATAGAGATGAAGACAACAGGTTCAAGTCCACCAGACCCCATTGTGTTTGAGAACTACTATGAGAGGGAGCCATCACCAACTGGCGACAACAACGGCAGCGCTCGCTTCGGAGGGGGAGGGGTCAGGAAAAGTTCAAAGATGAGTATCAGTGAGGGTTCAGCTTCCGAGCCAGCGGCGCCAACTGTTGGTCAAACAGTGCCTGAGAGTTCAGATGGAGTGTATGCATCCATACCTGGCTTCCAGTCTGCAGCTGCAGCTGCCCTGCCTGCAGTGACAactgatgaggatgatgatgatgataccttCATGGTGTTTTATGACTACTCTGCACAGGACCCAGATGAGCTGTCAGTGTCTAAAGGGGATGTGGTGTTGGTGATAGAACAGAGTGAAGACGGCTGGTGGACAGTGGAGAGAAACGGACAAGTTGGGCTGGTACCTGGCTCCTACCTGGCCAAAGTCTAgacatagtcacacacacattcatgcatggacacacgcacacactcatgcacacaggTACAgggattcacacacacatactcatgcaCACTCACCCATACATACTGTAGTCTTCAAAACCTTACTATGCGGACCCCTTTCTGCTTCTTACTCAGATGTTCTGATCCTTGGTTCAAGACTTCGGATTAATAGATTCTCCAGCAGTAGAGATGACTCACTGAACTGACTTGGAACATGAGTCATGACAGTGTGTTCCCCATTAACTATTAGGCTATGCTGCACCAGAGATTGTCAGTCTTTTCACCCAACAGGCCTACTGCATACATACAGTGATGTGAAAAAGTGTTCGACCCCTTTTGAATTTTCTCTACTTTTACACATTTTTTATACTGAATtgtatcagatcttcaaccaaaaccaaatattagataaagggaacctgagtgaacaaataacaacAATTGTATACTTATTTCATTTAgttcataaacaaagttatgccCGTGTGAAAAAgaaattgcccccttacactcaataactagTTGTGCCAcatttagctgcaatgactccaaccaaaagcttcctgtagttgttgatcactcacatcgctgtggaggaattttgtccCATGCTTCCATGCTTTAACTCAGAGGcgtgtgggttttcaagcatgaacttcTCGTTTCAAgacctgccacaacatctcaattgggattaggtctggactttgactaggccattccaaaacacaTGTTGCTTTTTAGCTCTTTTCATGTCGACTTGAgttttggatcgttgtcttgCTGCATAACCCAGATGcagctcacagacagatggcctgacattcttcTGTAGAATTCTGATATAGACCAGAACTCATGGTTCTTTCTATTTAATCAACtcatccaggtcctgaggcagcaaagcatacccaaaccatcacactactaccATACTTGACCGTGGGTATAAGGTTCTTACTGTAGAATGCAGTGTTTGGATTTCGCTAGACATAATGGAacccatgtcatccaaaaagttatacttttgactcatctgtccatagaacattcaagagtcttgatgatcatgcATGTGCTTTTTTGCAAACTTGAATCAACTTTTTGGATGATATGGATCCCATTTTTTTGTTTTGGAAttgcctagtcaaagtccagacctaatcccaattttgatgttgtggcaggacttgaaacaaacaattcatgcttgaaaacccacaaatgtcactgagttaaagcagtactgcatgcaagagtgggccAACATTCCTCCACAGCAATGTGAgactgatcaactacaggaagcatttggttgcagtcattgtaGCTACAGGTGGCACAAACAGTTATTGAGCGTtggggggcaattactttttcacacaggggaattgaaTAACTTTAATTAAATAagtaaaataaatattaaatttGTCGTAATTTGTAAACTCCGGCCCTTtaatctaatattaggttttggttgaagatctgaaaACTTTCAGTATCAAAAACATGAAAAAGTACaaatcagaaagggggcaaatactttttcacagcactgtagaGAATCTCAGATACCATACAGAAAACAAGTCAAACTTCCAACTGTATCAATTGTAAATATGTGTGAGGATAAAATAACTGCACTGGTCTACACCAACCTGAGAAGTGATCTACAAGAGAAAGTAGAAAAGTATCTGAATCAAGACCAACAGCTGTACTGTATTTGATGTGATATTTGATGAATAAAATATGTAATGTTTACTTTGAAGTTTCCTTAGTTTGGATACATTGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU621894 lncRNA upstream 6709 78650178 ~ 78650401 (+) True G549272
TU621893 lncRNA upstream 15647 78641259 ~ 78641463 (+) True G549271
TU621868 lncRNA upstream 73666 78583159 ~ 78583444 (+) True G549247
TU621850 lncRNA upstream 88416 78567767 ~ 78568694 (+) True G549229
TU621848 lncRNA upstream 89530 78567350 ~ 78567580 (+) True G549227
TU621904 lncRNA downstream 3782 78679940 ~ 78683378 (+) True G549280
TU621921 lncRNA downstream 9129 78685287 ~ 78685488 (+) True G549296
TU621922 lncRNA downstream 12183 78688341 ~ 78688628 (+) True G549297
TU621923 lncRNA downstream 12514 78688672 ~ 78688894 (+) True G549298
TU621929 lncRNA downstream 25197 78701355 ~ 78701638 (+) True G549304
XM_021607782.2 mRNA upstream 145126 78502950 ~ 78511984 (+) False LOC110526639
XM_036981014.1 mRNA downstream 87449 78763607 ~ 78909337 (+) False LOC110506124
XM_036981784.1 mRNA downstream 413434 79089592 ~ 79354959 (+) False LOC110526645
XM_021586631.2 mRNA downstream 848651 79524809 ~ 79531505 (+) False LOC110506775
XM_021586632.2 mRNA downstream 848651 79524809 ~ 79531505 (+) False LOC110506775
XM_036981020.1 mRNA downstream 866921 79543079 ~ 79570938 (+) True LOC110506774
TU621269 other upstream 160640 78420860 ~ 78496470 (+) True G548703
TU620991 other upstream 791242 77862068 ~ 77865868 (+) False LOC110526615
TU620974 other upstream 840049 77814375 ~ 77817061 (+) True LOC110526614
TU620456 other upstream 1133687 77512609 ~ 77523423 (+) True G548000
TU620306 other upstream 1377756 77277992 ~ 77279354 (+) True G547884
TU621974 other downstream 93098 78769256 ~ 78769907 (+) True G549342
TU621977 other downstream 95954 78772112 ~ 78772557 (+) True G549345
TU622349 other downstream 475206 79151364 ~ 79163031 (+) False LOC110526645
TU622771 other downstream 803323 79479481 ~ 79480078 (+) True G550054
TU622790 other downstream 895721 79571879 ~ 79577990 (+) False LOC118936661

Expression Profile