RNA id: XM_036981063.1


Basic Information

Item Value
RNA id XM_036981063.1
length 1998
RNA type mRNA
GC content 0.49
exon number 12
gene id LOC110526647
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 79672029 ~ 79699222 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatgagtctctctctctctctcactcacactcacactctctaacacacacacacacacatacacaaaatagcaATGCTCCCTTCAGGTGAATCGataacagtgtgtatgtgtgttatttcTCATACCTGAATGTTGACACTGTGTTCCTTTTCTCCTCTATACAGGTCTGTGGTTAATCAGCTGCAGCCATGTGTGACCAGACGTTTTTGGCCATCACTTTCGGGCCGTGTGACAGCTGCTCAGAGAACCGCCCCTTGATGAATCTATACATCAAGACTGAACCCATCAACTACTGCTCACTATGCATGGAGATTATGGCGTGCCAGGGCCTTGCGAGCGGCGAGACTCTGAAGTCGCTGAAGGCCGAGAGCGAGACGCTGAGGAAGAAGCTCGAGGAGGAGCGGAAGAAGCTGCACGATGTGGAGTtggagaAGGTAGCTGAGAAGGCGGAAGCTCTTGGTGAGTTAAACATGAAGACTCGGAGGACACTGAAGGGCCATGGCAACAAGGTGCTCTGTATGGACTGGTGCAAAGACAAACGACGCATTGTCAGCTCCTCACAGGATGGGAAGGTCATCGTATGGGATGCTTTCACCACCAATAAGGAACATGCAGTGACCATGCCGACTACGTGGGTGATGGCGTGTGCCTACGCCCCCTCTGGCTGTGCCATCGCCTGTGGGGGATTGGATAATAAGTGCTCAGTGTACCCTCTCTCATTGGACAAGGACGAGAACTTGGCGGCCAAGAAGAAGTCGGTTGCCATGCACACCAACTACCTGTCCGGCTGCACCTTCACCAACTCTGACATGCAAatcttGACATCCAGTGGGGACGGTACCAGTGCGCTGTGGGACGTGGAGAGTGGTCAGCTGCTGCAGAGTTTCCACGGTCACTCTGCTGATGTCCTCACTCTGGACCTCGCCCCCTCTGAGACTGGAAACACCTTCGTCTCCGggGGTTCTGATAAGAAGGCTAACGTTTGGGACTTGCGCTCAGGGCAGAACGTCCAGTCGTTTGATACCCACGACTCTGACATCAACTGTGTCAAgtactACCCCAGTGGCGATGCTTTTGCCTCTGCTTCTGACGACTCTACCtgcCGTCTGTTTGATCTCAGGGCTGATCGGGAGGTGTCCATCTACTCCAAAGACAGCATAATGTTTGGAGCCGCCAGTGTCGACTTCTCTCTTAGTGgTCGTCTGTTGTTTGCTGGCTATAATGACTACACCATCAATGTGTGGGACGTCCTGAAGGGGACCAGAGTAGCCATCCTGTTTGGTCATGAGAACAGAGTCAGCTCACTCAGAGTCTCTCCTGATGGAACTGCTTTCTGCTCCGGGTCCTGGGACAACACTCTACGGATCTGGGCCTAGAGCTGCTGATGTCATCAGAGCGAGACTGAACCCCTGGAagtcaggggtcagaggttaaggGTCAGGACCAGAGTCATGTGACCAGTCGACCCAGAGTGCCCATGGAGCACACCCTGCCGCAGAAAGAGTCTGCCTATAGAAACTATATTCAGTTACACACAGTAATAAACTATCTAGGTTTGACTCACAGAGACTATTTGTTTGACTGAAGTTGGACTATACCAAATGCTCATCAGGTCAATGAGGTCCTAAAGCTTTATTATGAGCAGTATTacaattattattactattgtatTACTAAAGTCAGTTGAGCAGTTTTCCTCTACAGCAGGTCCTAGCCAATGCCATGCAGTACTGACTTTCCTGTATAGAAGCTAACTCACTGCCGTTTTTATGCTCCCTAGTCCCCCTTTAAACCTGCTTCACAGTCTGTAGTTTACCAGTCAATTAGTCTGCCCAGGTTGTAACTTGCTCAGATCTAAAGCGCAATACTACTGTTATATAAAACCAGGCCATAGACTGTGGCtagccagagagggagaaagagggagtgttTGAAGTATTGTTCATTTGTAATCATAGTCTTCttgtgaaataaatacattttatttaaattattGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU622803 lncRNA upstream 1730 79674465 ~ 79679581 (+) True G550079
TU622799 lncRNA upstream 9781 79667650 ~ 79671530 (+) True LOC110511859
TU622813 lncRNA upstream 25116 79655812 ~ 79656195 (+) True G550089
TU622873 lncRNA upstream 33157 79647835 ~ 79648154 (+) True G550142
TU622869 lncRNA upstream 50684 79630388 ~ 79630627 (+) True G550138
TU622886 lncRNA downstream 8696 79707918 ~ 79708128 (+) True G550155
TU622805 lncRNA downstream 36409 79735631 ~ 79736467 (+) True G550081
TU622808 lncRNA downstream 45773 79744995 ~ 79748571 (+) True G550084
TU622895 lncRNA downstream 51067 79750289 ~ 79751523 (+) True G550162
TU622897 lncRNA downstream 62881 79762103 ~ 79762676 (+) True G550164
XM_036981032.1 mRNA upstream 9780 79578522 ~ 79671531 (+) False LOC110511859
XM_021607791.2 mRNA downstream 139 79699361 ~ 79705604 (+) True LOC110526648
XM_036979143.1 mRNA downstream 158214 79857436 ~ 79860739 (+) False nrk2
XM_036979144.1 mRNA downstream 158218 79857440 ~ 79860739 (+) False nrk2
NM_001160654.1 mRNA downstream 158237 79857459 ~ 79860732 (+) False nrk2
XM_036979145.1 mRNA downstream 159020 79858242 ~ 79860739 (+) True nrk2
TU622790 other upstream 103321 79571879 ~ 79577990 (+) False LOC118936661
TU622792 other upstream 103321 79571879 ~ 79577990 (+) False LOC118936661
TU622793 other upstream 103321 79571879 ~ 79577990 (+) True LOC118936661
TU622771 other upstream 201233 79479481 ~ 79480078 (+) True G550054
TU622349 other upstream 518280 79151364 ~ 79163031 (+) False LOC110526645
TU623015 other downstream 369526 80068748 ~ 80069285 (+) True G550265
TU623063 other downstream 500948 80200170 ~ 80200529 (+) True G550305
TU623571 other downstream 716225 80415447 ~ 80418272 (+) False myef2
TU623580 other downstream 716225 80415447 ~ 80425775 (+) False myef2
TU623584 other downstream 722320 80421542 ~ 80425775 (+) False myef2

Expression Profile