RNA id: XM_036979145.1



Basic Information


Item Value
RNA id XM_036979145.1
length 852
RNA type mRNA
GC content 0.47
exon number 6
gene id nrk2
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 79857436 ~ 79860739 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CGTAACCAACGGGGGAAAGACCACCCTCACCAACAAACTGATCAAGAACCTTCCCAACTGTTGTGTGGTTCATCAGGATGACTTTTTCAAGTCATCACTGCCCTCGACATGGACGCCATGATGAGTACCATCTACGCCTGGCTTGACGACCCGGTGAAGTTTGAAAGGTCGCACGGCGTCAACAACACCTTGGATACCGAGATTCTCCCGGAGTCTGACCACAGGGATGAGGGAACTCACATCCTCATCGTGGAAGGATTCCTGCTTTACACCTACGGACCTTTGATCGACGTGCTGAACCAACGCTATTTTATTTCCATTCCATACGAAGTATGCAAAAAGAGGAGGTGCTCAAGAAACTACAAGGTACCAGATCCCCCAGGTCTGTTTGATGGTCACGTCTGGCCCATGTACACCAAACACAAGATCATCATGGAAACATCAGGAGTTGATGTTGTGCAGCTAGATGGAACTAAGTCAAAGGAACATCTGTACAACGCTGTCTATGAAGACGTCCTGAACAACATCCAGAAGTGTCTGTAAGCAACAAAGGTCAGTCTATCGGCTAAGAGAAGGCTATATCTGTGCAGGAGGAGAGGCCTTGCCTTAAACATTTCTACGTCTTTCTGGCCTGCAACTAGCAACACACTTTCTACCAGCGGCTGTTGCCACCGTGTCATTACTCTTTTCTAGTGTAAATTATTCCCTGGCGTTATATGCAGGCATGGTTTTATATCCTCCATATTTATTTCTTTGTTACGAGCCACCAGGCAGTCGGTCACAGAGATGACAGTAGAACAGAGGGTTGCAGCTCAAAGCATAACACCAATAAACAATCCTCCTGCTAAAACa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU622931 lncRNA upstream 6877 79851166 ~ 79851365 (+) True G550195
TU622928 lncRNA upstream 18058 79839975 ~ 79840184 (+) True G550192
TU622906 lncRNA upstream 66170 79791837 ~ 79792072 (+) True G550171
TU622902 lncRNA upstream 79705 79778280 ~ 79778537 (+) True G550167
TU622900 lncRNA upstream 84570 79768013 ~ 79773672 (+) True G550166
TU622949 lncRNA downstream 21115 79881854 ~ 79882692 (+) True G550212
TU622963 lncRNA downstream 83981 79944720 ~ 79945040 (+) True G550222
TU622964 lncRNA downstream 87022 79947761 ~ 79948588 (+) True G550223
TU623041 lncRNA downstream 223696 80084435 ~ 80084712 (+) True G550284
TU623043 lncRNA downstream 227099 80087838 ~ 80088156 (+) True G550286
XM_021607791.2 mRNA upstream 152638 79699361 ~ 79705604 (+) True LOC110526648
XM_036981061.1 mRNA upstream 159020 79672029 ~ 79699222 (+) False LOC110526647
XM_036981063.1 mRNA upstream 159020 79681311 ~ 79699222 (+) False LOC110526647
XM_036981064.1 mRNA upstream 159020 79681655 ~ 79699222 (+) True LOC110526647
XM_036981036.1 mRNA upstream 186711 79578524 ~ 79671531 (+) False LOC110511859
XM_036981059.1 mRNA downstream 26775 79887514 ~ 79898351 (+) False LOC110514990
XM_036981060.1 mRNA downstream 27202 79887941 ~ 79898351 (+) False LOC110514990
XM_036981058.1 mRNA downstream 27228 79887967 ~ 79898351 (+) True LOC110514990
XM_036981045.1 mRNA downstream 59224 79919963 ~ 79942131 (+) False LOC110506133
XM_036981046.1 mRNA downstream 59247 79919986 ~ 79942131 (+) True LOC110506133
TU622790 other upstream 280252 79571879 ~ 79577990 (+) False LOC118936661
TU622792 other upstream 280252 79571879 ~ 79577990 (+) False LOC118936661
TU622793 other upstream 280252 79571879 ~ 79577990 (+) True LOC118936661
TU622771 other upstream 378164 79479481 ~ 79480078 (+) True G550054
TU622349 other upstream 695211 79151364 ~ 79163031 (+) False LOC110526645
TU623015 other downstream 208009 80068748 ~ 80069285 (+) True G550265
TU623063 other downstream 339431 80200170 ~ 80200529 (+) True G550305
TU623571 other downstream 554708 80415447 ~ 80418272 (+) False myef2
TU623580 other downstream 554708 80415447 ~ 80425775 (+) False myef2
TU623584 other downstream 560803 80421542 ~ 80425775 (+) False myef2

Expression Profile