RNA id: XM_036981039.1


Basic Information

Item Value
RNA id XM_036981039.1
length 6260
RNA type mRNA
GC content 0.52
exon number 19
gene id LOC110506794
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 80108555 ~ 80147068 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACATTGTTTGAGACTGTGGGCTTTCCGTCCCAGATGACCAGCTCTTCTGCCATTCCATTCCTACGTTGACACATTCAGAGCTAGCTGAGCTAGCTAGGCAGCAACAGTTCAACTAGGCAGAGGTAAAACAGGGTGTGTTTCACACAAATGGCTCAACATTTACAATGAAGACAATTAAATCACCTATATCTTGACGACCACTGCGTGCTCAATGACGGTCTGCCGCGGTCTCAGCGATTGACATGGACTCTTGTGATAAGGATGTGAAACTGTCAGCCGAAGTGGAGCCGTTTATCCCTCAAAAGAAAGGTCTGGAAGGAGCGCTGGTCACCATGAGCTTgtctggaggagaaggaggagggggggtagagcCCACCCCAATCCCCAGCTACCTCATCACCTGTTACCCTTTTGTCCAGGAGAACCAACCCAACAGaCAACAGCACCCCATGTATAGCGGAGGAGGGGACCTGCGCTGGCAgcagcccaaccccagcccaggTGGTCCGTACCTAGCTTACCCCATCCTGTCCTCCCCCCAGCCTCCAGTCTCCAACGACTACACCTACTACCAGATCATGCCTGCACCCTGCCCCCCCATGATGGGCTTTTACCAGCCCTTCCCAGGAACGTACGCCGGGCCCCTGCAGCCTGGCGTGGTAAACACTATATCAGCTGACGTCAGCGAGAGACCGGCCCCTCTCGGACAGGCGTTTGGACTAGCTAAtcagagaggtgggaggggcATGGTCAGACCTGCCGTTCTACCCAAGTCTATGTTCTATCAGCAGCAGCAGGTGGGGTTGTGTCAGTCCCTGAGGGCCAGAAGGCCCCCCATGAGGACTGTAGCTGTCCAGAAGGAGGTGTGTTCCTCGGGGCCAGATGGACGGACCAAGACAGTCCTACTGGTGGACGCTGCCCAACAGACTGACTTCCCAGGGGACAATGCGTGTGGTCGTGGTGCGTCGGAACGGGAGCAGGCCAGCCCCCTGCTGTGGAAGAACCTTCCCCGGAGAAGGCGGGCCTCGCACCCTGCGGAGAGCTCCAGCGAGGCGGACATCGACAGCGACAGCGGATACTGCAGCCCCAAACACAACCAGCAGGCCCCAGGGGTTACGCAACACACTGCCCACGCTGCTATAGCTCCTACGgGAGTGGATGCAGGTGTAATGACAGtaagCTGGGTGAACGTAGCGTCTCAGGCCTCTCAGAGGCCGTGGTCAGACAACAGGACCACCCCGTTCCAACGGACAGGGAAGACCCCTGATCAGAGGAACTACTCGCAGCAGGACTTCCATACAGGGTACTCAGGGGGGCGTGTCTGTTCTAACCCCACCCCCGCAGACAGTAACGGTGGTCTGCAGCAGAGACGGCTCCAGCCCGGACTGGGCCCTGGGACGGTGCTTGCTCCTGAGCCACTCTACTTTGAGGATGAGGATGAGTTTCCAGAGCTGGTCTCAGGAGGTGCACAGAGGAACATCAAAccagaccctaacccttcccAGAACCAACACCAGACCAAACTAACCAAGAACCTGctggagaaccttccagagaaCTCTCCCATCAACATCGTCCAGACCCCCATCCCCATCACCACCTCCGTCCCCAAGAGGGCCAAGAGTCAGAGGAAGAAGGCCCTGGCCGCTGCCCTGGCTACAGCGCAGGAGTACTCTGAGATCAGCATGGAGCAGAGGAAACTACAGGAGGCACTGACCAAAGCAGCAGGGAAGAAGAGTAAGACTCCAGTCCAGTTGGACCTGGGAGACATGCTGGCTGCTCTGGAGAAACAGCAGCAGGCCATGAAGGCTAGACAAATAACCAATACTAAACCACTGTCCTTCACAGtgggtACAGCAGCCCCGTTCCATGGTTCAGGGCCAGGTGCCGGGTCGGGAGCAGGGTCAGGTATAGTATCAATGTTGAAGGCCCAGCAGGCCCACTCTGCCCCCCTCAACATGCTGGACTCCAGCGCTCCACGcctgaagagagggaaggagagagagatccctAAAGTCAAACGACCCACCGCCCTGAAGAAGatCATTCTGAAGGAGcgtgagggaaagagggggaaggggggtgTGGATCAGATTGCTGCCAGCCAGGAAGAACAGGGAGAAGAGGAGCTACACTTCACTGACGACCTCACACGGGAACCTGCCTCTCAGGAGGAGAACGGTCTGAGCGTGCCCAGTGATGACGCGTCCCTGTCCCCGGCCAGTCAGAACTCTCCGTACAGCATCACGCCTGTTTCCCAAGGTTCCCCTGGCTCCTCTGGCATCGGCAGCCCCATGGCCTCTAACGCCATTACCAAGATACACAGCCGCCGCTTCAGAGAgTACTGTAACCAGGTGTTGAATAAGGAGATAGATGAGAGTGTGACAATGCTGCTGCAGGAACTGGTCCGGTTCCAGGAGAGGGTTTATCAGAAGGACCCCAGCAAAGCCAAGACCAAACGCAGACTGGTCATGGGCCTTAGAGAGGTCACCAAACACATGAAGCTCCACAAGATCAAGTGTGTCCTCATCTCACCCAACTGTGAGAAGATCCAGGCCAAAGGGGGTCTAGATGAGGCTCTGTACAACGTCATAGCCATGGCCAGAGAACAGGAGATCCCGTTTGTGTTTGCTCTGGGTAGGAAGGCTCTGGGACGCTGTGTCAACAAACTGGTGCCTGTCAGTGTGGTGGGCGTCTTCAACTTCTCTGGAGCAGAGggtCTGTTTAACCGGTTAGTGTCTCTGACGGAGGATGCTCGTAAGTCCTACAAGGACATGGTGTCAGCGCTGGAGCAGGAGCAGGCTGAGGAGGCGCTGAAGAACGTCAAGAAGGTCACCCACCACATGGGCCACTCCAGAAACCCCTCCGCTGCCTCCGCCATCTCCTTCTGCTCCGTCATCTCTGAACCCATCTCTGAGGTCAACGAGAAGGAGTACGAGACCAACTGGAGGAGTATGGTGGAATCGTCAGATGGGCTGGAGCCTGTGGAGGCTAAACCCAGCCATCCTGCTGCTTCCTCTGGGTTGCAGAGAGACAACCagcccccctccaccaccaccaaccgCAGCCCTTACTCCACTACCCTCCAGCTCAGAGCAGCCGTCCCTGCTCCAGGCTCAGGCccgggggagagagaagagggtcgGGCAGACGACCGGTTGGAGCTGGCCTCCCAGCAGAGCACGGAGACAGGCAGTTTGGATGGGAGCTGTAGGGACCTCCTCAACTCCTccatcacctccaccacctccaccctgGTCCCCGGTATgctggaggaggcagaggaagaggaggaggaggaggaagagtacaCACCAGAGCCCATCTCTGTGGAGGTGCCTGCAGTCATCAGCCGCATTGAGTCCTGGGTGTCTAAGACGCTGGAGAACCTTCAGCTGGGGAAGAGCCAGGACAgcacagaggaggaagaggaggaggaggaggagggagtgcagagtgaggaggaagaggagttggATTCTGCTGATGtcacagagactgggctggagaaGATGGAGGCCAATAATATCACTGGCTGATTAGACCTCattcatccctctttctcttttttgtTTCTCGCTAAATTCGCTCTGTGTACACTCTGTCGCTCCATCTGTGTACACTCTGTCGCTCCATCTGTGTACACTCTGTCGCTCCATCTGTGTACACTCTGTCGCTCCATCTGTGTACACTCTGTCGCTCCATCTGTGTACACTCTGTCGCTCCATCTGTGTACACTCTGTCGCTCCATCTGTGTACACTCTGTCGCTCCATCTGTGTACACTCTGTCGCTCCATCTGTGTACACTCTGTCGCTCCATCTGTGTACACTCTGTCGCTCCATCTGTGTACACTCTGTCGCTCCATCTGTGTACACTCCATCACTTGTcttcctcaccccccccccccccccaacacctgtTCCCCTAACCTGCACTCTTTCACCTCTTTCACCCCCCCTCTTTCTCACAGTTGAACCAgcaactctcctcttctctctgtctgtaacttTGGACTTCAGACATTATCTCAGGAATcagaccatacacacacacacacacacacacacacacacacacacacacacacacacaggcagtccacacacacacagataggcagtcacacacacagaccaaactACAGACAACAgtatctctcctggtctctctgatGGATagactcctctgttcctctcatcctcctctcactgATGTGGACCTGGAACAACTGCCTCAGCTAAACTGGTCTGGTCGGTCTGGCATCGACTGGTCTGGTCTGACATGGAATGGGCTTGTCTGGTCTGACTAAGGGAAGCCCTGGTTCCCTTCCCACCACTCCAGGTTTCCCCAGGATAGGAAGAGGCTGTGAGGAGAGGCTTCCCCTCTGTCTGTATGACGCAGAGCCCTCCAGATGATAGACCTGTCAGTGAGACTGCTGACTACAGACTAACTAGAAGGgaactctccctctgtctgtatgACACAGAGCCCTCCAGATGATAGACCTGAGACTGCTGTCTACAGACTAACTAGAAGAGAAGTCTCCCCTGTCATCCCTGGGTTATTCATAGTGGAGGTCTGGTGGTTCAGTCCAAGCAGAAGGTTGCTGAGCCCCTGCAGGGCTGAGAGTTTATAgctggaagtgtgtgtgtctctgtcccatCATCAAGACTTATGTTACATTGTTGTCATCCTTCccatgtttctctgtctcccaaAACCAATCTAAAACCTTGTTAGGGTTACAAAATTCCCCACTTTTCCAGGAATCCCGGTTGGAAGGTTCACAGAATCTGTTGGGAATAAGCAGAAAAGACGTAATCCTCCAACCTTGGAATTTCGGGAAAGTTGCTGGAGTTTGCAAACCTACACAATGTGTTTCTGACATCGGTTAACCAACACAGTAATCATGTATTATTTTCACTGGGTGTGATTTTAAAGGGGCATATTACCACtttttaacctcatagtcattatCTCCAGGACCAAACCAATGTCTACTAATGTGAAAATGGCGTGTTAAAAAATAATGGCGTGTCCCTTGAAAACATGAATGATATGACATGTCACATGACATAGACTAACAGTAACTGAAGCCAGAACAAATGTCTGATGTACATAACCTGAATAGCTGTTTCTGAGACTCTTTAACCTGTAATGTTGATGATAATATTGACAAGTGTTCATCTGTTTGGGGTTGTTTTCTGAGTggattgtttgttgttgttgctagctgACTTCTGTGTTTTACTATAACCTCTGGTTTCATTTGGTTTAGGTCCCAGTCCATTGACCGGTGGCAGCGTGGGCGTGTTTGTTGGGGTGGGCAGGTAAATGTACTGTAACTAGCTATTATCAGAGACTATTTGGGTTTGAAGCTGACAGGTAGTCCAACTTGACCCAGGACATGTGACTCACTGGTAACAGAGGGGTCAAAGGGAGGAGCCACCACAGGAGTCTCTGAATATTCATGAAGTAATTATCCACCTCACCAGTTATAACCATGTAAATAAAATGTGAACAATTAAAATGTTTGaactacagtgtattaaacacCCCAATCACCTTTTTCTTAAAGCAATTTGATATAAAAAATCTGAATAAGTTGATGTAATTTGATGGTAAATGATAGAAATCAAGTCATGTAATATTAGATGGAGGAGGATGCCATGTGTAGGAGAGGCATGCTGGGTCATATGCAATATGAAggaaggaggggtgagagggagtTGTGTAATAAATAGACAGTCAGGAGTTGGGTCAAGGcattttcaattcaggaagtgaattgAAATTCAACTGACAAAAAATGTAATTGagaaaaaaaacgtgtcaattgAAAACGGACCATGTTTTCTATGAGGATTTTATGAATGAGTTGAATTGAGCCCTTCCCTGATAGAGATGATAACGACGGTGTGTCTAGTACTGAAATGTACGCTGGCTGTGTGCAGGTTTCTCAGTAACTAACTCTCATCAGTGTGTTTTGGAGCCATGACAACCAGTGTGTCCTTTGCACTATGTAAATACCATAATACTTGTAACAACCACCTGGTAACTAATGTCAAAACAAAATGGTTGAATGAAGTAGCTTTTATTTTCTCAGTGTGTCCCTGGtctttctatgtctctctttctgactgtaCAACACTAGCAACATGTAGAGGCTTTTCTCATAACATTACTGTTCTCTTCTCCATCTGGACTGATTAATAATGTCATTAAAATGTTCTTTAAGTAAACTACATACACTCCCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU623045 lncRNA upstream 18120 80090159 ~ 80090435 (+) True G550288
TU623043 lncRNA upstream 20399 80087838 ~ 80088156 (+) True G550286
TU623041 lncRNA upstream 23843 80084435 ~ 80084712 (+) True G550284
TU622964 lncRNA upstream 159967 79947761 ~ 79948588 (+) True G550223
TU622963 lncRNA upstream 163515 79944720 ~ 79945040 (+) True G550222
TU623031 lncRNA downstream 19135 80166203 ~ 80166978 (+) True LOC110526764
TU623058 lncRNA downstream 20638 80167706 ~ 80170624 (+) False G550300
TU623057 lncRNA downstream 22198 80169266 ~ 80170624 (+) True G550300
TU623061 lncRNA downstream 36672 80183740 ~ 80184013 (+) True G550303
TU623064 lncRNA downstream 56297 80203365 ~ 80203599 (+) True G550306
XM_036981055.1 mRNA upstream 2020 80093473 ~ 80106535 (+) False LOC110506137
XM_036981057.1 mRNA upstream 2020 80093473 ~ 80106535 (+) False LOC110506137
XM_036981054.1 mRNA upstream 2020 80093495 ~ 80106535 (+) False LOC110506137
XM_036981056.1 mRNA upstream 2020 80093495 ~ 80106535 (+) True LOC110506137
XM_036981785.1 mRNA upstream 43780 79954799 ~ 80064775 (+) True LOC118965045
XM_036981025.1 mRNA downstream 19115 80166183 ~ 80312702 (+) False LOC110526764
XM_036981024.1 mRNA downstream 19117 80166185 ~ 80317535 (+) False LOC110526764
XM_036981027.1 mRNA downstream 19117 80166185 ~ 80317535 (+) False LOC110526764
XM_036981026.1 mRNA downstream 19118 80166186 ~ 80317535 (+) False LOC110526764
XR_002471038.2 mRNA downstream 177929 80324997 ~ 80326381 (+) False LOC110506798
TU623015 other upstream 39270 80068748 ~ 80069285 (+) True G550265
TU622790 other upstream 530565 79571879 ~ 79577990 (+) False LOC118936661
TU622792 other upstream 530565 79571879 ~ 79577990 (+) False LOC118936661
TU622793 other upstream 530565 79571879 ~ 79577990 (+) True LOC118936661
TU622771 other upstream 628477 79479481 ~ 79480078 (+) True G550054
TU623063 other downstream 53102 80200170 ~ 80200529 (+) True G550305
TU623571 other downstream 268379 80415447 ~ 80418272 (+) False myef2
TU623580 other downstream 268379 80415447 ~ 80425775 (+) False myef2
TU623584 other downstream 274474 80421542 ~ 80425775 (+) False myef2
TU623583 other downstream 282379 80429447 ~ 80430929 (+) False myef2

Expression Profile