RNA id: TU623024


Basic Information

Item Value
RNA id TU623024
length 2364
lncRNA type sense_over
GC content 0.43
exon number 2
gene id LOC110506794
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 80108555 ~ 80147068 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACACTCTGTCGCTCCATCTGTGTACACTCTGTCGCTCCATCTGTGTACACTCTGTCGCTCCATCTGTGTACACTCCATCACTTGTcttcctcaccccccccccccccccaacacctgtTCCCCTAACCTGCACTCTTTCACCTCTTTCACCCCCCCTCTTTCTCACAGTTGAACCAgcaactctcctcttctctctgtctgtaacttTGGACTTCAGACATTATCTCAGGAATcagaccatacacacacacacacacacacacacacacacacacacacacacacacacaggcagtccacacacacacagataggcagtcacacacacagaccaaactACAGACAACAgtatctctcctggtctctctgatGGATagactcctctgttcctctcatcctcctctcactgATGTGGACCTGGAACAACTGCCTCAGCTAAACTGGTCTGGTCGGTCTGGCATCGACTGGTCTGGTCTGACATGGAATGGGCTTGTCTGGTCTGACTAAGGGAAGCCCTGGTTCCCTTCCCACCACTCCAGGTTTCCCCAGGATAGGAAGAGGCTGTGAGGAGAGGCTTCCCCTCTGTCTGTATGACGCAGAGCCCTCCAGATGATAGACCTGTCAGTGAGACTGCTGACTACAGACTAACTAGAAGAGAAGTCTCCCCTGTCATCCCTGGGTTATTCATAGTGGAGGTCTGGTGGTTCAGTCCAAGCAGAAGGTTGCTGAGCCCCTGCAGGGCTGAGAGTTTATAgctggaagtgtgtgtgtctctgtcccatCATCAAGACTTATGTTACATTGTTGTCATCCTTCccatgtttctctgtctcccaaAACCAATCTAAAACCTTGTTAGGGTTACAAAATTCCCCACTTTTCCAGGAATCCCGGTTGGAAGGTTCACAGAATCTGTTGGGAATAAGCAGAAAAGACGTAATCCTCCAACCTTGGAATTTCGGGAAAGTTGCTGGAGTTTGCAAACCTACACAATGTGTTTCTGACATCGGTTAACCAACACAGTAATCATGTATTATTTTCACTGGGTGTGATTTTAAAGGGGCATATTACCACtttttaacctcatagtcattatCTCCAGGACCAAACCAATGTCTACTAATGTGAAAATGGCGTGTTAAAAAATAATGGCGTGTCCCTTGAAAACATGAATGATATGACATGTCACATGACATAGACTAACAGTAACTGAAGCCAGAACAAATGTCTGATGTACATAACCTGAATAGCTGTTTCTGAGACTCTTTAACCTGTAATGTTGATGATAATATTGACAAGTGTTCATCTGTTTGGGGTTGTTTTCTGAGTggattgtttgttgttgttgctagctgACTTCTGTGTTTTACTATAACCTCTGGTTTCATTTGGTTTAGGTCCCAGTCCATTGACCGGTGGCAGCGTGGGCGTGTTTGTTGGGGTGGGCAGGTAAATGTACTGTAACTAGCTATTATCAGAGACTATTTGGGTTTGAAGCTGACAGGTAGTCCAACTTGACCCAGGACATGTGACTCACTGGTAACAGAGGGGTCAAAGGGAGGAGCCACCACAGGAGTCTCTGAATATTCATGAAGTAATTATCCACCTCACCAGTTATAACCATGTAAATAAAATGTGAACAATTAAAATGTTTGaactacagtgtattaaacacCCCAATCACCTTTTTCTTAAAGCAATTTGATATAAAAAATCTGAATAAGTTGATGTAATTTGATGGTAAATGATAGAAATCAAGTCATGTAATATTAGATGGAGGAGGATGCCATGTGTAGGAGAGGCATGCTGGGTCATATGCAATATGAAggaaggaggggtgagagggagtTGTGTAATAAATAGACAGTCAGGAGTTGGGTCAAGGcattttcaattcaggaagtgaattgAAATTCAACTGACAAAAAATGTAATTGagaaaaaaaacgtgtcaattgAAAACGGACCATGTTTTCTATGAGGATTTTATGAATGAGTTGAATTGAGCCCTTCCCTGATAGAGATGATAACGACGGTGTGTCTAGTACTGAAATGTACGCTGGCTGTGTGCAGGTTTCTCAGTAACTAACTCTCATCAGTGTGTTTTGGAGCCATGACAACCAGTGTGTCCTTTGCACTATGTAAATACCATAATACTTGTAACAACCACCTGGTAACTAATGTCAAAACAAAATGGTTGAATGAAGTAGCTTTTATTTTCTCAGTGTGTCCCTGGtctttctatgtctctctttctgactgtaCAACACTAGCAACATGTAGAGGCTTTTCTCATAACATTACTGTTCTCTTCTCCATCTGGACTGATTAATAATGTCATTAAAATGTTCTTTAAGTAAACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU623053 lncRNA upstream 4953 80138130 ~ 80139660 (+) True G550296
TU623030 lncRNA upstream 14695 80129257 ~ 80129918 (+) False LOC110506794
TU623033 lncRNA upstream 15461 80128924 ~ 80129152 (+) True G550276
TU623045 lncRNA upstream 54178 80090159 ~ 80090435 (+) True G550288
TU623043 lncRNA upstream 56457 80087838 ~ 80088156 (+) True G550286
TU623031 lncRNA downstream 19148 80166203 ~ 80166978 (+) True LOC110526764
TU623058 lncRNA downstream 20651 80167706 ~ 80170624 (+) False G550300
TU623057 lncRNA downstream 22211 80169266 ~ 80170624 (+) True G550300
TU623061 lncRNA downstream 36685 80183740 ~ 80184013 (+) True G550303
TU623064 lncRNA downstream 56310 80203365 ~ 80203599 (+) True G550306
XM_036981055.1 mRNA upstream 38078 80093473 ~ 80106535 (+) False LOC110506137
XM_036981057.1 mRNA upstream 38078 80093473 ~ 80106535 (+) False LOC110506137
XM_036981054.1 mRNA upstream 38078 80093495 ~ 80106535 (+) False LOC110506137
XM_036981056.1 mRNA upstream 38078 80093495 ~ 80106535 (+) True LOC110506137
XM_036981785.1 mRNA upstream 79838 79954799 ~ 80064775 (+) True LOC118965045
XM_036981025.1 mRNA downstream 19128 80166183 ~ 80312702 (+) False LOC110526764
XM_036981024.1 mRNA downstream 19130 80166185 ~ 80317535 (+) False LOC110526764
XM_036981027.1 mRNA downstream 19130 80166185 ~ 80317535 (+) False LOC110526764
XM_036981026.1 mRNA downstream 19131 80166186 ~ 80317535 (+) False LOC110526764
XR_002471038.2 mRNA downstream 177942 80324997 ~ 80326381 (+) False LOC110506798
TU623015 other upstream 75328 80068748 ~ 80069285 (+) True G550265
TU622790 other upstream 566623 79571879 ~ 79577990 (+) False LOC118936661
TU622792 other upstream 566623 79571879 ~ 79577990 (+) False LOC118936661
TU622793 other upstream 566623 79571879 ~ 79577990 (+) True LOC118936661
TU622771 other upstream 664535 79479481 ~ 79480078 (+) True G550054
TU623063 other downstream 53115 80200170 ~ 80200529 (+) True G550305
TU623571 other downstream 268392 80415447 ~ 80418272 (+) False myef2
TU623580 other downstream 268392 80415447 ~ 80425775 (+) False myef2
TU623584 other downstream 274487 80421542 ~ 80425775 (+) False myef2
TU623583 other downstream 282392 80429447 ~ 80430929 (+) False myef2

Expression Profile