RNA id: XM_036981106.1


Basic Information

Item Value
RNA id XM_036981106.1
length 2549
RNA type mRNA
GC content 0.54
exon number 9
gene id LOC110506823
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 81551186 ~ 81568248 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACCCAGAAACAACCGTTGCCAGCTGGAGTGCTCCATGCATCTCGGATGAATAACATCTGCTTTACAGTGTGTGTTTAGGATAGATGGATCAGAAGAGAGTCtaaccctctctgttctctctctgcagGCTGCAAACCAACCCTTTACTCCCCCAACAGCTGGCCAAGATGAGCTCATTTGTTATGGTTGGGGTTGTGATAGAAGATAGGGATTCTGTAATGAGAGGGGCCCCATAACTACACAGCAGGCAGAAGTCAACAGAAAGAGATGACAAGGATGATGGTGGCTCAACCTCGCCCCCTGTTGGTGATATTACTGCAGCTGCTCCTCTCCTGCTTGCCCGCCCTCGGATACTCCTCCAACAGATTCTTCTACCAAGACATTCTCAACGGAAACGGCAATGGAGAGATCCACTTTAACGGTGTAAAGCTCCATGTGGACTCCTCCCAGCCCTCTGTGTTCGCTTTGCGGGGGAGTAACGCAACCCTATCCTGCCGATACTGGTACGAGCCAGAATTGAGCTCCCCCAGGAGGGTGCGGGTGAAGTGGTCCTGGCTTCCCATTGTGGGGGGCCATGAGACAGACGTTCTAGTGGCCATCGGGCCCCGCATTCACAGCTTTGGGGATTTCAGGGACCGGGTGCATCTCAGACAGGACTCACCAGGAGATGCTTCGCTGGTCATGACTGAACTCCAGCTCAATGACACGGGTCGTTACCGCTGTGAGGTCATCGACGGGCTGGAGGACAAGAGCGCCACTGTTAACCTCGAGCTACGAGGTGTGGTGTTTCCCTACCAGCCTCCTCACGGGCGCTACAATCTGACCTACCATGATGCTCAGCAAGTCTGCCAGGAGCAGGACTCCACTCTGGCCACCTTCGAGCAGTTGTTCCAGGCCTGGGAGGAGGGGTTGGACTGGTGCAACGCAGGTTGGCTGGCTGACGGGACAGTGCAGTACCCAATCACCAAGTCCCGGAGCCCCTGTGGGGGGCTGGGCCTCGCCCCCGGGGTTAGGAGCTACGGTAGACGCCACCGCCACCTCCACCGCTACGACgccttctgtttctcctcctccctccgagGTAAGGTCTACTACCTCCAGCTCCCCCAGAAGGTCAACCTCACTGAGGCCCAGCAGGCGTGCTTCAACGACGGGGCCCAGATTGCCAAGGTGGGCCAGCTCTACGCTGCCTGGAAGTTCATGGGCCTGGACCGCTGTGATGCCGGATGGCTTGCTGACGGGAGCCTGCGCTACCCCATCAACAACCCCCGCCGCAACTGTGGCCCCATGGAACCAGGGGTGCGCAGCTTTGGGTTTGCCCCACCGCACCACAAGCACGGAGTGTACTGCTACAGTGCAGTTGTGGTGTTTCCCTACCAGCCTCCTCACGGGCGCTACAATCTGACCTACCATGATGCTCAGCAAGTCTGCCAGGAGCAGGACTCCACTCTGGCCACCTTCGAGCAGTTGTTCCAGGCCTGGGAGGAGGGTCTGAACTGGTGCAacgcaggctggctggctgacgggaCAGTGCAGTACCCCATCACCAAGCCCCGAAGGCCCTGTGGGGGACTCGGCCTCTCCCCCGGGGTTAGGAGTTACGGTAGTCGCCACCGCCACCTCCACCGCTACGATGTGTtttgctcctcctcccccctccgaGGTAAGGTCTACTACCTCCAGCTCCCCCAGAAGGTCAACCTCACTGAGGCCCAGCAGGCGTGCTTCAACGACGGGGCCCAGATAGCCAAGGTGGGCCAGCTCTATGTCGCCTGGAGGTTCATGGGCCTGAACCACTGTGATGCCGGATGGCTCGCCGATGGGAGCCTGCGCTACCCCATCACCAAACCCAGCCGCAACTGTGGCCCCCTGGAACCAGGGGTGCGCAGCTTTGGGTTCCCCCCTCCATACCAGAAGCATGGGGTGTACTGCTACAGTGCAGCAGGTTAGAAGCACCATGGTGAACATGCATTGCTCACACAGGATCAAACACTCACTGCATCTAGCCTGTGGTCCACGAGATCAGGAACATTTGTCGTAGTCCACCATTCAAGGACTTGAGATTTccttgctctgtttttttggcGGTATTTGATAGGGACAGATATAATCTAGAGATTGAATGAACAACAGTCAGATGCACCATCATACCTGAGCTAATTTCCAGTGGTTGTCCTCAGATTATCATTGAAGTACACTAGATAGTATTAAAACATCTACACAGTTGTTCTGATGTCATGAGCCAGATCTCTACAGCATGCATATCTATGACTGTTGATAGATGTGTTATATTGTAATATAATGTATGATTACTATACCTACACAACTGTAGTACATTATGGACCCACCTACATTTTGTTGTAGCCTATAATGTGATCCCTCACTATGTGTGAATGAGCCTGTAGTTAAACCCGGACCTTATGCGTATTGTTAGTTCAACTTCCTGTATTGTATGCATTTACTGTTCTCTCTTTGTAAACATTTTCCTGTACGACATAGGAGCTGATCTCAGCTGATATTTTTGTTAAATAAATTGTCTACCCTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU624351 lncRNA upstream 63556 81486998 ~ 81487630 (+) True G551342
TU624348 lncRNA upstream 69844 81481108 ~ 81481342 (+) True G551339
TU624343 lncRNA upstream 76922 81473144 ~ 81474264 (+) True G551334
TU624341 lncRNA upstream 78327 81470881 ~ 81472859 (+) False G551333
TU624398 lncRNA downstream 5180 81573428 ~ 81576841 (+) True G551370
TU624430 lncRNA downstream 42946 81611194 ~ 81611400 (+) True G551394
TU624441 lncRNA downstream 76513 81644761 ~ 81645951 (+) True G551405
TU624443 lncRNA downstream 80780 81649028 ~ 81649315 (+) True G551407
TU624401 lncRNA downstream 87232 81655480 ~ 81656060 (+) True G551373
XM_036981111.1 mRNA upstream 3845 81524807 ~ 81547341 (+) False LOC110506821
XM_036981112.1 mRNA upstream 3845 81524807 ~ 81547341 (+) True LOC110506821
XM_036981109.1 mRNA upstream 84988 81435094 ~ 81466198 (+) False LOC110526107
XM_036981110.1 mRNA upstream 84988 81435094 ~ 81466198 (+) False LOC110526107
XM_036981119.1 mRNA upstream 200879 81302763 ~ 81350307 (+) False LOC110526110
XR_005052254.1 mRNA downstream 91648 81659896 ~ 81661991 (+) False LOC118964937
XM_036981092.1 mRNA downstream 113636 81681884 ~ 81734960 (+) False LOC110526974
XM_036981093.1 mRNA downstream 113637 81681885 ~ 81734960 (+) False LOC110526974
XM_036981094.1 mRNA downstream 113637 81681885 ~ 81734960 (+) False LOC110526974
XM_036981095.1 mRNA downstream 113638 81681886 ~ 81734960 (+) False LOC110526974
TU624220 other upstream 84988 81453496 ~ 81466198 (+) True LOC110526107
TU623987 other upstream 629750 80920707 ~ 80921436 (+) True G551043
TU623583 other upstream 1120257 80429447 ~ 80430929 (+) False myef2
TU623580 other upstream 1125411 80415447 ~ 80425775 (+) False myef2
TU624716 other downstream 276669 81844917 ~ 81849590 (+) False LOC110506150
TU624715 other downstream 281420 81849668 ~ 81856191 (+) False LOC110506150
TU624714 other downstream 288653 81856901 ~ 81860258 (+) True LOC110506150
TU624849 other downstream 453803 82022051 ~ 82060415 (+) False LOC118964938
TU624850 other downstream 453803 82022051 ~ 82046398 (+) True LOC118964938

Expression Profile