RNA id: XM_036981143.1


Basic Information

Item Value
RNA id XM_036981143.1
length 5413
RNA type mRNA
GC content 0.45
exon number 13
gene id LOC110526975
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 82128769 ~ 82198551 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACGCGCTGAGTGAAAGGGGGAGTGTTTACTACATTTTCAATGGAATGCAGCATAGGGGAGCGGGCCTCAGGTGTAGGCAGCGTGCTGAAACGATAACTGGATACGCTCAGATATGAGAGAAGCGTTTTTTTTCGGCGAGTTTCTTTTTTGACAAGCTGATCCCTATTGGTGAACTATAACTAAAGGGTGGTTGTCGCTTGCGgggttattattatttattatttgacAGCGTTCTATTCTATCTGAAAAGGCTTGCGTGTGTAAGATATTCACAAAAGGACTGGGCCCTAAACAACTTGtttcaattgagagagagagggacagggctACCTACCTGTCCTGTTGGTTGCTGGTAGCGGCGTATCAGAAGGATATTATTTTCCGGCTGCAAGTGGAACAGACGTTGACTACAAAGGAGTAACCTAGTCATACATTTTCTTAGCATATCTATTTGTTCGTAATGCTCCACCAACTTGTAAGAGCTCGTTCAAAAAAAGTTGCTTAAATGGGAAAAAACACAATTATCCTTGTATTTTTCACAATATTGATTTTGTGCGCATGTGAAAATAGACAACGGTAGGCTAAATCGAACCTTCATGCCATTTTAAGAGCATATGCCTACTGTTCTTATATTAGCCTACCGTTGCTAAATTGCCTGAATTGTAAACCAAATTTGTCAGATTGCAATCATATTCTTGCCAGTAGTTTAGCCTATGCTTTCTGTACACTAATCTAGCAATCGGGTGTGCGATCACCTGCGCTATTGGCACCATTCCAATGATAAACCATTGCGTTTTCCAATGTTATCCGCAGAAAAGTTATCGCTGAGAATAGGACATAATACAAATGTCATTTAATCCTGCACGGCCAGGCGCAGAGCGCAGTGTGTGTCCTGTGACATTGCACCTGAATGTCTACTTGGCGAGAGAGATGAGTTTTGCCTCGTCTTCCAAAAGAGATTCGTCGCGCCTTTCGCAGGAAGAACATGGGATAGAACTGGATATATTTGGAACTCGTTGGATAGCCAAACGTTCTAAGCCTGAATGAAAGAGATCACAAGTTAATTATCTGGTTATGGTATTTCAACAAATTATGAATTTCAACAAAATTTGAGCTTAAATTCGTGAACGTTCTCTTGGACTCCACTGACTCCGGGATGCCCAACAAACCAATTGACTGAGCTGAAACTGCTTGGATCATGATGCAAGCGTAAAATTGCACCTGACATCGAATGCAACACAGCTGATCACATTTGACAAGGACCTACTATGTCAACATTACCAACCAGGAGGTTGTCTCTCTGCCAGGCTCTGACCTTCATCTGCCTGCTGGTCTCTGCCGTCTACCTGTCCTCCCAGCCCAGCTCTTCCAAGGTGTCTGCGTGGGGTCCTTCAGGGGGTCGTTCAGCGCGTGCCCGACGCCAGCTGCACTACAGGAACGAATGGGCCTCGTGGAATGGCTGGTCCGTGTGCTCGCGCTCATGTGGGGGAGGGGCCTCTGTGCGTACACGCACCTGCATCACCAGGAACCCAGTTGGCGGACCATGTTCAGGAGACCCCAGACAATACAAGATCTGCAACACCAAGGGGTGTGCTGGGGGCTCAGAGGACTTCAGGGAGATGCAGTGTTCTGCCTACAACGACAGACCGCTGGTGGCTGGAAACAGTTACAGATGGACCACCTTCCATGGAGGTCGGTgaggcatgGTTCTAACCCGTGTGAGCTGAGCTGTCTGGCCCAGGGTCACAACTTCTACTACAACTTTGGTCGTGTCCTGGACGGCACTGCCTGCAGTAAAGagcctggagatgtgtgtgtCAACGGAAAATGCTTGACACCGGGCTGTGACCTGATCCTGGGCTCAGACCAGCAGGAGGATGCCTGTATGGTGTGTGGAGGACAGAACTCCACCTGTCTACACCACAGGAGTGTGTACCAGAATGCACAGGGAGCAGCGGGTCCGTTTGGGTACAATGAAGTGACCATGATCCCAGCTGGAGCTACTCACATCCGTGTCACCGATAACAGCAGGAACTATCTGGcGCTCCAGAACGGGCGTTCCCAGTTTGTCATTAATGGGAACTGGAAGATCAGTGTTCCTGGGGAGTACAGCGTAGCGGGAACCAAGCTCCTGTACAAGCGCTCTGTGGACACCTGGGAAAGCTTTGAGGTCCCTGGACCCACTATGGAGGACCTGCACGTCATGGTGTTGGTGACAGACAGGAACCCGGGGATAGAATACGAGTATTGGCTCCCTCCAGACCGCTACGCTCTGTTCCATGGCAGGAGGAGTCAGCTACGCCAGCCTCACCACACTGCTAGCTACATCCCCTGGGATcaccccaccactactactaccactactactactactagacctCCCCCTGTCACCACAAGACCCTACTGGGCTCCTCCAGGTGGCTGGCCCATCAAGTCCCCTCGCCACCCAGCTCGACAACCCCCTCACCAGCCCCATCGCCCACCTGTCCTTCCCCGCCTGGAGAGGGATGAGACCAGGAGGAACCAACTACCCCAACCACCCCGAGGAGggcattgtgggaaatgtaggcGGGCCCGCGGTCGAGGGGAGCGCCAGAGGCAGTACTGCCAGAAAGACTTCGTGTTCCGTGCCAAAGTCATGAGCAAGCTGTACCGGGGCGAGGAGACGCGCTACGATGTCCAGATCATCCACACCTACCACAATCGCTTCCGCCTGGAGCACCGCGAGTTCCTGTGGGTGCCCAACGTGTGTGACTGCCCCCCTCTGGAGGAAGGGCGCCAGTATGTACTGATGGTGCGTCGCCACATTAACAACGAGCAGACGTTGAACCGGATACTGATGGAGGAGGACAGCTACGCAATACcctataaacctagagaggacgCTCTGTTGCGCCCCCTGGAGGATCTGTGTAGTAACAGAGGGCCCCGGCCACCTGCGGAACTGAGAGGCGGCTATGCCTAGACATAGAGATGTACAGTATACACGTGCACACCTAAATGCACACATACTTTGACTGTCATGACTCCTTAACACTCCCCAAGACTGAGCACTTCTGATGGTGAATCAGACAAACAATGGGGCTgcatgtgtgagtctgtgtgtgacaTTAAAATCCCATACACCCCTACGCAACAACTTCCTGCCTCTGGCCCTtcaaaagacacacagagagcaatAGAACCACTAGAATTCCAAAATGGGGGAACTGAAAATGGCGGAGGCAAATACTAGTTGAACCCTGGGAAGAGACTATACTCAGGGTGACCCAGTAGATCTGTCAGTCAGTGTGATAAGAAGGCAAAGCCCTCAAAGAGCAATGCAAAAGCTGACCAGCTCACAAAGTATAGCACTTTAGGTGGACGTTATCACCCACCTTTAAACTTACCAAAGAGAAGAATATATCCACTTCAATGGCCAAGcgttgtgttttgttttgttcccTTTGCTAACTAGATAACTGACTATAACTATCTGTCTGGGTTACTAACAggcagtgttggggaagctactctgaaaatatagtttatagCTTGTatcaattacttcacactggaagaggTTAAGCTACACTtcggcctagattcaatcagatcaagcgttaaccgGCGATAGCAGACACCtgcatagctgatgttttgacGGTGCCGGAGATGTAACtgtgttggagctgtcaaattGGTGAAGAGCTACTCTTCATCATTGTCACTCAAGTTAGATATTCAGAATGacaaagtgtaggctatatagaaataatgactCTCAAATTGAATATCATTagcctaaagaaaataatgaggatttctatcagctGAATCGAGGTGTAGATCACATCTCACATTCCGTGTTTCGAACTTGTAAATAAGGCTCGCATGAGATTTCTCTTAATGCGACTCCGTGCAGCCAATAGCAATGTCCCCTTCAGGTATAATGCCAGGATCTGCTCTAacacagttccacctccgacactgCCTGAACAACTGCTATGCGGATGTcggctaaagcggatctgattgaatacGCTACCCTAAAGAAAAATATAGTTGACTTTAATAGTTACTTTAacaaagtagttcactacatacaAACTACTTTGTAAAAAACTatcatatctaaatctgaaatgtcatcgACTACACAGTTAAGAAAAATTAGTGCAAGAACACatcactctggagtcagatgttaacagtGTAGTGAGATCTGTGTGACAGTCAGAGTGAGTGCTTTGGCTTAGCCCAGTGGCCAGGGAGAGATAAATAAATAGGGGGGAGTTGAATGAATGTAGTGGGCAGTTCCAGTAGATAGCTACATGGCTAAAACAAGTAATTAACTACCAAAGACACTTCAAAGATTTGAATGTAGTTACTACAAAATCTAGGTAAATAACTGAATTAAATGTAGTGGAACTACTCCCCAGGACTGCTAACAGTTCAGTCACTCTATGTCAAAATAAATGTGACACTTTACTTTCTTCTCATACCTAAGATGTATAAAACTACATATTGTTCCATATTGTATTTATGTGGCAAAATAATATCTAGATCAtaacatttatatttgtgttttgCTTCTAAAatatagtatttttttaaatctatcaATGTATTTCTATCTATTGATGTATGTGTTTTGGGTAACAATTTACATTACTTTGCTCTTATACCTGTGAAGTAACCGTGTCATTAATTACACTAGTAGCATTGTAGTTACATGTTATAGCACAGTACTTCATGAATTGCATTGTAATTGCGTAGTGATGGGGTTGAGTTTATTTCACTTGTGTAGTAACAGAAACCGCTCAactctactactattactatgcaTTTAAATCTACACTGACATAAGAGCAAGTTCATGTAAGGTGTTACTGTGTTTTGAATATTAAATCAATCAGGTTCCCTTAGTCTGTTTTGTTAGGTCTTCTATTGTCTAATTCACATGAATATTTACTTTTGTGAGAAACAAAAATATGGATTATTCAGTATTTTATATTGGTGTGGCACTGAGTAGCTACAAATATAAGAAACATATTTCATTTGAATGACTGGTGAATTATGTGCAATCTATTCCTATACATTAACTATGCTGtaacaagttattttttattataaTGTTTTAAAATGTGCCAACACATTGCTTTCTTTAACACCACTGACACCACATTTTACACGGCCTTTTACAAGGTCTGTACTCATATGCATTTTTGTGTAGTTTGTATAGGTAGATTACCCTAGAAACATCATTCAAACTTTAAGACCTGCTGAGTGCTTGCATACAACTTTTTGATAGTTTAaagtcttttttttaaatgaaactaTTTTATTTCCCATCTTCATTCAATTCCATGGGATTTCTAAAGATCCCATTGTGACAATATCAACTTCCAGACTTCTAACATTCCATTCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU624876 lncRNA upstream 13030 82115392 ~ 82115740 (+) True G551752
TU624843 lncRNA upstream 14414 82112035 ~ 82114356 (+) True G551721
TU624802 lncRNA upstream 220038 81908493 ~ 81908732 (+) True G551684
TU624801 lncRNA upstream 222541 81905634 ~ 81906229 (+) True G551683
TU624794 lncRNA upstream 248628 81878909 ~ 81880142 (+) True G551678
TU624930 lncRNA downstream 65245 82263795 ~ 82264106 (+) True G551804
TU624975 lncRNA downstream 186367 82384917 ~ 82385727 (+) True G551848
TU624978 lncRNA downstream 190898 82389448 ~ 82391425 (+) True G551851
TU624994 lncRNA downstream 222415 82420965 ~ 82421244 (+) True G551863
TU624995 lncRNA downstream 222807 82421357 ~ 82421616 (+) True G551864
XM_036981136.1 mRNA upstream 21318 82022011 ~ 82107452 (+) False LOC118964938
XM_036981137.1 mRNA upstream 21318 82022012 ~ 82107452 (+) False LOC118964938
XM_036981139.1 mRNA upstream 21318 82022012 ~ 82107452 (+) False LOC118964938
XM_036981140.1 mRNA upstream 21318 82022012 ~ 82107452 (+) False LOC118964938
XM_036981135.1 mRNA upstream 109247 81944654 ~ 82019523 (+) True LOC110506160
XM_021607808.2 mRNA downstream 53302 82251852 ~ 82253308 (+) True LOC110526669
XM_036981788.1 mRNA downstream 77507 82276057 ~ 82276380 (+) True LOC118965047
XM_036981151.1 mRNA downstream 108994 82307544 ~ 82318126 (+) False vps33b
XM_036981153.1 mRNA downstream 108994 82307544 ~ 82318126 (+) False vps33b
XM_036981154.1 mRNA downstream 108994 82307544 ~ 82318126 (+) False vps33b
TU624849 other upstream 68355 82022051 ~ 82060415 (+) False LOC118964938
TU624850 other upstream 82372 82022051 ~ 82046398 (+) True LOC118964938
TU624714 other upstream 268512 81856901 ~ 81860258 (+) True LOC110506150
TU624715 other upstream 272579 81849668 ~ 81856191 (+) False LOC110506150
TU624716 other upstream 279180 81844917 ~ 81849590 (+) False LOC110506150
TU624931 other downstream 66419 82264969 ~ 82265749 (+) True G551805
TU625026 other downstream 278368 82476918 ~ 82483802 (+) False G551889
TU625028 other downstream 281023 82479573 ~ 82483802 (+) False G551889
TU625030 other downstream 281023 82479573 ~ 82483802 (+) True G551889
TU625066 other downstream 390987 82589537 ~ 82601043 (+) False LOC110526694

Expression Profile