RNA id: TU624844


Basic Information

Item Value
RNA id TU624844
length 1972
RNA type TUCP
GC content 0.44
exon number 2
gene id LOC110526975
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 82128769 ~ 82198551 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggaaatgtaggcGGGCCCGCGGTCGAGGGGAGCGCCAGAGGCAGTACTGCCAGAAAGACTTCGTGTTCCGTGCCAAAGTCATGAGCAAGCTGTACCGGGGCGAGGAGACGCGCTACGATGTCCAGATCATCCACACCTACCACAATCGCTTCCGCCTGGAGCACCGCGAGTTCCTGTGGGTGCCCAACGTGTGTGACTGCCCCCCTCTGGAGGAAGGGCGCCAGTATGTACTGATGGTGCGTCGCCACATTAACAACGAGCAGACGTTGAACCGGATACTGATGGAGGAGGACAGCTACGCAATACcctataaacctagagaggacgCTCTGTTGCGCCCCCTGGAGGATCTGTGTAGTAACAGAGGGCCCCGGCCACCTGCGGAACTGAGAGGCGGCTATGCCTAGACATAGAGATGTACAGTATACACGTGCACACCTAAATGCACACATACTTTGACTGTCATGACTCCTTAACACTCCCCAAGACTGAGCACTTCTGATGGTGAATCAGACAAACAATGGGGCTgcatgtgtgagtctgtgtgtgacaTTAAAATCCCATACACCCCTACGCAACAACTTCCTGCCTCTGGCCCTtcaaaagacacacagagagcaatAGAACCACTAGAATTCCAAAATGGGGGAACTGAAAATGGCGGAGGCAAATACTAGTTGAACCCTGGGAAGAGACTATACTCAGGGTGACCCAGTAGATCTGTCAGTCAGTGTGATAAGAAGGCAAAGCCCTCAAAGAGCAATGCAAAAGCTGACCAGCTCACAAAGTATAGCACTTTAGGTGGACGTTATCACCCACCTTTAAACTTACCAAAGAGAAGAATATATCCACTTCAATGGCCAAGcgttgtgttttgttttgttcccTTTGCTAACTAGATAACTGACTATAACTATCTGTCTGGGTTACTAACAggcagtgttggggaagctactctgaaaatatagtttatagCTTGTatcaattacttcacactggaagaggTTAAGCTACACTtcggcctagattcaatcagatcaagcgttaaccgGCGATAGCAGACACCtgcatagctgatgttttgacGGTGCCGGAGATGTAACtgtgttggagctgtcaaattGGTGAAGAGCTACTCTTCATCATTGTCACTCAAGTTAGATATTCAGAATGacaaagtgtaggctatatagaaataatgactCTCAAATTGAATATCATTagcctaaagaaaataatgaggatttctatcagctGAATCGAGGTGTAGATCACATCTCACATTCCGTGTTTCGAACTTGTAAATAAGGCTCGCATGAGATTTCTCTTAATGCGACTCCGTGCAGCCAATAGCAATGTCCCCTTCAGGTATAATGCCAGGATCTGCTCTAacacagttccacctccgacactgCCTGAACAACTGCTATGCGGATGTcggctaaagcggatctgattgaatacGCTACCCTAAAGAAAAATATAGTTGACTTTAATAGTTACTTTAacaaagtagttcactacatacaAACTACTTTGTAAAAAACTatcatatctaaatctgaaatgtcatcgACTACACAGTTAAGAAAAATTAGTGCAAGAACACatcactctggagtcagatgttaacagtGTAGTGAGATCTGTGTGACAGTCAGAGTGAGTGCTTTGGCTTAGCCCAGTGGCCAGGGAGAGATAAATAAATAGGGGGGAGTTGAATGAATGTAGTGGGCAGTTCCAGTAGATAGCTACATGGCTAAAACAAGTAATTAACTACCAAAGACACTTCAAAGATTTGAATGTAGTTACTACAAAATCTAGGTAAATAACTGAATTAAATGTAGTGGAACTACTCCCCAGGACTGCTAACAGTTCAGTCACTCTATGTCAAAATAAATGTGACACTTTACTTTCTTCTCATACCTAAGATGTATAAAACTACATATTGTTCCATATTGTATTTATGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU624895 lncRNA upstream 39995 82154628 ~ 82155340 (+) False G551770
TU624896 lncRNA upstream 40347 82154628 ~ 82154988 (+) True G551770
TU624876 lncRNA upstream 79595 82115392 ~ 82115740 (+) True G551752
TU624843 lncRNA upstream 80979 82112035 ~ 82114356 (+) True G551721
TU624802 lncRNA upstream 286603 81908493 ~ 81908732 (+) True G551684
TU624930 lncRNA downstream 66127 82263795 ~ 82264106 (+) True G551804
TU624975 lncRNA downstream 187249 82384917 ~ 82385727 (+) True G551848
TU624978 lncRNA downstream 191780 82389448 ~ 82391425 (+) True G551851
TU624994 lncRNA downstream 223297 82420965 ~ 82421244 (+) True G551863
TU624995 lncRNA downstream 223689 82421357 ~ 82421616 (+) True G551864
trnaa-ugc-18 mRNA upstream 45540 82149719 ~ 82149795 (+) True trnaa-ugc-18
XM_036981136.1 mRNA upstream 87883 82022011 ~ 82107452 (+) False LOC118964938
XM_036981137.1 mRNA upstream 87883 82022012 ~ 82107452 (+) False LOC118964938
XM_036981139.1 mRNA upstream 87883 82022012 ~ 82107452 (+) False LOC118964938
XM_036981140.1 mRNA upstream 87883 82022012 ~ 82107452 (+) False LOC118964938
XM_021607808.2 mRNA downstream 54184 82251852 ~ 82253308 (+) True LOC110526669
XM_036981788.1 mRNA downstream 78389 82276057 ~ 82276380 (+) True LOC118965047
XM_036981151.1 mRNA downstream 109876 82307544 ~ 82318126 (+) False vps33b
XM_036981153.1 mRNA downstream 109876 82307544 ~ 82318126 (+) False vps33b
XM_036981154.1 mRNA downstream 109876 82307544 ~ 82318126 (+) False vps33b
TU624845 other upstream 1776 82129834 ~ 82193559 (+) False LOC110526975
TU624849 other upstream 134920 82022051 ~ 82060415 (+) False LOC118964938
TU624850 other upstream 148937 82022051 ~ 82046398 (+) True LOC118964938
TU624714 other upstream 335077 81856901 ~ 81860258 (+) True LOC110506150
TU624715 other upstream 339144 81849668 ~ 81856191 (+) False LOC110506150
TU624931 other downstream 67301 82264969 ~ 82265749 (+) True G551805
TU625026 other downstream 279250 82476918 ~ 82483802 (+) False G551889
TU625028 other downstream 281905 82479573 ~ 82483802 (+) False G551889
TU625030 other downstream 281905 82479573 ~ 82483802 (+) True G551889
TU625066 other downstream 391869 82589537 ~ 82601043 (+) False LOC110526694

Expression Profile