RNA id: XM_036981162.1


Basic Information

Item Value
RNA id XM_036981162.1
length 1720
RNA type mRNA
GC content 0.51
exon number 12
gene id si:ch73-314g15.3
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 82331797 ~ 82343201 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAATTTGATTTTGTAGTTCAGAAGAAAACAATTCTGCCACACATCGGCATGGACGGCAGCAGTAGCAAGCTAGTTATGCACAACATTACTCTTACTACTATTTTCTGCATCGTATGTTTTAAATGGATCCCTTCGAGGAAAATTTAGTCGCTGCATTAAGAGAAATTGTCAAAGACGGAAACTGGCATTGTGTAGGAAAGAAGTGTGATTTTGACTCACCATGCACAAAGCTGTACTCTGAGGATGGTGAACACATTGTCCTGGTTCACACAGAAGATGACAGATTCTGGGCTATGGATTCATCCTGTCCCCATGAAGGAGGCCCTCTTGACCTCGGTGACATTGAGGACCTGGGAGATGGGAAGAGGGTTCTGGTCTGTCCCTGGCATCACTTTGACTTCTGCCTGGAGACAGGTGCCTCTTCCATGGGactacagAACCAGGTGTATGAGGTCAGAGTTGTCCAAGACATGATTTATATCAACACACAGAATGAGCTGTGTCTAAGTCCCATCCCAGAGACAGACACATCTAATGGCAAGTTGTCAGTAGATGCTGTCGAGCCATCACCCTCTGAGGACACACTGTGCTTCTGGGCTACAAAGATCCTCTGCACACCAGACCCCAAAGAGAAGGTAGCCATGACACTGGAGGTCCAGGAGAGGTGGAACAGTGGGGAGATAACAGAGGTGGGTCAGGCTACACCACCTGTCCAGCCAAGCAGGAAGGAGAACCTGACCGTACTGCAGCCGGGCAAAATCAAGCGTGGCAAAGGTGGCACACAGGCTAGCAGGATAGCCCTCCTCCACTCCCTGGCTAACATAGAGCAGTGGGCTATAGACCTGTCCTGGGACGTCATCGCTCGCTTCTCATCGGTCAGACTGGACACTGGAGAGCCCCTGCCCCGCCAGTTCTTCAGCGACTTTGTCAAAGTGGCCGGAGACGAGGCCAAGCATTATCACTTACTAGAGACGAGGATCACAGAACTCGACAGCTTCTTTGGTGCGTTACCTGTTCATAATGGACTGTGGCAGTCAGCAACGGATACGTCCCACAACCTTCTGGCGAGGCTAGCCATTGTGCATATGGTACATGAAGCCAGGGGCCTAGATGTGCACCCCCAGACCCTCTCCCGCTTCGCTGCCCAGGGGGACTGCAGCTCTGTGGAGGTGCTGGAGGTTATCTACCGGGATGAGATCACTCACGTGGCCGCCGGGCTCCGCTGGTTCACCTACATCTGTTCACAGGAAGAACGGGATTGCTTATCTACTTTCCATGACTTGGTGAAGCAGCACTTCAAAGGTTACCTGAAGCCTCCTTTTAACACAGAGGGTAGGAAGACAGCAGGGATGACAGAGGAGTGGTACGTGCCTCTTGTAAAGCCTCCCAGTTAACAGACAATGCCCCCGAGACCAGCATGCTGTGACGAACACAGTTGTAAAGCCTCACAGTTAACAGACAACGTCCCCGAGACCAGCATGCTGTGACGAACACAGCTGCTGCGTCCCAGCGGGTGGAGGAAGCAGATTCACACCAAATCTCATAAAACCTGGATGAAGGCCAAACTGTTACTATTATAAAGGTTTAAACTCAAACATGTCAGTAGCCGTATCAATGTGGCATTGCAATCTAATATCTGAGCCCTGATGACGTGGCATTCGATCATTGGTTAATTTGTGCAGCGCGACTGCAATGTAGTCGGCCTGGAACGGCACCATTT

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU624930 lncRNA upstream 68813 82263795 ~ 82264106 (+) True G551804
TU624895 lncRNA upstream 177579 82154628 ~ 82155340 (+) False G551770
TU624896 lncRNA upstream 177931 82154628 ~ 82154988 (+) True G551770
TU624876 lncRNA upstream 217179 82115392 ~ 82115740 (+) True G551752
TU624843 lncRNA upstream 218563 82112035 ~ 82114356 (+) True G551721
TU624975 lncRNA downstream 41716 82384917 ~ 82385727 (+) True G551848
TU624978 lncRNA downstream 46247 82389448 ~ 82391425 (+) True G551851
TU624994 lncRNA downstream 77764 82420965 ~ 82421244 (+) True G551863
TU624995 lncRNA downstream 78156 82421357 ~ 82421616 (+) True G551864
TU624996 lncRNA downstream 78424 82421625 ~ 82422120 (+) True G551865
XM_036981157.1 mRNA upstream 2546 82318327 ~ 82330373 (+) True LOC110526676
XM_036981161.1 mRNA upstream 2563 82318326 ~ 82330356 (+) False LOC110526676
XM_036981156.1 mRNA upstream 2564 82318326 ~ 82330355 (+) False LOC110526676
XM_036981167.1 mRNA downstream 5608 82348809 ~ 82356001 (+) False LOC110526684
XM_036981168.1 mRNA downstream 5608 82348809 ~ 82356001 (+) False LOC110526684
XM_036981170.1 mRNA downstream 5611 82348812 ~ 82356001 (+) False LOC110526684
XM_036981169.1 mRNA downstream 5613 82348814 ~ 82356001 (+) True LOC110526684
XM_021607836.2 mRNA downstream 19429 82362630 ~ 82365393 (+) True LOC110526680
TU624931 other upstream 67170 82264969 ~ 82265749 (+) True G551805
TU624844 other upstream 135251 82195335 ~ 82197668 (+) True LOC110526975
TU624845 other upstream 139360 82129834 ~ 82193559 (+) False LOC110526975
TU624849 other upstream 272504 82022051 ~ 82060415 (+) False LOC118964938
TU625026 other downstream 133717 82476918 ~ 82483802 (+) False G551889
TU625028 other downstream 136372 82479573 ~ 82483802 (+) False G551889
TU625030 other downstream 136372 82479573 ~ 82483802 (+) True G551889
TU625066 other downstream 246336 82589537 ~ 82601043 (+) False LOC110526694
TU625104 other downstream 247367 82590568 ~ 82593162 (+) True G551950

Expression Profile