RNA id: XM_036981169.1


Basic Information

Item Value
RNA id XM_036981169.1
length 2178
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC110526684
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 82348809 ~ 82356001 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGCCATAATCAAGAGACTCAATGAACCAATCTCCTCCCACATGCACTTTGGAAAACCTCTCCTCTGCGTTGTGTATGTTCAACAGGTAGAATCATGTTCCCTACTGCACTACCTCCCTTCTCCGAGTCAGGCTGTGAGAGAAACAGCCCCTGTCATTGCAGATTTCATCCACTTCAGACATGTTTCGTGTGTGGATCAAACTTTGTCTCCTCTTGCCAGGGGTAAGTAGCTTCATGATCCACAACACCCTCCACAGCCTGTGCTTGGAGGACTTCCCCAAGACGGGCCTGGTTCAGCTGAATAAATGCAACCTGGACTCAGTTCTCCAGCAGTGGATCTGGAGGGACCAGAGTCTCCTGGAGAGTGTGGGGACCTCCAGGTGCCTGTCGGCCCACCACTCTGACCCTGTCCAGACTGTACCCTGTGAGGGGGTAGAGGATGGGGGACACAGGGGTGATGGGGGGCTGCGGTGGGGGTGTGAGTTGAACAGGCTGATCAGTCAGAACAGTTCTCTGGAGCTCTCCACAGACGGGAAACGACTGACGCTGTCCCACAGGAGCAAGCAGACCAAGTGGAGGTCTCTGGATGAAGGGGATATATGCCAGGAGAGGCTCAGATCCAAAAGGGCATCGAGCGATCCCGATGAGTTTGAGGTGAAACCTGCGGAAGAGCAGAAAGCGGGGCCTCCTGGTATGACCGATGAACAGAAAGAATTCCTCAGATGGTTCTATCGCACCGAGGACCCAACTCCCTGGAAGTTTGCGATGCTGGCTCTGTCCTTCGCTGCCCTTCTGCTGGGCTGTCTGCTTCTGGGAATGGGCTCCATGGCGAACAAAAACCGGAATAAGATAGCCAAGTACAAGGCGGCGGCTCTGGCCATGAAGCCGGAGGCAGAAGAACTACAGGTCATCGTCACGGAAGTTGGAGGTCAAAGAACTAACTCCGTCAACAGTGCCTATGTCCAGGTCAGTATGAGCCCATCTGAGATCCCAGTGAGCCAGGCCAAGCCCCTCCAGGACAACGGGGAGGTAGAGGGGCTCAAACCGGGGGACATTGTGGTGACCTGGAATGACGGGAACGTGTCCAGCCTGTACCCCGAGCCTGAGGGGGAAGTGGAGGTGTTGgcggaggtagagaaagaggaggtgttgaagaaagaggaggtggttgaggtagagaaagaggaggCAGAAGAGGGAGTGGTGGTAgagggatgaaggagagagatataACAGCCACGTTCCTCATTACTGCTCCTCTGCAGAGGCAGAACAGAAACTCCTATTTACTTAGGAATAACTGTCCTTTTAAGTTGTTTTATTTTGACCTGTAACTTAAACAACCACTGTCTGTTTAATTACTGTAATGCCCATTTTACACTACTGTGCTGAGCCAGACCGTACTGTGCTGAGCCAGATATTTTATTGGTGGATGCGTAACCATGCCAGCGCAGTACAGCTTGActtggctcagtagtgtgaaaagggtatacaactactacaaATAATGCTGTGTACAAGATGTGCAGTATCACAGTCATCATTCACAAGTACTTTGTTGTTTGCAGTTTCAGCAATGGAATATACATCTACTGTAAACATTGCTGGCCGTCGAAACATCGCAACCAACTATTTGGGATACCAAATAGTTAgtaaatgttgttttttggtCATGAAGAAGTGCAACGTGTTGTTTATAGTGCAGTGAAAAGTTTTCCTATGTCTCTTGACAGTATGTAGGAACACTTATAAACCATGTGTCATAAGCTGTTCATGTGTAATCTACTTGGGAAACACTAAAAGGCAACTAAACATGGTCTGAGATAACATTAAGATTGGAAGATCAAACTTATCTTTATACATCTCTTTTGTAATTCTATTTGTAAAGTATTTTTAGTTATAATGCTGGCCACCAGGAAGATTAGCCGACGTCATGACATcagctaacggggatcctaataTAATACAACTGGAATGATCTTGCTGTGAGTATAGTGGAACGCTCTTGTGAGAGAGTATTCACATATAGAtgttttggatagaaaacagaaTTCAGTGGGTTAACTTTTGTCATCACACCACCTCTCCATATGTAAGATAGATTTTCATTGTGTTATAAAAGCATTCCAACAATTGCAGTATTTACAATAAGGAAATAAAACTGTTCATATCAAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU624930 lncRNA upstream 84708 82263795 ~ 82264106 (+) True G551804
TU624895 lncRNA upstream 193474 82154628 ~ 82155340 (+) False G551770
TU624896 lncRNA upstream 193826 82154628 ~ 82154988 (+) True G551770
TU624876 lncRNA upstream 233074 82115392 ~ 82115740 (+) True G551752
TU624843 lncRNA upstream 234458 82112035 ~ 82114356 (+) True G551721
TU624975 lncRNA downstream 28916 82384917 ~ 82385727 (+) True G551848
TU624978 lncRNA downstream 33447 82389448 ~ 82391425 (+) True G551851
TU624994 lncRNA downstream 64964 82420965 ~ 82421244 (+) True G551863
TU624995 lncRNA downstream 65356 82421357 ~ 82421616 (+) True G551864
TU624996 lncRNA downstream 65624 82421625 ~ 82422120 (+) True G551865
XM_036981164.1 mRNA upstream 5613 82331797 ~ 82343201 (+) False si:ch73-314g15.3
XM_036981163.1 mRNA upstream 5613 82332917 ~ 82343201 (+) False si:ch73-314g15.3
XM_036981162.1 mRNA upstream 5613 82332919 ~ 82343201 (+) True si:ch73-314g15.3
XM_036981157.1 mRNA upstream 18441 82318327 ~ 82330373 (+) True LOC110526676
XM_036981160.1 mRNA upstream 18460 82318327 ~ 82330354 (+) False LOC110526676
XM_021607836.2 mRNA downstream 6629 82362630 ~ 82365393 (+) True LOC110526680
XM_036981175.1 mRNA downstream 57516 82413517 ~ 82420631 (+) False LOC110526689
XM_036981176.1 mRNA downstream 57516 82413517 ~ 82420631 (+) True LOC110526689
XR_005052261.1 mRNA downstream 116005 82472006 ~ 82476306 (+) True LOC118964942
XM_036981789.1 mRNA downstream 163253 82519254 ~ 82529744 (+) True LOC118965048
TU624931 other upstream 83065 82264969 ~ 82265749 (+) True G551805
TU624844 other upstream 151146 82195335 ~ 82197668 (+) True LOC110526975
TU624845 other upstream 155255 82129834 ~ 82193559 (+) False LOC110526975
TU624849 other upstream 288399 82022051 ~ 82060415 (+) False LOC118964938
TU625026 other downstream 120917 82476918 ~ 82483802 (+) False G551889
TU625028 other downstream 123572 82479573 ~ 82483802 (+) False G551889
TU625030 other downstream 123572 82479573 ~ 82483802 (+) True G551889
TU625066 other downstream 233536 82589537 ~ 82601043 (+) False LOC110526694
TU625104 other downstream 234567 82590568 ~ 82593162 (+) True G551950

Expression Profile