RNA id: XM_036981215.1



Basic Information


Item Value
RNA id XM_036981215.1
length 6172
RNA type mRNA
GC content 0.49
exon number 29
gene id LOC118964944
representative False

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 83756223 ~ 83912000 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCAGGCTCGCGCGGAGCGGAGAGGAGATGCGTGTATAAATATCAGAGTGCCTCTTCTCTCCGCTATAGCAGACCTGACACATGACCTAATTGTCCCTGTCACATCTCCAGTGTGTCCTCACCAAGACCGCACTTCCCGAAGGAGTCGACTAGAAAACGGTGCCTTTGGCCTCATCCCCCTGTGAGCCCCTGCTAACCCACATTAAGCCCTACGAAGTGCACACTCTGAAGTGCACACTCTGGAGAAAACTTCTCTTCTGCCAGTAATCCATACTTCTCATTGAGAGATGAAGATGTGCGTCCCACTGCTGATGGCTGTGCTGCCTATCATACAGGCAGTGTGTCCAGACAGGGAGCCCGGCCTGCAGCCATGGACCCCCGGCCACAGTGAAGCCCACCATGTTACCATTGGCTATGGCAGAAAGGTCATCCTCACCTCTTCAGCTACTGTCCACTCCATAGAGATCCTCAACGGAgGAAAGTTAGTAATAGCAGACTCGTATCGTCCCATCCTACTGCGTACCAAACACATTCTGATCGGCAACAGAGGACAGCTGCACATAGGAAGTCCTGACTGCCCGTATAAGGGCAACCTTACCATCTCCTTATTTGGAAGGTCTGAcgacacagacacagagcacaGTTACTTTGGCCGTAAGTACATTGGTGTGGGGACAGGAGGGACACTGGAGATCCATGGGGAGAAGAAGCTGTCGTGGACCTTCCTCAACAAGACCCTGCACCCAGGGGAGAGCGAGGACAACAGCTACCTGTTCGAGAGGGGCTGGGGCAACCGGGGGATCATAGTTCACGTCATCGACCCCAAGACTGGAGAAGTGCTCCACAATGATAGGTTTGACACATACCGCAGTAAAGAAGAGAGTCGTCGCCTGGCCCAGTATGTAGATGTGGTAGACAATGGGATGATTCTGGCCATGATGGTCAACGATGAGGGGTCTAACAACCTAGAGGACTCGGCCAGGAAGATCCTCACCAAGCTGGGGAGTAAAGACTTCCACCGCCTGGGCTTCCGtCATCCCTGGAGTTTCATTGCGTTGAAAGGCAACTCGTCCTCTGCAGTGGAGGATCATGCTATCTATCAAGggACCAAAGCCTCCTCGGAGGCTCGTAGTTCACGCATGTTCCAGTCAGAATACGGAGAGCACTTCACCATCACCACTTCCAGCCAATGGGTGCAAGaggCAGAGTGGACTGAGTGGTTTGacagagatgatgagagaggatCAGGAGACTGGGAGAAGCTGTCTGACCTCCACAAGGCTTACCCTGACCGCCTCTGTAGCACTCCCATGGATAtacaggctGAGTCCCATGATGGTGTGCCATCTAACGAGACAGGAGATGTCATCTATAAGTCTGACAGGGACTACGGCTTCGTCTGTCTCAACAAGGACCAGAGCCACGGCCTCTGCCACAACTACCGAGTACGCTTCCTCTGCGGTAAACTAGTGCGTCCCCAGGCCTCCATCTCTATAGTGCATCTGTCCAACAGCACTGTCCTGGAGTTAGCTGAGCCAGCTGAAGGGTGGGGCCCAGGAGACAGACTGGTGCTGGCCAGTACTGACTACTCTATGCACCAGGCTGAGGAGTTCACCATactaccctgccctgcctgtGGGCCCACACAGGTTAAAGTccaaggtaagccAGTGTTCCTCCACATGGGTGAGGAGGTGGATGGGGTGGACATGAGGGCAGAGGTCGGCCTGCTGAGTCGCAACATCCTGGTGCGCGGCGAGATGGAACCTGGTTGCTACGGCAACGAGGCCTGCAAGTTCTTCGCCTTTGACACTTTTGGAGGACACGTGAAGGTGGAGCGTGGCTTTAAGTCTGTGCATGTGTCCGGTGTAGAGCTGCAGCACATGGGTCAACAGTCTATGGGTCACTACCCTGTCCACTTCCATATGAACGGAGACGTGGACCAGAAGGGAGGCTACGATCCCCCCACCTCCGTCAGCGATCTGTCCATCCACCACACCTTCTCCCGCTGTGTCACTGTGCACGGCTCTAACGGCCTACTGGTAAAGGACGTGGTGGGCTATGATGCTCTGGGACATTGTTTCTTCACTGAggacggtcctgaggagaggaacaCTTTTGACCACTGCCTGGGGCTGATGATCAGAGCTGGTACCCTGCTGCCCTCCGACAGGGACAGCAAGATGTGTCGCGATATCACACAGGGAGCCTTCCCCGGATATGTGGCCAACCCACGACAAGACTGCAGTGCTACGTCCACCTTTTGGATTGCCAACCCCAATAACAACCTCATCAACTGTGCAGCAGCAGGCTCAGAGGAGACAGGTTTCTGGTTCCTCTTCCACCATGTGCCTACGGGAGCCTCTGAGGGCATGTACTCTCCTGGCCGCTCCGAACACACACCTATGGGCCAGTTCACCAACAATAGGGCCCACTCCAACTACAGGGCTGGGATGATCCTAGACAACGGTGTGAAGACGACACAGGCCAACGACAAGGACAAGAGACCCTTCCTTTCTCTAGTGGGAGCAAGatatggACCCCACCAGGATGCGGATCCCTTCAAGCCCCGTGTCCCAGCTCTCATCCACCATTTTGTGGCCTACAAGAACCAGGACCACGGAGCCTGGCTGAGGGGAGGAGATGTCTGGCTGGATGACTGCCAattTGCTGATAATGGAATTGGCCTAACACTGGCTAGTGGTGGTACATTCCCTGATGACGATGGTTCTCGTCAGGAGGTGAAGAACAGTCTGTTTGTTGGGGAGAGTGAGAACAGGGGCATGCCCATTCCTGACAACCGTATCTGGGGTCCCGGGGGACCCGACCTCAATGGGAGGACCCTGCCTCGAGGAGTTGACTTCCCTATCCGCGGCATGCAGATCTACGACGGGCCCATCAACGTGCAGAACTGCACCTTCAGAAAATACATTGCCCTGGACGGTCGACACACCAGCGCCTTCGGCTTCAGACTCAACAACTCCTGGCAGAGCTGCCCTAACAACAACGTCACCGACATCACCTTCGACGACGTGCctATAACGTCCCGGGTGTTTTTCGGTGAGCCCGGCCCATGGTTTAACAAGATGCAAATGGACGGTGACAAGACCACGATATTCCACGACGTGGACGGCTCGGTCAGTGAGTACCCTGGAGCCTTCCTGGTCAAAGAGGACAACTGGTTACTGAGACACCCTGACTGTATTGACGTGCCTGACTGGAGGGCTGCCATCTGTAGTGGGCATTATGCACAGATCTACATACAGACACGTAACCCTGCCAGTCTGAACATGCAGATGGTAAAGGATGAGtaccctgacagacccctgacaCTAGAGGGCGCTCTGGGCAAGAAGAAGCACTACCAGCAGTTCCAGCCCGTGGTCACCCTGGGTAAGGGCTACACTGTACACTGGGACCAGGCTGCTCCTGCAGAGATCACTGTGTGGCTCATCAACTTCAACAGgaacGACTGGATCAACGTAGGCTTATGCTACCCGCCAGGCACCACCTTCACGATCATCTCGGACATCCACAACCGGCTGACCAAGCAGACAAGGAAGACCGGTGTGTTCATGAggaccacacagagagacaagatCAACCAGTCTCACCTGTCCCGAGGCTATTACTACTGGGAGGAAGATACCGgCCTGCTGTTCCTCCGAGTGAAGGCCCACAATGAGAAGGAGGACTTTGCCTTCTGTTCAGTGAAGGGTTGTGAGAGGGTTAAAATCACAGCCGTTATCCCTAAGGGCAGCGGCCCCAGTGACTGCATGACACAGGCCTACCCCCTGCACGCAGAGATGCCCATCGTAGATGTGCCCATGCCAAGGAAACTGCCCAGCGCCAAGCTGcGCACCACAGACCACTTCCTGGAGGTCAAGCTGGAGTCCTACAACACACGCTTCTTCCACATCAAGGAGGACTTTGCCTACacagagGTTAACGGCAGGAAGTTGTACCAGCCAGATGATGGGGTGCAGCTGACGGTGATGGACGGCCATGACGGGACACTGGTGGAGAGCAAAGGCTTCAGAAACTCCATACTGCAGGGTGTACCTGCCCAGATAGAGAGCTATGTTAACAACCTGACAGaccactctatcgTCATAATAACGTCTAAGGGTCGCCTGGTAACCCGAGGCCCCTGGACCAGAATACTGGAACTCCTCGGGGCTGACAAGACCCTCAAGTtaagagACAAGCTAACGTTTGTAGGCTTCAAGGGCACTTTTCGACCTGACTGGGTCCGTATGGAGGTGAATGAGGAGAGAGCTAAGATCCATCAAGTCCTCCCTATCCCTGTGGTCAAGAAGATTAAGctatgaaggagagaggagaggaggaaccagGTGTAGTGGGGGGCACACACGAGACTACACctcccacacaacacacacacactgcccctaGGGCTGGAGTAGGTGAAAGTTGTTCCTATAACTACTGGTCCAAGATCAGATGTTTTTCACCACTAAAGATTAATTaaggtaatctgatcctagatctgtggttagggacGGTTTCAGCCCGGTGCTACAGAGTGTGGGCCGGCCAATCAAACGCATGCGTTTTTCTGTCACCTATCAACTTTCCCGCCATGCAGGTCTCTGTTTATGTGACAATGTTGACTATGTGAGTGATTCGACTGTATTGTTTGTTTGACTATACTTGACTTTTAAAACGCGAGAAGAGAGAAAAAATTACCAACAAATATTCCTTGTTTTTCATTCTACTCAGATTTCCTAAATGTTTGCACCTGTGTTTTCCAGTGGGAAGTTAACGTTGCTtaacacaatagaacaaaaaTGTAGACCAATAAAgtagaagtgagagagagattatgtGACTTTTAAAGTAGAACCAAAAGGTAAATTACAGGTTAAAGGCCCAGTGtggtcaaaaacgtgattttacagtattttatatatatttccacactgaggttggaataatactgtgaaatgatGATAATGCGCTATTAGTgtgagagctgtttgaaaagaccacctgaaatttcaacctgtttttggtgggatggagttttggcctgcctggtgacatcaccattagttaatagaccaataacgaAGAGAGTTACAAACCTCTCTACCAATTACAGCTAGAccacccccagccagtcccagctAAATCCTTGCTTCAGAAATTGCTCTTTGTTAAGAAGCTATTTGTATtactttttgaccattttaaatcaaaacaatcacttaattgttacccagaaatgatttgatattgagataaaaacaggtGCATTGGAGCTTTTTAAGATGAACATAAAAAACTTTTAGGTACATTAAGAGATATATTTACCCTTCTACTGGATATAAAACAGGTGCAGACATTTAGTCCATCTGTCCGGAAGATTCCATTCCAGAGAAGCTGTTTCCCTGTGTTTTATGTGAGGGCTCTAGATCGCTTACTTGATATTGTGTAATGTTTGGTTTCTAATAACTGTTCATATCAACGTTTGTGGTCCATCGGTCTGTTTTATTAAACATACCAGTATGTAAAGAAACCCCAAAATGATCTTGAATATATCCAAGGACATTTTTTGGTCACTTCTAAAGTGCTATCTGGTCTTAGACAATAATCCCAAATCAAAACTTTAAATGTTATTTAAGCAATTTATATATTGATTATAAATTGGCGATTTTTCTTCAAATCTGGCAAGAATCAGATAAACGTTTCCCTTTGCCCGAAATAGCTGGTCTTTTTTCGGACGTGATAGTTGTTAGTGTTTTGTatgtttaaatgtgtttttaaaatTCCACAGATTGATAACAGagatatattttatacttatttATTGTACAGACATAATTGAACAAAATCTACAAGGGACATATTTTGAGTTGTATTGTATTCGTGTCCTGAATTGTATGTAAGAATAATAATACTATAACATTTAAAACAATCCTACTAAACACTGCTATGGCATAATATCATCCTAGTTACCGCGCTGTTTTGTTTTAACCCTACACTAAATGGATGTGATGTATTATACATGACTTGGGCTTGTAAAGTAATTCAATCTCATGACTTAAAATCTTTGAATGACTTTTGtacataaataaatgaataagtgaATTTATAAGCCTGTGTGTGTGAACCCCAATAAAGACTTTCTGCACAGAAACACCAGTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU626889 lncRNA downstream 8426 83746765 ~ 83747797 (-) True G553428
TU626883 lncRNA downstream 13455 83742532 ~ 83742768 (-) True G553424
TU626874 lncRNA downstream 33110 83722854 ~ 83723113 (-) True G553415
TU626873 lncRNA downstream 33732 83722279 ~ 83722491 (-) True G553414
TU626872 lncRNA downstream 35229 83720783 ~ 83720994 (-) True G553413
TU627000 lncRNA upstream 2020 83914018 ~ 83914255 (-) True G553514
TU627002 lncRNA upstream 8033 83920031 ~ 83920237 (-) True G553516
TU627015 lncRNA upstream 42940 83954938 ~ 83955223 (-) True G553529
TU627033 lncRNA upstream 57602 83969600 ~ 83969846 (-) True G553547
TU627036 lncRNA upstream 59259 83971257 ~ 83971519 (-) True G553550
XM_036981230.1 mRNA downstream 17508 83736836 ~ 83738715 (-) True LOC110526710
XM_036981207.1 mRNA downstream 51259 83647271 ~ 83704964 (-) False LOC100136088
XM_036981208.1 mRNA downstream 51259 83647271 ~ 83704964 (-) False LOC100136088
XM_036981210.1 mRNA downstream 51259 83647271 ~ 83704964 (-) True LOC100136088
XM_036981211.1 mRNA downstream 51260 83647271 ~ 83704963 (-) False LOC100136088
XM_036981232.1 mRNA upstream 13576 83925574 ~ 83954299 (-) False LOC110526720
XM_036981219.1 mRNA upstream 66406 83978404 ~ 84089277 (-) False LOC110526723
XM_036981221.1 mRNA upstream 66406 83978404 ~ 84089277 (-) False LOC110526723
XM_036981216.1 mRNA upstream 66406 83978404 ~ 84089424 (-) False LOC110526723
XM_036981217.1 mRNA upstream 66406 83978404 ~ 84089424 (-) False LOC110526723
TU626345 other downstream 383027 83345201 ~ 83373196 (-) True G552980
TU625906 other downstream 1089778 82665477 ~ 82666445 (-) True G552584
TU625865 other downstream 1135979 82613557 ~ 82620244 (-) False G552558
TU625893 other downstream 1139029 82609918 ~ 82617194 (-) True G552571
TU626958 other upstream 22863 83934861 ~ 83954230 (-) True LOC110526720
TU627232 other upstream 186014 84098012 ~ 84175022 (-) True G553707
TU627835 other upstream 740089 84652087 ~ 84652416 (-) True G554191
TU627846 other upstream 801710 84713708 ~ 84727697 (-) False LOC110517996
TU627847 other upstream 801710 84713708 ~ 84727697 (-) False LOC110517996

Expression Profile


XM_036981215.1 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.25.
End of interactive chart.

XM_036981215.1 Expression in each Bioproject

Bar chart with 19 bars.
XM_036981215.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.