RNA id: XM_036981221.1



Basic Information


Item Value
RNA id XM_036981221.1
length 3695
RNA type mRNA
GC content 0.50
exon number 19
gene id LOC110526723
representative False

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 83978404 ~ 84089424 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCGAATGCATGTGAGGCTATAGGTGGCTGAACCGAGAGCTCGCGTGCCAAACCACTGAGCGGATTGTCTCTCCCGGGGCTCTCGAGCCGTATTGTGCGTCATTTTCATAGCTGCATCTTGTTTTTCTATCGAGGCAACATGGCAACTCCCGCCGCGGTCAATCCATCGGAGATGGGCAGTGAGTTGCCGGGGCCCGTTACTATGCCGGGGGCGGTGGTGGGGGCGGGCCAAGTGAGGATGGGCGGAGCCATGCCGGGCCGCGGGGGCAAGAGGAGATCCGGAGGGATGGACTTTGATGACGAGGATGGGGAAGGACCAAGTAAATTTTCAAGAGAGAACCACAGCGAGATAGAGCGGCGTCGCCGTAACAAGatgacccagtacatcacggAGCTGTCGGACATGGTGCCCACCTGCAGCGCTCTGGCCCGCAAGCCAGACAAACTGACTATCCTCCGCATGGCCGTGTCCCACATGAAGTCCATGAGAGGGACCGGGAACACGTCCACTGACGGGGCGTACAAGCCCTCCTTCCTGACCGAACAGGAGTTGAAGCACCTCATCCTGGAGGCGGCCGACGGCTTCCTGTTTGTGGTCGCCGCGGAGACGGGCCGCGTGATCTACGTGTCTGACTCGGTGACGCCGGTGCTCAACCACCCGCAGTCGGAGTGGTTTGGCAGCACGCTGTATGAACAGGTGCATCCTGACGACGTGGACAAGTTGCGGGAACAGCTCAGCACCTCAGAGAATTCCATGACAGGGCGTATCCTGGACCTGAAGACAGGAACAGTGAAGAAAGAAGGGCAACAGTCATCTATGAGGATGTGCATGGGCTCCAGACGATCCTTCATCTGCAgaatgagATGTGGCAGCACACCACTGGACCACATCTCTCTCAACCGACTGTCCAACATGAGGAAGAGATACAGGAACGGTCTGGGACCCTCGAAGGAGGGAGAGGATCAGTACTCTGTGGTGCACTGTACCGGCTACATCAAAGCATGGCCCCCAGCAGgTATGACCATACCAGAAGAAGACACAGAGGCAGGACAGACCAGTAAATACTGCCTTGTAGCCATCGGAAGACTGCAGGTGACCAGTTCTCCCGTTTCCATGGATATGAACGGCCTGACGGTTCCCACGGAGTTCCTGTCGCGCCACAACTCCGACGGCATCATCACTTTCGTGGACCCGCGGTGCATCAACGTGATTGGATACCAGCCTCAGGATCTGTTGGGGAAAGACATCCTGGAGTTCTGTCACCCAGAGGACCAGAGTCACCTGAGAGAGAGCTTTCAACAGGTGGTAAAGTTGAAAGGCCAGGTGCTGTCTGTAATGTACAGGTTTCGTATGAAGAACAGAGAGTGGATGTTAATCCGCACCAGCTCCTTCACCTTCCAGAACCCCTACTCCGATGAGATCGAGTACATCATCTGTACCAACACCAACGTCAAgcagctccaacagcagcagcaggcagAGCTGGAGGTCCATCAGAGAGACGGCCTGACAGCCTACGACCTATCACAGgTGCCCGTTCCCAGTGTGGGAGGAGGGGTTCACGAGGCGGGCAAGAACACTGACAAGACGGACACCATGTTCTCACAGGAGAGAGACCCACGCTTCGCTGACATGTACTCCGGCATCTCTGGCTCTGGTGAGAAGAAGATGATGGTTCCTTCGTCTACAGCAGGAGGTCAGCAGCTGTACTCCCAGAACTctcccttccagccaggacactCTGCCAAGAGCTTCAGCTCCTCAGTGATCCATGTCCCGGGGGTGAACGATATCCAGCCGTCGGGATCGTCCAATCAGAACCTAGCTCAGATCTCCAGACAGCTCAACCCAGGACAGGTGGCCTGGACTGGCAACAGACCCCCGTTCTctggccagtCCACTAAGGCCCAGTCCAGTCCGTTTGGGATAGGCTCCGGCCACAGTTACCAAGGAGACCCATCTTCCTATAGCCCCCTGTCCTCCCCTGCCACCTCATCGCCCAGCGGCAATGCCTACTCTGGACTGGCCAACCGGAGCACGGCGTTCGatgtgtcAGGAGAGGGCAGTCAGAGTgggggtcagttccagggtcggCCCAGTGAGGTCTGGTCCCAATGGCAGAACCAGCACCATGGCCAACAGGGAGGAGAGCCACACTCTCACCCCAACCCCTCCCAGACAGAGGTGTTCCAGgacATGTTGCCGATGGCAGGAGACCCAACACAAGGAACAGCCAACTACAACATTGAAGACTTTGCTGATCTGGGCATGTTCCCTCCCTTCTCCGAGTAGAACCCTTTAACGTTCTATCAATGGAACACTGCTCTGTTCTTCCACTAGAACCCTCTGATAGAGGAAAAGGAATAGAACACAATGTGCTGGTTCCTTCATGGCTccccaacctcacacacacacacacactttatcacACAGTGAATGTCCAGATGCACCCTCTCATAAACACACTCTGACACATACCTGTTTCCTTTACGAGAAGAGAGTTGGTTCTATAGAAGACTGGTACATTGCTAGTGGTGTGCTGACCTTTTCCTTTGTAATAATGTCTTCTTCATTCACTTAAATGATGCCTGTTCTTTTAACAAAGGCTTGTGAATTTAAAGGTGCAATCTGTAACTTTCATTTCCCCTAGTGGCATCTTGAAGTACTACAAAATATGCCAAGAAGCAGTAAAAAAATACAAAGCCTAGAAAATTCACCAGTGCAGACACCCCCCTTTCGTTTGCAAACCATTGCAGAGGCAGGCAGGACTTTTGGGGGGGAAACAAAAATGACAGATTGCACCTTTTAAGCTGCCAATATCCACTTTGCACTCCACTCTGCCAAACTGCTCCAGGCCAAGAGACACTCACCACGCTGATCAATGTTGGTACCATCGATACATATTATCATACAGGATGCCACTGCTGCTCCTCCCTCAGTATTACATTAAGCTTTATGCTGTAAATTATACCTATATGTAGTGATGTTCATAACACCTAGATAAAACCTACGGAAGTCTAGAAGGATTCTGTGTAGAAAAAATAAAGATTCCACTCACCGGCAAAAGTTGCTAAGCTACAATGCTTAAGTGCACTTCATCGAAGCTAACCGCTAAAACTCACCAGCTTGCTAAAAAGGGAAAAACCGCCATACCGCCAAAGCAAcgcagtacagtatatatactagTTTAGTGTATCCTTGTGGCTCTCGCTGCTCTACTTTATAACTTTATTATATTATTCTCTTTCCTGATTATTAACAGAGACTGAATTCTACTTTATAGCGAGGGAACTTTTACATGATAGATTGTGTACCGTGTCTCTGGTTAATGACTGATGGGACAGAATGATAGATTGTGTACCGTGTCTCTGGTTAATGACTGATGGGACAGATTCTACAACTGGAATCCTTTTGctaaaaaaaatatctaaaaatgtatgtttttgtaAATAATGTGATTTTTATGTTGACTCGTTACTTTTACACAGTATCCGTTGTTTTTTGTGTAGGTTTATGTAGGTGTCATCAATGTGTGCAATGTGAGTACATATTTAACTATCGGTACTTAGTTTAGTCTTAATTGTACATTGAGTTTAAGGAACCTGTATAAAAGTGTGTAAATGTTACTCATTatttttgtttaacacatttttgtgcttgtgaaaataaatgtttattggtTACGTGGCTTCTAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU627036 lncRNA downstream 6885 83971257 ~ 83971519 (-) True G553550
TU627033 lncRNA downstream 8558 83969600 ~ 83969846 (-) True G553547
TU627015 lncRNA downstream 23181 83954938 ~ 83955223 (-) True G553529
TU627002 lncRNA downstream 58167 83920031 ~ 83920237 (-) True G553516
TU627000 lncRNA downstream 64149 83914018 ~ 83914255 (-) True G553514
TU627238 lncRNA upstream 12404 84101681 ~ 84104269 (-) True G553711
TU627247 lncRNA upstream 53019 84142296 ~ 84143542 (-) True G553720
TU627255 lncRNA upstream 84522 84173799 ~ 84174220 (-) True G553727
TU627265 lncRNA upstream 117145 84206422 ~ 84209097 (-) True G553734
TU627279 lncRNA upstream 152133 84241410 ~ 84244889 (-) True G553748
XM_036981232.1 mRNA downstream 24105 83925574 ~ 83954299 (-) False LOC110526720
XM_036981212.1 mRNA downstream 66404 83756223 ~ 83912000 (-) False LOC118964944
XM_036981214.1 mRNA downstream 66404 83756223 ~ 83912000 (-) True LOC118964944
XM_036981215.1 mRNA downstream 66406 83756223 ~ 83911998 (-) False LOC118964944
XM_036981236.1 mRNA upstream 136984 84226261 ~ 84250541 (-) True LOC110506870
XM_021586751.2 mRNA upstream 161719 84250996 ~ 84266431 (-) False LOC110506882
XM_021586750.2 mRNA upstream 161719 84250996 ~ 84266447 (-) False LOC110506882
XM_036981237.1 mRNA upstream 161719 84250996 ~ 84267954 (-) False LOC110506882
XM_036981238.1 mRNA upstream 162113 84251390 ~ 84267379 (-) True LOC110506882
TU626958 other downstream 24174 83934861 ~ 83954230 (-) True LOC110526720
TU626966 other downstream 98900 83876214 ~ 83879504 (-) False G553491
TU626967 other downstream 98900 83877777 ~ 83879504 (-) False G553491
TU626965 other downstream 98900 83878708 ~ 83879504 (-) True G553491
TU626345 other downstream 605208 83345201 ~ 83373196 (-) True G552980
TU627232 other upstream 8735 84098012 ~ 84175022 (-) True G553707
TU627835 other upstream 562810 84652087 ~ 84652416 (-) True G554191
TU627846 other upstream 624431 84713708 ~ 84727697 (-) False LOC110517996
TU627847 other upstream 624431 84713708 ~ 84727697 (-) False LOC110517996
TU627848 other upstream 625232 84714509 ~ 84720438 (-) True LOC110517996

Expression Profile


XM_036981221.1 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 25.
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XM_036981221.1 Expression in each Bioproject

Bar chart with 20 bars.
XM_036981221.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
End of interactive chart.