RNA id: TU630905



Basic Information


Item Value
RNA id TU630905
length 824
RNA type TUCP
GC content 0.51
exon number 9
gene id LOC110526751
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 87773201 ~ 87860425 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gacagacagaggcatgaGAAGACCTGCAACGTCAGCGCTCCCTTCATGAGAGCCAAGACGCAGtGACGGAGAGGAGGTTACCTTAGAAGACAATTTCAACGACATCTTTCACCCGCTGAAATACGAGGCTGACCTCCTATTTACAAGGGACTCAAACCCCTCTGGCTGTGAAATCAAAGCGGACCTCTCCCTGGAGATACCAGGAAATATTGGTCCTCCATTCAACTTCACCTTCCAGATTCAGAACCTGGGCTTCTTTCCCGTGAGAGACCTGCAGTTGAATATAGAAATTCCAGAGATGACCAAAAACGGGAACCAGCTGTTGCAGATATCGGACTTCCATATTGACAAAACAGACGGTACCCGCTGCATACCCCCTCAACATGTGGCACAGAGCAGGGCGTCCCCAGAAGACCTCTCTCGAGTCTCACGCCTGAACCAGTCCAATACTCTGCCTCTGCCGGTCCAATGCACTGTCAACCTGAACCCCTACAAGGAAGTCAGCATCAGAATCAGGGGGGCATTGCGGTTGGACGCCTTGCATGCTCTGAGGTTCAAAGTCCTGGAACTGGTGACGAGTGCAACAGTAGAACTTCCACCTTCAAGCCCCATGTTTCTTCATGAAGAAAGGCCTGTCAGACATATAATCCTGGAGATTAGGAAAGAAGGGGATTACAGAATCTCAATCTGGATTATCATTGGGAGCACGCTGGGAGGGTTGTTGCTGCTGTCCCTGCTCAGCCTAGCTCTATGGAAGcTTGGCTTCTTCCagaggcagaagaggagagaagaggatgagCAGGAGACCAATGGAAAGGTGGCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU630952 lncRNA downstream 4104 87768789 ~ 87769143 (-) True G556709
TU630951 lncRNA downstream 5566 87766489 ~ 87767681 (-) True G556708
TU630950 lncRNA downstream 8404 87764422 ~ 87764843 (-) True G556707
TU630945 lncRNA downstream 8955 87763158 ~ 87764292 (-) True G556705
TU630946 lncRNA downstream 11087 87759659 ~ 87762160 (-) False G556706
TU630962 lncRNA upstream 8531 87793883 ~ 87794322 (-) True G556719
TU630999 lncRNA upstream 97903 87883255 ~ 87883476 (-) True G556756
TU631001 lncRNA upstream 101693 87887045 ~ 87887262 (-) True G556758
TU631009 lncRNA upstream 115864 87901216 ~ 87902436 (-) True G556766
TU631021 lncRNA upstream 189456 87974808 ~ 87978623 (-) False G556776
XM_021607941.2 mRNA downstream 53489 87711280 ~ 87719758 (-) False LOC110526757
XM_021607942.2 mRNA downstream 53489 87711280 ~ 87719758 (-) True LOC110526757
XM_036981388.1 mRNA downstream 53525 87711280 ~ 87719722 (-) False LOC110526757
XM_036981390.1 mRNA downstream 62483 87702276 ~ 87710764 (-) True LOC110526758
XM_036981391.1 mRNA downstream 64790 87702276 ~ 87708457 (-) False LOC110526758
XR_005052276.1 mRNA upstream 206146 87991498 ~ 87996886 (-) False LOC110513137
XM_036981395.1 mRNA upstream 206146 87991498 ~ 87996887 (-) False LOC110513137
XM_036981397.1 mRNA upstream 206146 87991498 ~ 87996888 (-) False LOC110513137
XM_036981398.1 mRNA upstream 207554 87992906 ~ 87996887 (-) True LOC110513137
XM_036981410.1 mRNA upstream 700105 88485457 ~ 88529567 (-) False LOC110517398
TU630611 other downstream 221857 87546589 ~ 87551390 (-) True LOC110513865
TU630566 other downstream 275155 87483766 ~ 87498092 (-) True LOC110506946
TU630563 other downstream 309392 87457977 ~ 87463855 (-) False LOC110506946
TU629608 other downstream 1315282 86455124 ~ 86457965 (-) True G555617
TU629594 other downstream 1325693 86439622 ~ 86447554 (-) True LOC110526741
TU632049 other upstream 1373872 89159224 ~ 89159885 (-) True G557663
TU632545 other upstream 1835996 89621348 ~ 89621755 (-) True G558051
TU632626 other upstream 1935123 89720475 ~ 89721154 (-) False G558124
TU632786 other upstream 2080616 89865968 ~ 89866927 (-) False G558246
TU632790 other upstream 2080616 89865968 ~ 89868057 (-) False G558246

Expression Profile