RNA id: XM_036981409.1


Basic Information

Item Value
RNA id XM_036981409.1
length 2839
RNA type mRNA
GC content 0.60
exon number 22
gene id LOC110517398
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 88485457 ~ 88531275 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCTGGCCAATTGTAAGCGAGGAGGAAAGGGGCTTAAAATCAACAATAAAGATCGAGAGATCGGAGGGTGGAAGTGTGTTCTCCGCCGCGGAGGATTGGCATTGTCCGACCGCTTGTGCGCACAGGGAGGGGTGGCGGACTATCGCACATCTACTCGGATTACTGAAGTATCCCCCGATTTCCCTCAAAAAAGGATACATTCAAGATGTATCCACAGGGCCGGCATCCGGCACCACACCAACCAGGGCAGCCTGGCTTCAAGTTCACCGTGGCCGAGTCCTGCGACAGGATCAAAGACGAGTTTCAGTTCCTGCAGGCCCAGTACCACAGTCTCAAAGTGGAGTACGACAAACTGGCCAATGAGAAGACAGAGATGCAGCGTCACTATGTCATGTACTATGAGATGTCCTATGGGCTGAACATTGAGATGCACAAACAGaCTGAGATTGCTAAACGTCTCAACGCAATTCTCGCACAGATCATGCCTTTCCTGTCACAAGAGCACCAGCAGCAGGTTGCTCAGGCTGTTGAGCGTGCCAAGCAGGTCACGATGACTGAGCTCAATGCCATCATCGGGGTACGTGGACTTCCCAATCTGCCTCTCACCCAACAGCAACATGCTGTCTACCCAGCCTTCATGCAACAGCAGCTCCAGGCTCAGCACCTGTCCCACGCTGCCCACGGTGGGCCACCCATCCAGATGCCCCCGCACCCCTCGGGCCTACAGCCCCCCGGCATACCCCCCATCCCTGGTGTGGCAGGCTCCGGTCTGCTGGCGCTGGGTGCTCTGGGCAGCCAGGCCCACCTGCCCTCCGTCAAGGACGAGAAGAACAACCACGACCTGGAGCACAGAGGCCTGTCATCCTTTCACTCCCCCCTGGCGATCCCTCTGGTAAAAGAACGAGAGTCGAGCACGAATAACTCTGTGTCTCCGTCGGACAGCCTGCGTGCAGCCAGCGACAAACACCGCAGTTCCTCTGATTATAGCATGGACTCCAAGAAACGCAAGGTGGAGGAGAAGGACGCTATGAGCAGATACGACAGCGATGGAGACAAAAGTGACGACCTGGTCGTGGATGTGTCCAATGAGGACCCAGCCACTCCCAGGGCCAGCCCCGCCCATTCTCCTCCAGAAAACGGTCTGGACAAATCACGGGCCCTGAAGAAGGACGCCCCCAACAgccccgcctccgtggcctcctcCGGCAGCACGCCCTCCTCCAAAGCCAAGGACCACGCccacAATGATAAGTCATCCACGCCGGGCCTGAAGTCTAACACCCCCACACCTCGTAACGATGCCCCCACACCAGGCACCAGCACCACCCCTGGTCTACGGCCCATCATGGGCAAGCCCTCGGGCATGGAGGCACTGGctgCTCCAGCCCTGCGTACTCCTTTGTCCATAGCTGGCTCCTACGCCACGCCCTTCGCCATGATGGGCCACCACGAGATGAACGGCTCCCTGACCAGCCCCGGGGTCTACGCCGGCCTCCACATCTCCCCCCAGATGAGCGTGGCCGCTGCTGCGTACGGACGCTCGCCCATGGTGGGGTTTGACCCTCACTCCCACATGAGACCAGGCCTGCAAGCCAGTCTCACATCCATCTCTGGAGGGAAACCTGCCTACTCCTTTCATGTGAGCGCCGACGGCCAGATGCAGCCGGTGCCCTTTCCCCCGGACGCTCTCATAGGCCCGGGCATCCCACGCCACGCTCGCCAGATCAACACGCTGAGCCACGGCGAGGTGGTGTGCGCCGTCACCATCAGCAACCCCACGCGCCACGTCTACACCGGTGGCAAGGGCTGCGTTAAGATCTGGGACATCAGCCAGCCGGGCAGCAAGAGTCCCGTGTCCCAACTGGACTGCCTGaaCAGGGACAACTACATCCGCTCCTGTAAGCTCCTCCCTGATGGCCGCACCCTGATTGTGGGCGGTGAGGCCAGCACGCTGACCATCTGGGACCTGGCCTCTCCGACGCCACGTATCAAGGCGGAGCTCACCTCCTCGGCCCCCGCCTGCTACGCACTGGCCATCTCCCCCGACGCCAAAGTCTGCTTCTCCTGCTGCAGTGACGGGAACATCGCCGTCTGGGACCTGCACAACCAGACCCTGGTCAGGCAGTTCCAGGGCCACACGGACGGCGCCAGCTGTATCGACATCTCCCACGATGGGACCAAGCTGTGGACCGGAGGTCTGGACAACACCGTCCGCTCATGGGACCTGAGGGAGGGTCGCCAGCTCCAGCAGCATGACTTCACCTCCCAGATCTTCTCTCTAGGCTACTGCCCCACAGGGGAGTGGCTGGCAGTGGGCATGGAGAGCAGCAATGTGGAGGTTCTCCATCACACCAAGCCGGACAAGTACCAGCTCCACTTGCATGAGAGCTGCGTCCTCTCGCTGAAGTTCGCCTACTGTGGTAAATGGTTTGTGAGCACGGGGAAGGACAACCTCTTGAATGCCTGGAGGACTCCGTACGGTGCCAGCATATTCCAGTCAAAGGAGTCCTCTTCCGTCCTGAGCTGCGACATCTCTGCAGACGACAAGTACATTGTGACAGGCTCCGGAGACAAGAAGGCCACAGTGTACGAGGTGATCTACTAGGAACACCAGTTTGACCCCTCCTAGTGGCCTGACGAGGGGAGCTGctagaccctcctcctcctcttacttCACTCACCACATCCCCTAACCTCAAAGACCACCAGGGATTGGACTACAGACCATGTCGGCCGATACCGCTCCGGGATTGGTGCTCAGAAGGCACCATGAACTGCGCTTGGCAGTTGGCCTGGCTATGATTGGCTATCGGTGCAGACTGTAACCCAATGGGCACT

Function

GO: NA

KEGG:

id description
K04497 GRO, TLE; groucho

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU631530 lncRNA downstream 7707 88477031 ~ 88477750 (-) True G557207
TU631457 lncRNA downstream 40702 88443873 ~ 88444755 (-) True G557146
TU631400 lncRNA downstream 69221 88345097 ~ 88416236 (-) True G557100
TU631540 lncRNA upstream 8301 88539576 ~ 88540069 (-) True G557217
TU631542 lncRNA upstream 12068 88543343 ~ 88543564 (-) True G557219
TU631544 lncRNA upstream 14021 88545296 ~ 88545523 (-) True G557221
TU631546 lncRNA upstream 20089 88551364 ~ 88551711 (-) True G557223
TU631549 lncRNA upstream 26006 88557281 ~ 88557607 (-) True G557226
XM_036981397.1 mRNA downstream 488569 87991498 ~ 87996888 (-) False LOC110513137
XM_036981395.1 mRNA downstream 488570 87991498 ~ 87996887 (-) False LOC110513137
XM_036981398.1 mRNA downstream 488570 87992906 ~ 87996887 (-) True LOC110513137
XR_005052276.1 mRNA downstream 488571 87991498 ~ 87996886 (-) False LOC110513137
XM_036981392.1 mRNA downstream 625032 87773201 ~ 87860425 (-) False LOC110526751
XM_036981419.1 mRNA upstream 167238 88698513 ~ 88784021 (-) True uacab
XM_036981420.1 mRNA upstream 270403 88801678 ~ 88815743 (-) False LOC110527001
XM_036981421.1 mRNA upstream 270403 88801678 ~ 88815746 (-) True LOC110527001
XM_021607972.2 mRNA upstream 285796 88817071 ~ 88819232 (-) True LOC110526783
XM_036981422.1 mRNA upstream 297422 88828697 ~ 88951131 (-) False LOC118936482
TU630905 other downstream 700105 87773247 ~ 87785352 (-) True LOC110526751
TU630611 other downstream 934067 87546589 ~ 87551390 (-) True LOC110513865
TU630566 other downstream 987365 87483766 ~ 87498092 (-) True LOC110506946
TU630563 other downstream 1021602 87457977 ~ 87463855 (-) False LOC110506946
TU629608 other downstream 2027492 86455124 ~ 86457965 (-) True G555617
TU632049 other upstream 627949 89159224 ~ 89159885 (-) True G557663
TU632545 other upstream 1090073 89621348 ~ 89621755 (-) True G558051
TU632626 other upstream 1189200 89720475 ~ 89721154 (-) False G558124
TU632786 other upstream 1334693 89865968 ~ 89866927 (-) False G558246
TU632790 other upstream 1334693 89865968 ~ 89868057 (-) False G558246

Expression Profile