RNA id: XM_036981428.1


Basic Information

Item Value
RNA id XM_036981428.1
length 2889
RNA type mRNA
GC content 0.50
exon number 7
gene id LOC110506978
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 88956590 ~ 88964509 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTCATTGTCCAGGAGATAATATAGTTAAAGAGAAGGAACGCTAAGTGGGTGTGCCTTGCCATCCATTAGTTTAGCGGTCACTTCTTCAGTGAGGAGCGTCGACTGCTGTCTTGAGGAGTGGCGAAGGCTCGAGGACTGCCATGCGGTCACTCTCTCGTGCGCCACTCAGCCGGTGAGAGTCGAAGAGGATGGAAGTCCGTTCACTGtactgaaacagagacagaaacactacagagagagagagagagaatttggcTAGTCTGAACGCTTGGTCCAGCAACAGTATATTTAATCTCGGACTAGACCTCTGCTTGTGTCGGTGATTTTTGTTCAACTTTTTGATGAAAAGTTGTTTCCTAAGCCTAGGAGTACTGTGCTCTTTTCCAGAAAGAAAGaCTTCCAGGAATGGAGTCGATACCCAATCAACAACCAGCGGGACGAGACTCCAGCTCTTCCCCCAGCTCCAAGCAGGACGTTCAGCCCTTCTCCAGCCCCATCTCCCTGAAGCCTAACCAAGTCAGCGAGACCGCGTTGTATGGAGTGCACATCGTGTCTTTGGTCATAGATGGCCAGGAAAGACTTTGCTTGGCGCAGATATCCAACACATTGCTAAAGAACTACAGTTACAACGAAATCCATAACCGACGCGTTGCTCTTGGAATCACCTGCGTCCAGTGCACGCCCGTCCAGCTCGAGATACTGAGGCGCGCTGGTGCCATGCCAATCTCCTCGCGGCGCTGCGGTATGATCACTAAGCGGGAGGCGGAGAGGCTATGTAAATCATTCCTCGGTGCTCACAACCCACCAAAGCTACCGGAAAATTTCGCTTTTGATGTCTCTCATGAATGCGCGTGGGGAAGCAGAGGTAGCTTCATACCTGCCAGGTATAACAGCTCGAGGGCCAAGTGCATTAAATGCACATATTgtaacatgtatttttccccGAATAAATTCATATTCCACTCCCATCGCACTCCCGAGTCCAAGTATACACAGCCAGATGCAGCAAACTTCAATTCGTGGAGGCGCCATCTCAAACTAACAGACAAAAGCTCTTCGGATGATGTTGCCCACGCGTGGGAGGATGTTAAAGCGATGTTCAACGGGGGAAGTCGTAAGAGGACGCTACCTATGAGTGGGTCATCCATGTCCTCTCCTTTGAAGTCACATTCCACCAGTAACCCAACCCAAAGAAGTTCCCCCGAGGTACCCCATAAAACGTTGCGCTGTGACGAAGACCGAGGTAGGCCTAACATCAGTCTGTCAAATGGCGTCCGGAACTACCCGGTTATCCCTGTGCCCAGTAAGAGCTTTGGGATGCTTCAAAAGATCCAGCCACCGCTCTTCCCCCACCCGTATGGATTCCCTGCGTTTGGACTGTGTCAAAAGAAGGACGACGGAGTGGGAGAGACAAATAAAACCAACGTTTCGGGTGTCTTTTGGCCAGGAGCAAAGGACAGTATCTATCCCTCTTTCCCGATGTTTTGGCCAACAGCAGGTGGCCTGCCGATGCCACCGTATCAACAGTCACCACCCAAACCACCCACAGAGCTCTTAAGTGTCAGACAGAGTGATCTCGAGTTATCGGATCAAAGTGACCGGTGCGCAAACACACCTAAGGATAGCTTTCAAGACAGCGAACGGTGCTCCAGCTCACAATCCACCCGGAACGAGGAGGATAAATCCGGGGATGAGGCCCGGTCGACGGAAGGACTCCCCACAACTCCACGGAAGATAAATTACATCTCTGCGTTCAGACCTGTGGTGAAAGACGCCGAAAGCATTGCAAAGCTATACGGCAACAGGGACACGTACAGCGGTGTGCGCTCTGGTTACCTATCGCCAGATTTCGTGAGTGAAAGTTCTAGCTATAGGTCTATGTCCCCGGATGTGGATAGCGTGGACGACCCAGACGTTGACGTGGAGTCAAACAGGGCACACGAGGATGAAGAGTCAGTCCAACTGTCAGTGGAGGACCGTCAGAGTCCCCCGCCCCTCAACTCAGCCCATTCCGGGCCTGAAGATAGTCGAGAGCTGGGGACAAGTCCAGGACCACAACCGGAAGATCCCCACTCCGGGTCCTCTGATGACGAGAGGCAGGGTGGACAGGTGTCAGAGCGCCATGATACACCGGTGTACGAAGTGTACACACATGAAAAGGATGGACACATGCCTTTGAACGGTCCATCTACGTTTGGATCAAAACATAGCAGCCCATTGCAATCGAACGGTGTACTCCATGTTTCCGACCCACACAAACAACGTTCTCCTACAAGAGAGGACGTTCCACAGAGAGCCTATCAGGACCAAGCAAAGGAAAGCCCACcatGCGATGGGGCATTACGTCAGCATGACGTCAGTAGGATCCACGAAAAAGATATCGAAAACATGGCTAAAGATAATTTTCAGGACCAAATGAAGAGGGAACTGTCCTACAGAGAAGAGATGGTCCAACAACTTCATATTGTCCGAGACACGTTGTGCAGCGAGTTGGATCAAGAAAGAAAGGCGCGTTATGCAATACAACAGAAGCTGAAAGGTAATTTATATGGTCCAAAAACAGAACATGTATCCAGTTTCAGTCCATTTGTGAATTAATTCAATGGCTAGCTGGGCAAGAGCATGGCCTTCTAATGGACTTTGATTATGACTAGTAGTATTTGTCAAATTACAACCGTACCTATGCAAGTGCTACTTTTTATTCTTCGCTAGCATGTGTGTCCTTATGATATGCTAATTCCTAGCACATTTGATATTGAGCAGAACTACTGTGACGTGTAGACTGAACTTAGAGGAAATAACGACTAGAGGAAAGAACGACTAGAGAACACAGTGTGGATAGACAAATAACAAAGACATTTAATCTGCCCAGTGTTTGAAGTGACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU631901 lncRNA downstream 517 88955361 ~ 88956545 (-) False G557543
TU631902 lncRNA downstream 566 88955361 ~ 88956496 (-) False G557543
TU631903 lncRNA downstream 598 88955361 ~ 88956464 (-) True G557543
TU631878 lncRNA downstream 13463 88943341 ~ 88943599 (-) True G557523
TU631872 lncRNA downstream 19941 88924912 ~ 88937121 (-) True G557518
TU631961 lncRNA upstream 5975 88970484 ~ 88971015 (-) True G557591
TU631962 lncRNA upstream 8366 88972875 ~ 88973694 (-) True G557592
TU631968 lncRNA upstream 20601 88985110 ~ 88985353 (-) True G557598
TU631971 lncRNA upstream 34814 88999323 ~ 88999534 (-) True G557600
TU631972 lncRNA upstream 53323 89017832 ~ 89018153 (-) True G557601
XM_036981422.1 mRNA downstream 5931 88828697 ~ 88951131 (-) False LOC118936482
XM_036981423.1 mRNA downstream 5931 88828697 ~ 88951131 (-) True LOC118936482
XM_021607972.2 mRNA downstream 137830 88817071 ~ 88819232 (-) True LOC110526783
XM_036981421.1 mRNA downstream 141316 88801678 ~ 88815746 (-) True LOC110527001
XM_036981420.1 mRNA downstream 141319 88801678 ~ 88815743 (-) False LOC110527001
XM_036981433.1 mRNA upstream 10062 88974571 ~ 89111594 (-) False LOC110526789
XM_036981434.1 mRNA upstream 10062 88974571 ~ 89111595 (-) True LOC110526789
XM_036981436.1 mRNA upstream 263032 89227541 ~ 89267484 (-) False LOC110526791
XM_036981435.1 mRNA upstream 263032 89227541 ~ 89267492 (-) True LOC110526791
XM_021591141.2 mRNA upstream 352616 89317125 ~ 89346431 (-) True LOC110509922
TU630905 other downstream 1171710 87773247 ~ 87785352 (-) True LOC110526751
TU630611 other downstream 1405672 87546589 ~ 87551390 (-) True LOC110513865
TU630566 other downstream 1458970 87483766 ~ 87498092 (-) True LOC110506946
TU630563 other downstream 1493207 87457977 ~ 87463855 (-) False LOC110506946
TU629608 other downstream 2499097 86455124 ~ 86457965 (-) True G555617
TU632049 other upstream 194715 89159224 ~ 89159885 (-) True G557663
TU632545 other upstream 656839 89621348 ~ 89621755 (-) True G558051
TU632626 other upstream 755966 89720475 ~ 89721154 (-) False G558124
TU632786 other upstream 901459 89865968 ~ 89866927 (-) False G558246
TU632790 other upstream 901459 89865968 ~ 89868057 (-) False G558246

Expression Profile