RNA id: XM_036981433.1


Basic Information

Item Value
RNA id XM_036981433.1
length 3541
RNA type mRNA
GC content 0.47
exon number 22
gene id LOC110526789
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 88974571 ~ 89111595 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTATATCCGGTTGGAAATACGAAAACTTCCGGTGAACTTCCTGGTTTTGTTTGCATAGCGGCTAACTTGGCTAGCTATGTCATTTCCAACTATTTAAAACGCTCTTTGTATGTCCGTGAGTCAAACTGTGTTGGAAACGTTAAAACGCACTCTCTCGTCGACAAGACCTGCAATGGCTTGCTCTTAGTCATGCAAGTAACGTTAGTTGAAATGTAGTAACTGTTAGCTAACGGCTAACTTGACAGCTAATGTAGCTAGGATAGGAATAGGATGTGCTGTTAGGAAGTTAGCCAGCCAACACTGATTATGTTTCTGCTTATTCGTCTGTTATGCTTCTACTTGTTTTAAATAACTTCTGCGCTATGGACACCGAGGGAATAGAGATCCGTATAAAGACTCCCGTCGGGGATATGGACTCATCCGTGGACTGCCCATCACTTTTGAGCTTCAATGACTTGTTGGTCGCTATAAGGGATGTCATGCCCGAAACCACAATCACTGCGTTTGAATATGAGGATGAGGTGGGCGATAGAATCACTGTGAGGAGTGATGAAGAACTCAAAGCCATGTTGTCATATtactGCAATAATGTGAAGGAGCAGCGGATGAATGGCCTACTGCCTGAGCCTCTCCAGATATTTCCTCGagCCGGCAAGACTCCAGGGATCCGGAACATACACGGCCTGAAGGTGAACACAAGGCCCAATGACTGTTCCCCCGCCGCCATCGGCTCTATGCCCAACAATAGTCCCAGTCTAAAGAAGTCCTCCGCAGAGCTAAAGAAGATTTTGACTAATGGACAGATCAATGGCCAAGACATACAATACCAGGAGCAGCTTGGCCATGGAAACGGAGGGACCGTGTACAAAGCGTACCATCTTCTCGGCAACAGAGTGTTGGCGGTGAAGGTCATTCCTCTGGATATCACAGTGGAGCTACAGAAACAGATCATGTCCGAGTTGGAGATCCTCTACAAGtgTGATTCCTCCTACATCATAACCTTCTACAGTGCCTTCTTTGTGGAGAACAGGATCTCCATATGTACAGAGTATATGGACGgTGGCTCTCTGGACGTATACAGGAGGATCCCAGAACATGTGTTGGGTAGGATCTCTGTGGCGGTTGTGAAAGGCCTAACCTATCTATGGAGCCTGAAGATTCTTCACAGAGACGTCAAGCCTTCCAACATGCTGGTCAACACTAGAGGTCAAGTGAAGCTCTGTGACTTTGGAGTCAGCACGCAGTTGGTGAATTCCATCGCCAAGACGTATGTGGGAACTAACGCCTACATGGCACCGGAGAGGATATCTGGGGAGCAGTATGGTATCCATTCAGACGTCTGGAGCGTGGGCATCTCCTTCATGGAGTTGGCACTGGGCGCTTTCCCCTATCCACAGATTCAGAAAAACCAAGGATCTTTAATGCCTCTCCAGTTACTGCAATGCATCGTTGATGAGGAGCCTCCTGTTCTTCCTGTGGGTCAGTTCAGCCAGAAGTTTGTCCACTTCATCACACAGTGCATGAAGAGACTCCCCAAAGAGAGGCCTGctcctaccaaccttatgGACCATGCCTTCATCCTGCTCTACGATGATGGCAATGCGGAGGTGGTGTCCATGTGGGTGTGTCGCtgcctagaggagaggagagcccagGCTCAGGGACAGATGTGACCCCGTAAACACAGGAGATCAAGTTATAGCGGTCAAGGGTATCATGTAGGGCCAGGATGATACCAGTATCTCTATACTCGTTAATATCGTGGCAAAGAAACAAAACACCAAGCGCTTTTAACTTCGTAAGGAAAACAGtcctgatgttggaaacaaaacattatgatgtcatccagagtcacatgtatttattttttatctatagctcacaatattttacatacaacAGGTGTTTAAAGGACTgaaagagtttggtctgctttgtgttttcatttttgccatagAAAcaatattgcgatactggtatggtcccggcCCTAATATCATGCCCCAATCTCTCTGGACTTTCACCATTCGTGAACCCCAGGAGTGGACAGTAAACATCAAAGACACGGTTTCTAAAACGTATTGAAGACGTCCATGGTGTAAAGAGGGCGTCTGTACGTCCAACTTCAGTAAGCCAAGAGGATACTGGATCTTTACAACTGAACGTTCGTTACAAGTGGAACTTTGTTATCTGGGCACTTGGCAtgttgactgatgtcttgatggtGTCTCCTGGCGACTCTTACACTCCAAACCTGGCTGTGTGTTGACGCTGCTTTATCAATGAATTTACAAGTGAGTGGGACTTATTCCGTGACTGTTTGCCTACTTAGTTATGTCTAACTCAGAGAGGCTTTAGACAGAATGTCAGAGTAAGTGATCAACGATGAGATGGGGCTTGAAAACCCAAATGGCTTTACAATAACAAATAAGTGCTATTTTCCAGGATGACGCTCGGATAACCTGTTACACTTTATTGTTGGCAGCTTTCTAGTGAATGTGGAGGTGTGGCGGTGTGTACGGCAGTAACCCATGTGTGTGTACGGCAGTAACCCATGTGTGTGTGCGGCAGTAACCCATGTGTGTGTGCGGCAGTAACCCATGTGTGTGTGCGGCAGTAACCCATGTGTATGCACGGCAGTAACCCATGTGTGTGTCGGTATGTACGGCAGTAACCCATGTGTGTGTGCGGCAGTAACCCATGTGTGTGTCGGTATGTACGGCAGTAACCCATGTGTGTGCCGGTATGTACGGCAGTAACCCATGTGTGTGCCGGTATGTACGGCAGTAACCCATGTGTGTGTACGGCAGTAACCCATGTGTGTGCCTAATGTTTTTACAATGACGCTTCTGTGACATTACTTTACCTCATcgagatacactatatatatacgaaagtatgtggacaccacttcaaattagtggaattggctatttcagccacactcgttgcaGACGGGTGTAGAAagttgagcacacagccatgcaatctccatagacaaacattggcaataaaATGGCCTTACAGAGGAGCTTAGTgaatttcaacgtggcactgtcataggatgccacctttccaacaagtcagtttgtaaaatgtctgccctgctagagctgccctggtcaactgtaagtgctgttattgtgaagtggaaacgtctaggagcaacaacggctcagcggCAAAGTGGTAGGCAATACAAGTTCACAAAATGGGACCGGCAAGTGTTGAAGCGCGTAGTGTAAagatcatctgtcctcagttgcaacactccctaccgagttctaaactgcctttggaagcaacgtcagcacaataactgttttgtcgcgagcttcatgaaattggtttccatggccaagcagccataCACAAGCGTCGGCTGGtgtagtgtaaagctcgccgccattggactctggagcagtggaaacacgttctctggagtgatgaatcacacttcaccatctggaagtccgacagacaaatctgggtttggcggatgccaggagaacgctacctgccccaatgcatagtgtcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU631962 lncRNA downstream 877 88972875 ~ 88973694 (-) True G557592
TU631961 lncRNA downstream 3556 88970484 ~ 88971015 (-) True G557591
TU631901 lncRNA downstream 18026 88955361 ~ 88956545 (-) False G557543
TU631902 lncRNA downstream 18075 88955361 ~ 88956496 (-) False G557543
TU631903 lncRNA downstream 18107 88955361 ~ 88956464 (-) True G557543
TU632015 lncRNA upstream 7721 89119315 ~ 89119689 (-) True G557638
TU632030 lncRNA upstream 22860 89134454 ~ 89134679 (-) True G557647
TU632048 lncRNA upstream 38138 89149732 ~ 89157100 (-) True G557662
TU632050 lncRNA upstream 50710 89162304 ~ 89162575 (-) True G557664
TU632085 lncRNA upstream 100605 89212199 ~ 89212515 (-) True G557691
XM_036981428.1 mRNA downstream 10062 88957062 ~ 88964509 (-) False LOC110506978
XM_036981427.1 mRNA downstream 10063 88957063 ~ 88964508 (-) True LOC110506978
XM_036981429.1 mRNA downstream 10064 88956590 ~ 88964507 (-) False LOC110506978
XM_036981430.1 mRNA downstream 10064 88956590 ~ 88964507 (-) False LOC110506978
XM_036981431.1 mRNA downstream 10064 88956590 ~ 88964507 (-) False LOC110506978
XM_036981436.1 mRNA upstream 115947 89227541 ~ 89267484 (-) False LOC110526791
XM_036981435.1 mRNA upstream 115947 89227541 ~ 89267492 (-) True LOC110526791
XM_021591141.2 mRNA upstream 205531 89317125 ~ 89346431 (-) True LOC110509922
trnag-ucc mRNA upstream 283309 89394903 ~ 89394974 (-) True trnag-ucc
XM_036981437.1 mRNA upstream 444785 89556379 ~ 89561287 (-) False LOC118964962
TU630905 other downstream 1189219 87773247 ~ 87785352 (-) True LOC110526751
TU630611 other downstream 1423181 87546589 ~ 87551390 (-) True LOC110513865
TU630566 other downstream 1476479 87483766 ~ 87498092 (-) True LOC110506946
TU630563 other downstream 1510716 87457977 ~ 87463855 (-) False LOC110506946
TU629608 other downstream 2516606 86455124 ~ 86457965 (-) True G555617
TU632049 other upstream 47630 89159224 ~ 89159885 (-) True G557663
TU632545 other upstream 509754 89621348 ~ 89621755 (-) True G558051
TU632626 other upstream 608881 89720475 ~ 89721154 (-) False G558124
TU632786 other upstream 754374 89865968 ~ 89866927 (-) False G558246
TU632790 other upstream 754374 89865968 ~ 89868057 (-) False G558246

Expression Profile