RNA id: XM_036981443.1


Basic Information

Item Value
RNA id XM_036981443.1
length 2200
RNA type mRNA
GC content 0.52
exon number 5
gene id LOC110526793
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 89956035 ~ 89965389 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCAGTATAAAAAAAGTTGAGCTACACCCTTCAAACCAGTTCAGTCATCCCACAGACACTCCTAGGAAAACAAGCCAGCCTTCTTGGGAACTGAACCACAGAGCACAGCAGTACAcattctctcatctctccctcgatGCCTATCTCTGATCTCAGGATGTGGACTCTACTGCTTGGGGTTATTTTCGGACTTCTGGCACCTGTTCAGTCCGACCCTGTTCCTGCCCCGACAGAACCTCCCGCTCTGGCTGCTGGGGATTTTCTTGGAGAAACTTTCAAGATCTTCAAGAAGCTTGTAGTGGGTCCCCCGGATGCCACCAATGGAACATCCAGCAGTGACGAAACAGTGGACCTTGATCATTTGGTGACCCCTGACCCTGTGACATCTGACCCGGAAGACCAGCTGCCCACCTTTGACCCAGAGGAGGGCAGCACAGATGAGACAGAGGGCAGCACTACAGAGGGAAGTATGAAACACCCCACTTCAGGACAAGACGATGAAGGGGAGCTGTTTGACGCCAACCTTAAACCTAGCTTTAACCTCCACCCCAGTCCAAGTCCTCGCCCCAGTCCAACTCCTCGCCCCAGTCAAAGCAACACAGAGGACAATTATGAAAAGTACGACTATGATTCCAGTCCAAGTGATAGACCTGATTCACCAGAGGAAGATGAAATTATCCTGGATACTGAAAGCCCCACAGCAGAGTTTGTCCCCACAGTAGAGTTTGTCCCCACAGTAGAGTTTGTCCCCACAGCAGAGTTTGTCCCCACAGTAGAGTTTGTCCCCACAGCAGAGGTTGTCCCCACAGTAGAGTTTGTCCCCACAGCAGAGTTTATCCCCACAGTAGAGTTTGTCCCCACAGCAGAGTTTGTCCCCACAGCAGAGTTTGTCCCCACAGCAGAGTTTGTCCCCACAGTAGAGTTTGTCCCCACAGTAGAGTTTGTCCCCACAGCAGAGTTTGTCCCCACAGCAGAGTTTGTCCCCACAGCAGAGTTTGTCCCCACAGCAGAGGTTGTCCCCACAGTAGAGTTTGTCCCCACAGCTGATTTTCAGATGGATTTGGAAGATGTTAACGCAATCCTTGACGCTAACCCCAGCCCCAGTCCTTATCCAACTCATGACGCTAACCCCAGCACCAGTCCTTATCCAACTCATGATGCTAGCACCACAACAGAGCTAGAGGAGTTGGAGGACGATAAATTCAGACCAAACTTTGTCGCCAGCCCTAGTCGTGTACCGGATCCCAGTCCCAGCCATAGTCCCATCTCAGAGTTTGAAGAAGAAGACCTGTTACCTCTTAGCCTTGATCCAAGCTTTAGTACCACCTCCAGACCTAGCCAAAGTTCGGGCACCAGCCATACACCTAGTTCTAACCTAACCAGTATGACAGGCTTGGAGGAAGGCGGGGCTGCAGAGATGAATACAGAGCTGGCCTTCACCCCAACCACCAGTTCTGCTGCACCTACAACAGTCAGGATGAATTCAGACATCGAAGGGTCAGGGTCGGGATTCCTGCCTCAGAGTAGCACCACAGTAGCAGCCCCTGCTGGAGAGGAGGACCAAACATACAACTCCCTAGTTGATAAGCCATTCATTGAAACAAAGACAAGAATTCAAGGCAGCAATAGGCTTGCTCTACCAAGGGAGGAACCGGCAGTGGATTCCtctacagTTCTTCATGATGCAGCTGCTGTAAAACCAACCCCATCCAGACAACATGATTCATATACATCGGgttgGTTGATCATCGTTGCCTTCGTCGCGGGCGTGGCAGTCTTGGTCGTAATCTGTGTCGCCATAGGTACCAGAGACAGGTGGAATGCACCGGCCCAGGCATCTGAGAAGAAGGTCGCCAACGCGAGCTCAGGAGATGAGAAGGCGGAGCGGGAAATGGAGAGGTTTCTGTCTAAAGAGAGGCCGAGGGAAAACACCCACGCTGGAGAGTACACTGTTATACTTCTGGAGGACCTCCCAGAGAAAGAGCCGCTGGACTGAGACGGGCCAAGGAGATGCAGAACGGGGACAAAATAAGAACAACGAACACCTGAGAAATAGAATGGAACGGGTCTCCCCATTCTAGTCAATGGTGGCATAATGGGTGGCATAATGggtggcataatgggtggactcccccccattcttgacacacacaggaaactgttgagtgtgaaaaacccagcagcgttgtagttcttgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU632905 lncRNA downstream 2827 89953593 ~ 89955088 (-) True G558320
TU632940 lncRNA downstream 7465 89948864 ~ 89950450 (-) True G558348
TU632910 lncRNA downstream 61000 89896609 ~ 89896915 (-) True G558323
TU632778 lncRNA downstream 94490 89863180 ~ 89863425 (-) True G558245
TU632763 lncRNA downstream 101209 89856417 ~ 89856706 (-) True G558235
TU632930 lncRNA upstream 9989 89975378 ~ 89975882 (-) False G558339
TU632949 lncRNA upstream 17079 89982468 ~ 89982700 (-) True G558355
TU632950 lncRNA upstream 17565 89982954 ~ 89983208 (-) True G558356
TU632954 lncRNA upstream 27539 89992928 ~ 89993610 (-) True G558360
TU632960 lncRNA upstream 37670 90003059 ~ 90003368 (-) True G558364
XM_036981438.1 mRNA downstream 396626 89556379 ~ 89561289 (-) True LOC118964962
XM_036981437.1 mRNA downstream 396628 89556379 ~ 89561287 (-) False LOC118964962
trnag-ucc mRNA downstream 562941 89394903 ~ 89394974 (-) True trnag-ucc
XM_021591141.2 mRNA downstream 611484 89317125 ~ 89346431 (-) True LOC110509922
XM_036981435.1 mRNA downstream 690423 89227541 ~ 89267492 (-) True LOC110526791
XM_036981448.1 mRNA upstream 291855 90257244 ~ 90267943 (-) True LOC110506981
XM_036981796.1 mRNA upstream 335997 90301386 ~ 90303985 (-) True LOC118965054
XM_036981449.1 mRNA upstream 337729 90303118 ~ 90324307 (-) False LOC110506215
XM_036981450.1 mRNA upstream 337729 90303118 ~ 90324307 (-) False LOC110506215
XM_036981451.1 mRNA upstream 337729 90303118 ~ 90324307 (-) True LOC110506215
TU632790 other downstream 89858 89865968 ~ 89868057 (-) False G558246
TU632795 other downstream 90000 89865968 ~ 89867915 (-) False G558246
TU632786 other downstream 90988 89865968 ~ 89866927 (-) False G558246
TU632797 other downstream 90988 89865968 ~ 89866927 (-) True G558246
TU632626 other downstream 236761 89720475 ~ 89721154 (-) False G558124
TU632927 other upstream 8793 89974182 ~ 89981624 (-) False G558339
TU632929 other upstream 10495 89975884 ~ 89981624 (-) True G558339
TU633981 other upstream 957709 90923098 ~ 90923835 (-) False G559123
TU634055 other upstream 1025441 90990830 ~ 90992177 (-) True G559162
TU634056 other upstream 1027047 90992436 ~ 90992949 (-) True G559163

Expression Profile